mRNA_H-paniculata_contig11619.1044.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig11619.1044.1
Unique Name	mRNA_H-paniculata_contig11619.1044.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

[Close]

BLAST of mRNA_H-paniculata_contig11619.1044.1 vs. uniprot
Match: A0A6H5KB86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB86_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 5.560e-20
Identity = 54/121 (44.63%), Postives = 73/121 (60.33%), Query Frame = -3

Query:  323 RRAKARTTLQEATCP--SESCFTLPPLLVESFGCLGKNGEELLEQVKSSVVGEQESDEVLQKGILLERMKQVISVITQVAISRRVQRHRLALRGRQEA-------VKASLNPRAWGWSLAA 658
            RR    TTL   TCP  + + F L  L VESFG LG+ G E ++++ +  VG ++   +  KG+  ER+ Q++SV TQVAISRRVQR++LALRGRQ+A             P  WGWS+ A
Sbjct:    9 RRESVSTTLVRDTCPLTNAASFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 129

[Close]

BLAST of mRNA_H-paniculata_contig11619.1044.1 vs. uniprot
Match: A0A6H5K2J3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J3_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 6.290e-17
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = -3

Query:  323 ESCFTLPPLLVESFGCLGKNGEELLEQVKSSVVGEQESDEVLQKGILLERMKQVISVITQVAISRRVQRHRLALRGRQEA-------VKASLNPRAWGWSLAA 610
            E  F L  L VESFG LG+ G E ++++ +  VG ++   +  KG+  ER+ Q++SV TQVAISRRVQR++LALRGRQ+A             P  WGWS+ A
Sbjct:   24 ERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 126

[Close]

BLAST of mRNA_H-paniculata_contig11619.1044.1 vs. uniprot
Match: A0A6H5JL29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL29_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.220e-16
Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = -3

Query:  323 ESCFTLPPLLVESFGCLGKNGEELLEQVKSSVVGEQESDEVLQKGILLERMKQVISVITQVAISRRVQRHRLALRGRQEA----VKASLN---PRAWGWSLAA 610
            E  F L  L VESFG LG+ G E ++++ +  VG ++   +  KG+  ER+ Q++SV TQVAISRRVQR++LALRGRQ+A     +++ N   P  WGWS+ A
Sbjct:   64 EHSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSNQSTPMIWGWSVDA 166

[Close]

BLAST of mRNA_H-paniculata_contig11619.1044.1 vs. uniprot
Match: A0A6H5JZN4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN4_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.180e-16
Identity = 46/103 (44.66%), Postives = 64/103 (62.14%), Query Frame = -3

Query:  323 ESCFTLPPLLVESFGCLGKNGEELLEQVKSSVVGEQESDEVLQKGILLERMKQVISVITQVAISRRVQRHRLALRGRQEA-------VKASLNPRAWGWSLAA 610
            E  + L  L VESFG LG+ G E ++++ +  VG ++   +  KG+  ER+ Q++SV TQVAISRRVQR++LALRGRQ+A             P  WGWS+ A
Sbjct:   62 EGSYKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 164

[Close]

BLAST of mRNA_H-paniculata_contig11619.1044.1 vs. uniprot
Match: A0A6H5KAD2_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD2_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 7.480e-16
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = -3

Query:  323 ESCFTLPPLLVESFGCLGKNGEELLEQVKSSVVGEQESDEVLQKGILLERMKQVISVITQVAISRRVQRHRLALRGRQEA-------VKASLNPRAWGWSLAA 610
            E  F L  L VESFG LG+ G E ++++ +  VG ++   +  KG+  ER+ Q++SV TQVAISRRVQR++LALRGRQ+A             P  WGWS+ A
Sbjct:  101 ERRFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 203

[Close]

BLAST of mRNA_H-paniculata_contig11619.1044.1 vs. uniprot
Match: A0A6H5JKF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF1_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.540e-15
Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = -3

Query:  323 ESCFTLPPLLVESFGCLGKNGEELLEQVKSSVVGEQESDEVLQKGILLERMKQVISVITQVAISRRVQRHRLALRGRQEA----VKASLN---PRAWGWSLAA 610
            E  F L  L VESFG LG+ G E ++++ +  VG ++   +  KG+  ER+ Q++SV TQVAISRRVQR++LALRGRQ+A     +++ N   P  WGWS+ A
Sbjct:  182 ERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLFQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSNQSTPMIWGWSVDA 284

[Close]

BLAST of mRNA_H-paniculata_contig11619.1044.1 vs. uniprot
Match: A0A6H5JEF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF1_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.640e-15
Identity = 48/105 (45.71%), Postives = 64/105 (60.95%), Query Frame = -3

Query:  332 CP-SESCFTLPPLL-VESFGCLGKNGEELLEQVKSSVVGEQESDEVLQKGILLERMKQVISVITQVAISRRVQRHRLALRGRQEAVKASLN-------PRAWGWS 619
            CP + +   LPP L VESFG LG  G E + ++ +  VG ++   +  KG+  ER+ Q++SV TQVAISRRVQR++LA RGRQ+A K           P  WGWS
Sbjct:   28 CPLTNAASNLPPYLAVESFGRLGDEGYEFINELATHAVGARDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLASRGRQDAEKRRTRSTSNKSTPMIWGWS 132

[Close]

BLAST of mRNA_H-paniculata_contig11619.1044.1 vs. uniprot
Match: A0A6H5JPW7_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPW7_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.250e-15
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = -3

Query:  323 ESCFTLPPLLVESFGCLGKNGEELLEQVKSSVVGEQESDEVLQKGILLERMKQVISVITQVAISRRVQRHRLALRGRQEA-------VKASLNPRAWGWSLAA 610
            E  F L  L VESFG LG+ G E ++++ +  VG ++   +  KG+  ER+ Q++SV TQVAISRRVQR++LALRGRQ+A             P  WGWS+ A
Sbjct:  213 ERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 315

[Close]

BLAST of mRNA_H-paniculata_contig11619.1044.1 vs. uniprot
Match: A0A6H5JUN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN7_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.560e-15
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = -3

Query:  323 ESCFTLPPLLVESFGCLGKNGEELLEQVKSSVVGEQESDEVLQKGILLERMKQVISVITQVAISRRVQRHRLALRGRQEAVKASLN-------PRAWGWSLAA 610
            E  F L  L VESFG LG+ G E ++++ +  VG ++   +  KG+  ER+ Q++SV TQVAISRRVQR++LALRGRQ+A             P  WGWS+ A
Sbjct:  222 ERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENTRTRSTSDQPTPTLWGWSVDA 324

[Close]

BLAST of mRNA_H-paniculata_contig11619.1044.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 4.290e-15
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = -3

Query:  323 ESCFTLPPLLVESFGCLGKNGEELLEQVKSSVVGEQESDEVLQKGILLERMKQVISVITQVAISRRVQRHRLALRGRQEA-------VKASLNPRAWGWSLAA 610
            E  F L  L VESFG LG+ G E ++++ +  VG ++   +  KG+  ER+ Q++SV TQVAISRRVQR++LALRGRQ+A             P  WGWS+ A
Sbjct:  290 ERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 392

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig11619.1044.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig11619.1044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KB86_9PHAE	5.560e-20	44.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K2J3_9PHAE	6.290e-17	45.63	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JL29_9PHAE	1.220e-16	46.60	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZN4_9PHAE	3.180e-16	44.66	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KAD2_9PHAE	7.480e-16	45.63	Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JKF1_9PHAE	1.540e-15	46.60	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JEF1_9PHAE	1.640e-15	45.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JPW7_9PHAE	2.250e-15	45.63	Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUN7_9PHAE	3.560e-15	45.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KDZ4_9PHAE	4.290e-15	45.63	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig11619	contig	H-paniculata_contig11619:1846..2580 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	735
Cds size	411
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig11619.1044.1	prot_H-paniculata_contig11619.1044.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig11619 2154..2564 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928872.164386-UTR-H-paniculata_contig11619:1845..2153	1622928872.164386-UTR-H-paniculata_contig11619:1845..2153	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig11619 1846..2153 +
1691480651.8274388-UTR-H-paniculata_contig11619:1845..2153	1691480651.8274388-UTR-H-paniculata_contig11619:1845..2153	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig11619 1846..2153 +
1622928872.193687-UTR-H-paniculata_contig11619:2564..2580	1622928872.193687-UTR-H-paniculata_contig11619:2564..2580	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig11619 2565..2580 +
1691480651.843532-UTR-H-paniculata_contig11619:2564..2580	1691480651.843532-UTR-H-paniculata_contig11619:2564..2580	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig11619 2565..2580 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928872.175859-CDS-H-paniculata_contig11619:2153..2564	1622928872.175859-CDS-H-paniculata_contig11619:2153..2564	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig11619 2154..2564 +
1691480651.8356965-CDS-H-paniculata_contig11619:2153..2564	1691480651.8356965-CDS-H-paniculata_contig11619:2153..2564	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig11619 2154..2564 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig11619:1846..2580+
coding sequence from alignment at H-paniculata_contig11619:1846..2580+

protein sequence of mRNA_H-paniculata_contig11619.1044.1

>prot_H-paniculata_contig11619.1044.1 ID=prot_H-paniculata_contig11619.1044.1|Name=mRNA_H-paniculata_contig11619.1044.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MEHYGAAKLHPQARGLRDAFTASCLPRRASLCLCTRLEMATCVITEMTCF
IRSSSIPFCKTSSLSCSPTTLDFTCSSSSSPFFPRHPKLSTRRGGSVKQL
SEGHVASWSVVRAFARLRSGGGQAVDGSAPALKVPC*

mRNA from alignment at H-paniculata_contig11619:1846..2580+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig11619.1044.1 ID=mRNA_H-paniculata_contig11619.1044.1|Name=mRNA_H-paniculata_contig11619.1044.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=735bp|location=Sequence derived from alignment at H-paniculata_contig11619:1846..2580+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCATCATTATCGCCTTCTGACAATTGCAGACTCAGAACTGGCTGTGGGA
ATCTTCGAAAGTAAGCTCACAAAGTAAGAAAAATGAATGGCAGACAAAAC
AAGAAAAATCAAAAATAAGAATAACCACGTGTTGTACTCGAATACCCTAT
CTACAGCAAAACCTCTTGGGCAAAAACCTTTTGTCCCTCAATTGAGCACT
ATAGATATGTAACTTACTTTTACCAGGTCAAAACATGCCATACAGTGAAA
TCCCTCCGCTATCTAACATAATAACATATGTAAAATCGAAAAGTGATAAA
ATGTCGTAATGGAACACTACGGCGCCGCTAAACTCCATCCCCAAGCTCGA
GGATTGAGGGACGCTTTTACTGCTTCTTGCCTTCCCCGCAGAGCCAGTCT
ATGTCTCTGCACCCGTCTCGAGATGGCTACCTGTGTAATCACCGAAATGA
CTTGTTTCATCCGCTCCAGCAGTATTCCTTTTTGCAAAACCTCGTCGCTC
TCTTGTTCCCCCACCACGCTGGACTTCACCTGCTCAAGCAGCTCCTCTCC
GTTCTTTCCCAGACACCCAAAGCTTTCCACCAGGAGGGGGGGAAGTGTGA
AACAACTCTCCGAAGGACACGTGGCCTCTTGGAGCGTAGTGCGCGCTTTT
GCGCGCCTCAGAAGTGGCGGCGGCCAAGCCGTCGATGGTAGCGCTCCCGC
GCTCAAGGTGCCCTGCTGACTGGGGATCTGGGTGC

Coding sequence (CDS) from alignment at H-paniculata_contig11619:1846..2580+

>mRNA_H-paniculata_contig11619.1044.1 ID=mRNA_H-paniculata_contig11619.1044.1|Name=mRNA_H-paniculata_contig11619.1044.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig11619:1846..2580+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAACACTACGGCGCCGCTAAACTCCATCCCCAAGCTCGAGGATTGAG
GGACGCTTTTACTGCTTCTTGCCTTCCCCGCAGAGCCAGTCTATGTCTCT
GCACCCGTCTCGAGATGGCTACCTGTGTAATCACCGAAATGACTTGTTTC
ATCCGCTCCAGCAGTATTCCTTTTTGCAAAACCTCGTCGCTCTCTTGTTC
CCCCACCACGCTGGACTTCACCTGCTCAAGCAGCTCCTCTCCGTTCTTTC
CCAGACACCCAAAGCTTTCCACCAGGAGGGGGGGAAGTGTGAAACAACTC
TCCGAAGGACACGTGGCCTCTTGGAGCGTAGTGCGCGCTTTTGCGCGCCT
CAGAAGTGGCGGCGGCCAAGCCGTCGATGGTAGCGCTCCCGCGCTCAAGG
TGCCCTGCTGAATGGAACACTACGGCGCCGCTAAACTCCATCCCCAAGCT
CGAGGATTGAGGGACGCTTTTACTGCTTCTTGCCTTCCCCGCAGAGCCAG
TCTATGTCTCTGCACCCGTCTCGAGATGGCTACCTGTGTAATCACCGAAA
TGACTTGTTTCATCCGCTCCAGCAGTATTCCTTTTTGCAAAACCTCGTCG
CTCTCTTGTTCCCCCACCACGCTGGACTTCACCTGCTCAAGCAGCTCCTC
TCCGTTCTTTCCCAGACACCCAAAGCTTTCCACCAGGAGGGGGGGAAGTG
TGAAACAACTCTCCGAAGGACACGTGGCCTCTTGGAGCGTAGTGCGCGCT
TTTGCGCGCCTCAGAAGTGGCGGCGGCCAAGCCGTCGATGGTAGCGCTCC
CGCGCTCAAGGTGCCCTGCTGA