mRNA_H-paniculata_contig403.10437.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig403.10437.1
Unique NamemRNA_H-paniculata_contig403.10437.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig403.10437.1 vs. uniprot
Match: D8LEI6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEI6_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 8.040e-30
Identity = 107/230 (46.52%), Postives = 132/230 (57.39%), Query Frame = 1 
Query:  421 MEKEEVERQELLKAMSRTQRRKNRAASIAAPSRSPDEALAGGISSPISKRGGHHGTNTIASLVEDGVLFRPGPSEVKLRTARQMQLEVARRRGRGAIVEHGNSGWIGEEGFNV--GRERGAQVS---TGSRSLTVRRLSSSCQVGTSGDSTVGGGGGVGVVLEVNRTGGGGRKGSGGAGRART---GEGRPNMIFTPSLVPVGMDSVRSSPITLGNCVGEGRGRTSGVRW 1086
            MEKEE ERQ LLK MSRT+RR  R AS  A S   + +     +SP   R         ASLVEDGVLFRPGP+ ++LRTA+QMQL VARRR +G   + G+   +    + +  G  +G   S   T    L V+R + S   GT+  +T G  GG+  VLEVNRTG                  GEGRPNMIFTPSL PVGM+SVRS P++LG+    G G+TS VRW
Sbjct:    1 MEKEEEERQALLKTMSRTERRHGRIASFKASSGHGNNS-----NSPGRARQEQSAAAMTASLVEDGVLFRPGPTAIRLRTAKQMQLAVARRR-QGCNGDGGSGNEVDTPDYYLTGGEAQGLHPSSTPTAGGPLVVKRRAYSSD-GTA--ATAGRAGGL--VLEVNRTGXXXXXXXXXXXXRSVPGAGEGRPNMIFTPSLAPVGMESVRSCPMSLGS---GGLGQTSSVRW 216
[Close]
BLAST of mRNA_H-paniculata_contig403.10437.1 vs. uniprot
Match: A0A7S2FTG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FTG8_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.060e-12
Identity = 82/252 (32.54%), Postives = 121/252 (48.02%), Query Frame = 1 
Query:    1 MKAADYRIPWGRPSEHLLAVRREIVGRQKHVQRVHEARSHRTIDNDRPECAQMPHLLVRPKKEQMQQDRQREIAAENYSLMHRLAGIMREERANPVPKYS-----HLSVEYRDSLRRKKLLKLETENRRLARSIKKQKPFYSTGEMEKEEVERQELLKAMSRT----QRRKNRAASIAAPSRSPDEALAGGISSPIS----------KRGGHHGTNTIASLVEDGVLFRPGPSEVKLRTARQMQLEVARRRG 699
            MKA DY +PWGRPSE ++A +RE    + + QR++  +S   ID   P  A   HL  R KK+Q+  DRQ  I  EN  L+ ++A I+R +     PK        L+    + +RRK+L K+  ENR +A  I++Q P Y   +M  +        K +SRT    QR +N    +     SPD     G++ P+S            GG    N  A L++   +     S  KL TA Q + ++A+ RG
Sbjct:    1 MKAVDYCVPWGRPSEDVIARKRERQSARLNKQRLNNIKS--MIDCSAP--AVPKHLANRQKKKQLAVDRQHVIDIENAKLVEKMARILRGQG----PKVCGDAPFRLTGSKNEPIRRKELEKISNENRAIAARIRQQAPNYDHFKMADDYHVSTGYAKNISRTFKRDQRIENNRRYLMEKGISPDGMEDDGMTGPMSGMXXXXXXXXXTGGSDAPNPYAMLIDANKM---STSMTKLTTASQARKQIAKDRG 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig403.10437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEI6_ECTSI8.040e-3046.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2FTG8_9STRA1.060e-1232.54Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig403contigH-paniculata_contig403:34134..38401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionKIAA1430 homologue
Ec32 orthologEc-21_004520.1
Exons4
Model size1086
Cds size1086
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig403.10437.1prot_H-paniculata_contig403.10437.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig403 34134..38401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930234.3855088-CDS-H-paniculata_contig403:34133..343251622930234.3855088-CDS-H-paniculata_contig403:34133..34325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig403 34134..34325 +
1691481202.9544916-CDS-H-paniculata_contig403:34133..343251691481202.9544916-CDS-H-paniculata_contig403:34133..34325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig403 34134..34325 +
1622930234.4012706-CDS-H-paniculata_contig403:34869..350341622930234.4012706-CDS-H-paniculata_contig403:34869..35034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig403 34870..35034 +
1691481202.9776804-CDS-H-paniculata_contig403:34869..350341691481202.9776804-CDS-H-paniculata_contig403:34869..35034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig403 34870..35034 +
1622930234.420696-CDS-H-paniculata_contig403:36795..370121622930234.420696-CDS-H-paniculata_contig403:36795..37012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig403 36796..37012 +
1691481202.9898143-CDS-H-paniculata_contig403:36795..370121691481202.9898143-CDS-H-paniculata_contig403:36795..37012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig403 36796..37012 +
1622930234.438628-CDS-H-paniculata_contig403:37889..384011622930234.438628-CDS-H-paniculata_contig403:37889..38401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig403 37890..38401 +
1691481203.0019312-CDS-H-paniculata_contig403:37889..384011691481203.0019312-CDS-H-paniculata_contig403:37889..38401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig403 37890..38401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig403.10437.1

>prot_H-paniculata_contig403.10437.1 ID=prot_H-paniculata_contig403.10437.1|Name=mRNA_H-paniculata_contig403.10437.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=362bp
MKAADYRIPWGRPSEHLLAVRREIVGRQKHVQRVHEARSHRTIDNDRPEC
AQMPHLLVRPKKEQMQQDRQREIAAENYSLMHRLAGIMREERANPVPKYS
HLSVEYRDSLRRKKLLKLETENRRLARSIKKQKPFYSTGEMEKEEVERQE
LLKAMSRTQRRKNRAASIAAPSRSPDEALAGGISSPISKRGGHHGTNTIA
SLVEDGVLFRPGPSEVKLRTARQMQLEVARRRGRGAIVEHGNSGWIGEEG
FNVGRERGAQVSTGSRSLTVRRLSSSCQVGTSGDSTVGGGGGVGVVLEVN
RTGGGGRKGSGGAGRARTGEGRPNMIFTPSLVPVGMDSVRSSPITLGNCV
GEGRGRTSGVRW
back to top

mRNA from alignment at H-paniculata_contig403:34134..38401+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig403.10437.1 ID=mRNA_H-paniculata_contig403.10437.1|Name=mRNA_H-paniculata_contig403.10437.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4268bp|location=Sequence derived from alignment at H-paniculata_contig403:34134..38401+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGCTGCCGACTACCGCATACCATGGGGGCGGCCGAGCGAGCACCT
GCTCGCTGTAAGGCGAGAGATTGTGGGGCGGCAAAAGCACGTGCAGAGGG
TTCATGAAGCTCGAAGCCATAGAACCATAGACAACGATCGGCCGGAGTGC
GCACAGATGCCGCATCTCCTTGTCCGCCCGAAGAAGGAACAAGTAAGCAC
GCACTAGACCTGGGATAGGTGATGGTAAGCGAGGTGATTGAGGGATGAGT
GTGTTGGAAGGGTGTGCTTTCTCCGAAAAAACAAAATTTAGTACATGAGA
AAGCTTCCAAATCTTCGATACTGTATCGTCTCTAACAATCCCAGTTATAT
TTCGGCCCAGACTCCAGACTGGTATATCGTACATTGTTTGGTGTCGAGCA
CTAGATACCCCCTCACTGTCTTGAACAAACAAAACGGGATGAAACTGGCA
CGACAAACTCCTTTCCACTGCTTGGGATGATCTATATAATGTCGCTGGTC
GACTCTCGAGCCAACCCACGAAAAGCTTCGTAGAGGTGTCCAGGACAACG
CAATGATTGAATTGGTGTCAACGAGATCTTCAGTACAATTTCAACTCCGG
GAGCTCTACTTGTCAGACCCGAACTGAATAATAAACTAACTGAATAGCGG
TGATAAGAAGGACCACTCGGCGTAACTGAACCAGAACGTATCTACAATAT
CCGCGCTCGATGAAACAAACGCCGCCAAAAGCACAGATGCAGCAGGACCG
GCAGAGAGAAATCGCCGCGGAGAACTACTCACTGATGCATCGCCTGGCGG
GAATAATGCGGGAGGAGAGAGCGAATCCGGTTCCGAAGTACTCACACTTG
TCGGTGGAGTATCGAGATAGTCTACGTCGAAAGAAGCTGCTAAAGCTTGA
GGTATGTACCCACAAGTGCGTGTAGAGCTACTGTATGCTTTAATAGCTTT
TTGGCAGCGAGGAGAAAATTGGGACACCCGTCTGTCATGTAATCGCTGCA
GGGCTAGCACTGGGCTTCGCCATCTCTCATGATTAATGTCAGAATCAAAA
GGTTTGTGTTGCATTTCGATCTAAGATATGATATAAGGGCAGCAGCCGCA
TCAACGGTGGCGACAATCCGCAAAAACGTACAAGACCCATATTTTAGCTC
CAAAGCCTACCGTACAGGGACACCCGAATCTAGCTTTGATTTATTCACCC
TGGGGGGGGTTCTGGTCATAGCTCTCGCTGGTGCCGCTGCCGTTAGCTAT
CGTAGTTTCCACGATGCAAAGCCGGGTTTTTATCGAGGTAGCCAAGAAAG
AAGCTCTTGTACCTACCACAGTGCCCCCTGGAGTCCCTTCGGATGCGTCA
CCGGAGCGCTCCCTCTGTTCTTCCTTCTCACCACAAACGAAATATATCAC
AAATGCCGGAGATGATGAAAATATGGTATTGGGTAGCGTAAAACAACGCG
GCTGCTGCGCTGTACCAAATTTTGTGCTTGCTGCCGAAGCGGTTTGAGGG
TCACCTCAGATAGAGGAGAATTTGACCGCTGATTTTACGATTTAGCCACG
AAGGGGCCAAATTGCTTCCCTCCGCGGGCCTTCCCGGGCGGGGGCTCCGG
CAGGCATGGAGAGGCCGCACCGAACCGGCCGGGGGTCATTTCTTGACGCT
GATATCGGTTAGTATTCCCCGCCGCCAATGTGGGCAATCGTGGTAGGTCA
AAATTTGGCTGGTCCGTGATTGATGATATATCTTACTCATAGAGTGCCGT
TCATGTATGGGCAAGTCTTCATGTTTTGCTGATGATGACGTGTTTAATAC
AGTTGTGCGAACAGCTAGGGCACAGGCCTCCTACCCAAACATCAGCCCTC
GAGTTTCTTTTAAAGGTGCAACCGGTGACAATGCTCGAACACTGTGATAC
ACGGCAAGATGTCGATGAGAACGCGTCCACAGAAGGAGGACGCCATAAGA
GTGAAAGTCTGTCTGCGTCGAGTGGACAGTCTCACTTGGGGACATCCGTT
CACTCTCCTCTGTACATTTGTTCTCGGGCAGACGGCTTCATCGATCTCTG
GGTGTACGCCTTGTGCATTCGAAATTTTCGCTGATTGGCATATTTACCAA
TGTTTTTCATGATTCGAATTCGGATACACCTGTCCCAACCGCGACCCCTG
GCGCGTATGAGGCATGTCACCACCAGTAAAAGTGAGCAATCCGAAACAAC
AAACAAGATTTCAACATTTAGATTTACCAGATATTGCAACAAGACATGAC
ATGAGGCTGAGTCATAGTTGCATCTCGTCGGTGACTGATATGGTCGAAAA
TCGTAATATTAATACAGTAAAAGCCTACGCCAACGATGTTTCATGCTACC
CGAACTTTTATAGTCCTACCTTGTTCATGGGTTTTGATTGCCGTTTTGTT
CGAATCGATGGCGCTCCAACACACATCAAGGATAAGAAGTAAAATTCAAC
GAGAATTTTGAAAAGGCAAAGTCACAGGCGAATGGACTCAAAAGGATCTT
GTTCGTGAAACTCATAGCTGCTCCATCCACCCACAATATCCCGAAGCGCC
ACCCACTCGAAAAACGTCCTGCTTCTGGCAGTGGTGCTCCTTCCGTTTTC
TCCTTCTTGACAGATTGGTCCTCTTTCTTTTATATATGCCTCCCCTGAAA
ACTACGATATAGACGGAGAACCGAAGGCTAGCTCGTTCCATCAAGAAACA
GAAGCCGTTCTACTCCACGGGGGAAATGGAGAAAGAAGAAGTCGAGAGAC
AGGAGCTCCTGAAGGCTATGTCGCGAACGCAACGCCGTAAAAACAGAGCC
GCCAGCATCGCTGCACCCTCGCGCTCCCCAGACGAAGCCTTGGCGGGGGG
AATCTCATCACCGATATCGAAGCGCGGAGGTGGGGATGACTGCTCAAGCT
ATGGTGCAGGCGGGAGGGGGGGGGGGCATGCTGGTGAGGGGCGGGGGGGC
AGAGGAGGGCGGTTAGAAAACAGGGAAAAATGTTTTTACAAGAGAGTGAG
AGACATTTCGTGCCTACAGTTTTCTGATTGGTCGAAAAACAATGGTTGTC
AAGAGGGACCCGTCTTAGTAGTACATCGATGCTGACCATTCCGGTGAAAG
ATCCTTGCGTGAATGTATAGTACGTCGCGATGACCACTTGTGAGCAAGGT
CCATTCTAGAGAGCGATACCACTAAATCCTTCGCCGCTTTGACCAATCGA
AAAGTGTTTGACCAATGAGAAAACTGCGGGCGCGAAATTCCTCTCTCTCT
AGTTATCGAGTTTTAAAACATCGATCGATGGAGATGTCTATTGTTGCTGC
CTCAGTATACACTTTTCCAGTGCAGCTGATGAGGCGGTCAACATTCCTTC
TAACCTAAACCTTCCCCCACGTTTATCTCACCCATCCTGCAGAGCATCAA
CACAGAATGCCTGGAGGTGAATGTACATGTGTATGTTGTCATGTCCCGAA
GCCGCTGTCGACTATGGCTACGATGAGTTGTTTAATCCCTGTGACCGCGA
TATATTTGGGATGGATAATCACTCCAGGAGCAATCGCTTACGTTAATCAC
TTGGGGCAAGGGGGGGGAGGCAAGGGGGGGGGGCAGGGGGGACGCATCCC
GTGGTTGATTTATTTTTACGTGCACCAGCCCTCTTACGGTCAAAGGGTAA
AAAATCTTCAAGTCTGTGCTAACTCCCTCTCTCCCCACCTTCATACCGCA
TACGCCCCCCTCCCCCCCGTCTAACAACCCTCTTGTCATGAAACATCACG
CACCAGGCCACCATGGCACGAATACTATCGCGAGTTTGGTGGAAGACGGT
GTGCTGTTCCGCCCGGGTCCTTCTGAGGTCAAACTGCGGACCGCGAGACA
GATGCAGCTGGAGGTGGCTCGACGGCGGGGGCGCGGGGCAATCGTAGAAC
ATGGCAACAGTGGTTGGATAGGAGAAGAGGGTTTCAACGTGGGGCGGGAG
AGGGGCGCACAGGTTTCAACGGGGTCCCGCTCTCTAACCGTGCGGAGATT
GTCGTCCTCGTGTCAAGTAGGGACGAGTGGGGATAGTACAGTCGGAGGCG
GTGGTGGAGTTGGTGTGGTTTTAGAAGTGAACCGTACTGGGGGAGGTGGC
AGGAAGGGGAGTGGAGGGGCTGGGCGCGCGCGGACGGGGGAAGGACGCCC
GAACATGATATTCACGCCGTCGTTGGTGCCAGTGGGGATGGATTCTGTGC
GCTCGAGTCCCATCACGTTGGGGAATTGTGTCGGGGAGGGGCGGGGAAGG
ACGAGCGGCGTGCGATGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig403:34134..38401+

>mRNA_H-paniculata_contig403.10437.1 ID=mRNA_H-paniculata_contig403.10437.1|Name=mRNA_H-paniculata_contig403.10437.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2172bp|location=Sequence derived from alignment at H-paniculata_contig403:34134..38401+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGCTGCCGACTACCGCATACCATGGGGGCGGCCGAGCGAGCACCT
GCTCGCTGTAAGGCGAGAGATTGTGGGGCGGCAAAAGCACGTGCAGAGGG
TTCATGAAGCTCGAAGCCATAGAACCATAGACAACGATCGGCCGGAGTGC
GCACAGATGCCGCATCTCCTTGTCCGCCCGAAGAAGGAACAAATGAAAGC
TGCCGACTACCGCATACCATGGGGGCGGCCGAGCGAGCACCTGCTCGCTG
TAAGGCGAGAGATTGTGGGGCGGCAAAAGCACGTGCAGAGGGTTCATGAA
GCTCGAAGCCATAGAACCATAGACAACGATCGGCCGGAGTGCGCACAGAT
GCCGCATCTCCTTGTCCGCCCGAAGAAGGAACAAATGCAGCAGGACCGGC
AGAGAGAAATCGCCGCGGAGAACTACTCACTGATGCATCGCCTGGCGGGA
ATAATGCGGGAGGAGAGAGCGAATCCGGTTCCGAAGTACTCACACTTGTC
GGTGGAGTATCGAGATAGTCTACGTCGAAAGAAGCTGCTAAAGCTTGAGA
TGCAGCAGGACCGGCAGAGAGAAATCGCCGCGGAGAACTACTCACTGATG
CATCGCCTGGCGGGAATAATGCGGGAGGAGAGAGCGAATCCGGTTCCGAA
GTACTCACACTTGTCGGTGGAGTATCGAGATAGTCTACGTCGAAAGAAGC
TGCTAAAGCTTGAGACGGAGAACCGAAGGCTAGCTCGTTCCATCAAGAAA
CAGAAGCCGTTCTACTCCACGGGGGAAATGGAGAAAGAAGAAGTCGAGAG
ACAGGAGCTCCTGAAGGCTATGTCGCGAACGCAACGCCGTAAAAACAGAG
CCGCCAGCATCGCTGCACCCTCGCGCTCCCCAGACGAAGCCTTGGCGGGG
GGAATCTCATCACCGATATCGAAGCGCGGAGACGGAGAACCGAAGGCTAG
CTCGTTCCATCAAGAAACAGAAGCCGTTCTACTCCACGGGGGAAATGGAG
AAAGAAGAAGTCGAGAGACAGGAGCTCCTGAAGGCTATGTCGCGAACGCA
ACGCCGTAAAAACAGAGCCGCCAGCATCGCTGCACCCTCGCGCTCCCCAG
ACGAAGCCTTGGCGGGGGGAATCTCATCACCGATATCGAAGCGCGGAGGC
CACCATGGCACGAATACTATCGCGAGTTTGGTGGAAGACGGTGTGCTGTT
CCGCCCGGGTCCTTCTGAGGTCAAACTGCGGACCGCGAGACAGATGCAGC
TGGAGGTGGCTCGACGGCGGGGGCGCGGGGCAATCGTAGAACATGGCAAC
AGTGGTTGGATAGGAGAAGAGGGTTTCAACGTGGGGCGGGAGAGGGGCGC
ACAGGTTTCAACGGGGTCCCGCTCTCTAACCGTGCGGAGATTGTCGTCCT
CGTGTCAAGTAGGGACGAGTGGGGATAGTACAGTCGGAGGCGGTGGTGGA
GTTGGTGTGGTTTTAGAAGTGAACCGTACTGGGGGAGGTGGCAGGAAGGG
GAGTGGAGGGGCTGGGCGCGCGCGGACGGGGGAAGGACGCCCGAACATGA
TATTCACGCCGTCGTTGGTGCCAGTGGGGATGGATTCTGTGCGCTCGAGT
CCCATCACGTTGGGGAATTGTGTCGGGGAGGGGCGGGGAAGGACGAGCGG
CGTGCGATGGGCCACCATGGCACGAATACTATCGCGAGTTTGGTGGAAGA
CGGTGTGCTGTTCCGCCCGGGTCCTTCTGAGGTCAAACTGCGGACCGCGA
GACAGATGCAGCTGGAGGTGGCTCGACGGCGGGGGCGCGGGGCAATCGTA
GAACATGGCAACAGTGGTTGGATAGGAGAAGAGGGTTTCAACGTGGGGCG
GGAGAGGGGCGCACAGGTTTCAACGGGGTCCCGCTCTCTAACCGTGCGGA
GATTGTCGTCCTCGTGTCAAGTAGGGACGAGTGGGGATAGTACAGTCGGA
GGCGGTGGTGGAGTTGGTGTGGTTTTAGAAGTGAACCGTACTGGGGGAGG
TGGCAGGAAGGGGAGTGGAGGGGCTGGGCGCGCGCGGACGGGGGAAGGAC
GCCCGAACATGATATTCACGCCGTCGTTGGTGCCAGTGGGGATGGATTCT
GTGCGCTCGAGTCCCATCACGTTGGGGAATTGTGTCGGGGAGGGGCGGGG
AAGGACGAGCGGCGTGCGATGG
back to top