mRNA_H-paniculata_contig40291.10434.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40291.10434.1
Unique NamemRNA_H-paniculata_contig40291.10434.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig40291.10434.1 vs. uniprot
Match: A0A2Z7AL20_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AL20_9LAMI)

HSP 1 Score: 221 bits (563), Expect = 7.040e-66
Identity = 116/296 (39.19%), Postives = 182/296 (61.49%), Query Frame = 1
Query:    1 FVRRPRKSLYGLKQSSRNWNNTLDDFLVGIGLNRSTTDSCLYVSRDEGGETNLLVAVYVDSLVIAG-RREKVDEFKHNISQHFKMKDLGSLSRVMGIEVRRDCPNGTITISQGSYIREVLKRYGFEECRGVATPVEEKVKISAPESTDKSSDSKPLGAVLSTEYRGMVGSLTYASVRTRSDIAYAVHQAVRRMGDPCREDFSTCKRIFRYLSTMSDLGITFGGRSNGHRLEGFVDADWAQDVEDRKTATGYVFELNGGAISWCSKKQQLVTWSNSEVEYVAAGEAGKETVYLRELL 885
             V R +KSLYGLKQ+ R W    D +++ +G NR + D C Y  R  GG   +++ +YVD +++AG  +++V E K  +++ F MKDLG  ++++G++V RD  N  I +SQ +Y+++ L R+  ++ + ++TP+    K+S+       ++   +  +    Y   VGSL +A + TR DIA AV    R M +P RE +ST KRI RY+   S+  + FGG  +   L G+VD+D+A D + RK+ TGYVF L GGA+SW SK Q +V  S +E EY+AA +A KET++++ LL
Sbjct:  123 LVCRLKKSLYGLKQAPRCWYKRFDSYIMSLGYNRLSADPCTYFKRS-GGNDYIILLLYVDDMLVAGPNKDRVQELKAQLAREFDMKDLGPANKILGMQVHRDRSNRKIWLSQTNYLQKFLHRFNMQDSKPISTPLPVNFKLSSDMCPSNEAERMEMSRI---PYASAVGSLMFAMICTRPDIAQAVGAVSRYMANPGREHWSTVKRILRYIKGTSNAALCFGG--SYLTLRGYVDSDYAGDPDKRKSTTGYVFTLAGGAVSWVSKLQTVVALSTTEAEYMAATQACKETIWIQRLL 412          
BLAST of mRNA_H-paniculata_contig40291.10434.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 217 bits (552), Expect = 1.040e-64
Identity = 115/291 (39.52%), Postives = 180/291 (61.86%), Query Frame = 1
Query:   19 KSLYGLKQSSRNWNNTLDDFLVGIGLNRSTTDSCLYVSRDEGGETNLLVAVYVDSLVIAGRR-EKVDEFKHNISQHFKMKDLGSLSRVMGIEVRRDCPNGTITISQGSYIREVLKRYGFEECRGVATPVEEKVK-ISAPESTDKSSDSKPLGAVLSTEYRGMVGSLTYASVRTRSDIAYAVHQAVRRMGDPCREDFSTCKRIFRYLSTMSDLGITFGGRSNGHRLEGFVDADWAQDVEDRKTATGYVFELNGGAISWCSKKQQLVTWSNSEVEYVAAGEAGKETVYLRELL 885
            KS YGLKQSSR WN+ LD+ L  IG  ++ +D C+YV  ++G     +VA++VD +++AG+  EK+ + K +I++ F++KD+G L  ++G++V ++  +G + I Q +Y   ++K+YG E C+ V TPV+   K +SA E ++  +           EY+  VGSL Y S  TR DI +AV+   +   +   E ++  KRIFRYL    + G+ +   +N   + GF DADWA D+ DRK+ +GY F++NG A+SW SKKQ  V  S +E EYVA   A +E +++R+LL
Sbjct:   18 KSRYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DGKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKE---------EYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLL 294          
BLAST of mRNA_H-paniculata_contig40291.10434.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 221 bits (563), Expect = 2.100e-63
Identity = 121/299 (40.47%), Postives = 180/299 (60.20%), Query Frame = 1
Query:    1 FVRRPRKSLYGLKQSSRNWNNTLDDFLVGIGLNRSTTDSCLYVSRDEGGETNLLVAVYVDSLVIAGRRE-KVDEFKHNISQHFKMKDLGSLSRVMGIEVRRDCPNGTITISQGSYIREVLKRYGFEECRGVATPVEEKVKISAPESTDKSSDSKPLGAVLSTEYRGMVGSLTYASVRTRSDIAYAVHQAVRRMGDPCREDFSTCKRIFRYLSTMSDLGITFGGRSNGHRLEGFVDADWAQDVEDRKTATGYVFELNGGAISWCSKKQQLVTWSNSEVEYVAAGEAGKETVYLRELLGPI 894
             V R R+S+YGLKQS R WN+ LD  L  +G  ++T D C+YV ++EGGE   ++AVYVD +++AG+ + K++E K  +++ F+MKD+G L   +G++V     +  I I Q +Y + VL+R+G E  +  +TPV    K+        + DS+ +  V    Y+  VG L Y S +TR DIAYAV    R   DP  E +   KRI RYL+   D+G+ + G        G+ DADWA D++DRK+ +GYVF+++  AISW SKKQ  V  S +E EY+A   A +E V+L++LL  +
Sbjct:  123 LVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKA-----ADDSQRVDQV---NYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDL 411          
BLAST of mRNA_H-paniculata_contig40291.10434.1 vs. uniprot
Match: W8BWJ0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BWJ0_CERCA)

HSP 1 Score: 226 bits (576), Expect = 2.170e-63
Identity = 124/294 (42.18%), Postives = 174/294 (59.18%), Query Frame = 1
Query:   16 RKSLYGLKQSSRNWNNTLDDFLVGIGLNRSTTDSCLYVSRDEGGETNLLVAVYVDSLVIAGRRE-KVDEFKHNISQHFKMKDLGSLSRVMGIEVRRDCPNGTITISQGSYIREVLKRYGFEECRGVATPVEEKVKISAPESTDKSSDSKPLGAVLSTEYRGMVGSLTYASVRTRSDIAYAVHQAVRRMGDPCREDFSTCKRIFRYLSTMSDLGITFGGRSNGHRLEGFVDADWAQDVEDRKTATGYVFELNGGAISWCSKKQQLVTWSNSEVEYVAAGEAGKETVYLRELLGPI 894
            +K++YGLKQS R WNNTLD+ L  +G  RS  ++CLYV + + G +   +AVYVD L+I    E ++   K  IS  F+M D GSLS  +G+E++RD   G +++ Q +YIR +LK YG + CR VATP++    +   + +           V  T+Y+ ++GSL Y ++ +R DI +AV +  +R  +P  E  +  K I RYLS   +L I +  R  G  + GF DADWA D  DRK+ +GY F L G A SW S KQ +V  S++E EYVA   A KE VYLR LL  I
Sbjct:  964 KKAIYGLKQSGRAWNNTLDEVLQNMGFKRSKNEACLYVKQQQQGSS--YIAVYVDDLIIISPSENEICAIKRQISSKFEMHDSGSLSYFLGLEIQRDGKQGYVSLCQKTYIRNLLKTYGMQNCRAVATPLDPGFLVCCKDDS--------CVKVNVTQYQSLIGSLMYLAILSRPDILHAVSKLSQRNTNPHTEHENAAKHILRYLSGTINLSIVY--RKTGEPVVGFADADWANDQLDRKSYSGYTFFLAGSAFSWSSAKQSIVALSSTEAEYVALTAAAKEAVYLRRLLAEI 1245          
BLAST of mRNA_H-paniculata_contig40291.10434.1 vs. uniprot
Match: A0A438CNG4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CNG4_VITVI)

HSP 1 Score: 220 bits (560), Expect = 8.150e-63
Identity = 121/291 (41.58%), Postives = 174/291 (59.79%), Query Frame = 1
Query:   16 RKSLYGLKQSSRNWNNTLDDFLVGIGLNRSTTDSCLYVSRDEGGETNLLVAVYVDSLVIAGRR-EKVDEFKHNISQHFKMKDLGSLSRVMGIEVRRDCPNGTITISQGSYIREVLKRYGFEECRGVATPVEEKVKISAPESTDKSSDSKPLGAVLSTEYRGMVGSLTYASVRTRSDIAYAVHQAVRRMGDPCREDFSTCKRIFRYLSTMSDLGITFGGRSNGHRLEGFVDADWAQDVEDRKTATGYVFELNGGAISWCSKKQQLVTWSNSEVEYVAAGEAGKETVYLRELL 885
            RKSLYGLKQ+ R W    D+F+  IG  R   D C YV   +   + +++ +YVD ++IAG   EK++  K  +S+ F MKDLG+  +++G+ + RD  NGT+ +SQ  Y+++VL R+   E + V+TP+    K+S  +S     +   +  V    Y   +GSL YA V TR DIA+AV    R M  P ++ +   K I RYL    D  + F G S   +L+G+VDAD+A D++ RK+ TG+VF L G AISW S  Q++VT S +EVEYVAA EAGKE ++L   L
Sbjct:  351 RKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYVKSFDN--SYIILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKV---PYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASL--KLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEVEYVAATEAGKEMIWLHGFL 634          
BLAST of mRNA_H-paniculata_contig40291.10434.1 vs. uniprot
Match: A5BYJ3_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BYJ3_VITVI)

HSP 1 Score: 213 bits (541), Expect = 8.880e-63
Identity = 118/291 (40.55%), Postives = 170/291 (58.42%), Query Frame = 1
Query:   16 RKSLYGLKQSSRNWNNTLDDFLVGIGLNRSTTDSCLYVSRDEGGETNLLVAVYVDSLVIAGRR-EKVDEFKHNISQHFKMKDLGSLSRVMGIEVRRDCPNGTITISQGSYIREVLKRYGFEECRGVATPVEEKVKISAPESTDKSSDSKPLGAVLSTEYRGMVGSLTYASVRTRSDIAYAVHQAVRRMGDPCREDFSTCKRIFRYLSTMSDLGITFGGRSNGHRLEGFVDADWAQDVEDRKTATGYVFELNGGAISWCSKKQQLVTWSNSEVEYVAAGEAGKETVYLRELL 885
            RKSLYGLKQ+ R W    D+F+  IG  R   D C YV   +   + +++ +YVD ++IAG   EK++  K  +S+ F MKDLG   +++G+ + RD  NGT+ +SQ  Y+++VL R+   E + V+TP+    K+S  +S     +   +  V    Y   +GSL YA V TR DIA+AV    R M    ++ +   K I RYL    D  + F G S   +L+G+VDAD+A D++ RK+ TG+VF L G AISW S  Q++VT S +E EYVAA EAGK  ++L   L
Sbjct:   48 RKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYVKSFDN--SYIILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGXAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDXMSKV---PYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRXGKQHWEAVKWILRYLKGSLDTCLCFTGASL--KLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWXSNLQKIVTLSTTEAEYVAATEAGKXMIWLHGFL 331          
BLAST of mRNA_H-paniculata_contig40291.10434.1 vs. uniprot
Match: H3GB98_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB98_PHYRM)

HSP 1 Score: 212 bits (540), Expect = 2.190e-62
Identity = 110/291 (37.80%), Postives = 173/291 (59.45%), Query Frame = 1
Query:   16 RKSLYGLKQSSRNWNNTLDDFLVGIGLNRSTTDSCLYVSRDEGGETNLLVAVYVDSLVIAGRREKVDEF-KHNISQHFKMKDLGSLSRVMGIEVRRDCPNGTITISQGSYIREVLKRYGFEECRGVATPVEEKVKISAPESTDKSSDSKPLGAVLSTEYRGMVGSLTYASVRTRSDIAYAVHQAVRRMGDPCREDFSTCKRIFRYLSTMSDLGITFGGRSNGHRLEGFVDADWAQDVEDRKTATGYVFELNGGAISWCSKKQQLVTWSNSEVEYVAAGEAGKETVYLRELL 885
            ++SLYGLKQS R WN T+DDF++ +G  +  +D C+Y+ RD  G+  + VA+YVD LV+A   +++ E  KH +S+ F+M DLG L   +G+E++    +G +T+ Q  +++ +L ++G ++ + V TP +  +K++             +  V    YR +VG+L Y  V TR D+A AV    +   DPC   +   KR+ RYL      G+ F  R +   + G+ DADWA D+E R++ +GY F +NGG ISW SKKQ+ V  S++E EY+A  EA +E V+L+  L
Sbjct:   37 KRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLELTKHALSKRFEMTDLGELEYFLGMEIKNTRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKNMCEGGCQHEDTMKNV---PYRSVVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFL 321          
BLAST of mRNA_H-paniculata_contig40291.10434.1 vs. uniprot
Match: A0A151R6U8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R6U8_CAJCA)

HSP 1 Score: 223 bits (568), Expect = 2.430e-62
Identity = 115/295 (38.98%), Postives = 179/295 (60.68%), Query Frame = 1
Query:    1 FVRRPRKSLYGLKQSSRNWNNTLDDFLVGIGLNRSTTDSCLYVSRDEGGETNLLVAVYVDSLVIAGRREKVDEFKHNISQHFKMKDLGSLSRVMGIEVRRDCPNGTITISQGSYIREVLKRYGFEECRGVATPVEEKVKISAPESTDKSSDSKPLGAVLSTEYRGMVGSLTYASVRTRSDIAYAVHQAVRRMGDPCREDFSTCKRIFRYLSTMSDLGITFGGRSNGHRLEGFVDADWAQDVEDRKTATGYVFELNGGAISWCSKKQQLVTWSNSEVEYVAAGEAGKETVYLRELL 885
             V R  KSLYGLKQ+ R W    D F++ +G NR ++D C Y +R +  +  +L+    D LV+   ++++ E K  +++ F MKDLG  ++++G+++ RD  N  I +SQ +Y+ +VL+R+  ++C+ ++TP+    K+S+  S    ++   +  V    Y   VGSL YA + TR DIA AV    R M DP RE +S  KRI RY+   SD+ + F G      + G+VD+D+A D++ RK+ TGYVF L GGA+SW SK Q +V  S +E EY+AA +A KE ++++ LL
Sbjct:  880 LVCRLTKSLYGLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLYVDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLKVLRRFNMQDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRV---PYASAVGSLMYAMICTRPDIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEGSE--FFVRGYVDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLL 1169          
BLAST of mRNA_H-paniculata_contig40291.10434.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA)

HSP 1 Score: 212 bits (540), Expect = 2.480e-62
Identity = 112/291 (38.49%), Postives = 170/291 (58.42%), Query Frame = 1
Query:   16 RKSLYGLKQSSRNWNNTLDDFLVGIGLNRSTTDSCLYVSRDEGGETNLLVAVYVDSLVIA-GRREKVDEFKHNISQHFKMKDLGSLSRVMGIEVRRDCPNGTITISQGSYIREVLKRYGFEECRGVATPVEEKVKISAPESTDKSSDSKPLGAVLSTEYRGMVGSLTYASVRTRSDIAYAVHQAVRRMGDPCREDFSTCKRIFRYLSTMSDLGITFGGRSNGHRLEGFVDADWAQDVEDRKTATGYVFELNGGAISWCSKKQQLVTWSNSEVEYVAAGEAGKETVYLRELL 885
            +++LYGLKQS R WN T+D+F+  IG  +  TD C+YV RD+  +  + V +YVD L++A    + +   K  +S+ F+M DLG L   +G+EV RD  +G +++ Q  ++  VL ++G ++C+ V TP +  +K++             +  V    YR  VG++ Y  V TR D+A AV    +   DPC   +   KR+ RYL      GI F G  +G  L G+ DADWA D+E R++ +GYVF LNGG I+W SKKQ+ V  S++E EY+A  EA +E V+L+  +
Sbjct:  140 KRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDD--KAMIFVVLYVDDLILACNDTDLLAATKRALSERFEMSDLGELKYCLGMEVERDDKSGDVSMRQTKFLHSVLAKFGMQDCKPVKTPQDPGLKLTKAMCEGGCKHDDTMQGV---PYRSAVGAVMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVLRYLQATPTHGIRFAGSGDGE-LIGYSDADWAGDIETRRSTSGYVFVLNGGCITWRSKKQRTVALSSTEAEYMALSEATQEAVWLKAFM 424          
BLAST of mRNA_H-paniculata_contig40291.10434.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 217 bits (552), Expect = 4.440e-62
Identity = 114/291 (39.18%), Postives = 180/291 (61.86%), Query Frame = 1
Query:   19 KSLYGLKQSSRNWNNTLDDFLVGIGLNRSTTDSCLYVSRDEGGETNLLVAVYVDSLVIAGRR-EKVDEFKHNISQHFKMKDLGSLSRVMGIEVRRDCPNGTITISQGSYIREVLKRYGFEECRGVATPVEEKVK-ISAPESTDKSSDSKPLGAVLSTEYRGMVGSLTYASVRTRSDIAYAVHQAVRRMGDPCREDFSTCKRIFRYLSTMSDLGITFGGRSNGHRLEGFVDADWAQDVEDRKTATGYVFELNGGAISWCSKKQQLVTWSNSEVEYVAAGEAGKETVYLRELL 885
            KSLYGLKQSSR WN+ LD+ L  IG  ++ +D C+YV  ++G     +VA++VD +++AG+  EK+ + K +I++ F++KD+G L  ++G++V ++  +  + I Q +Y   ++K+YG E C+ V TPV+   K +SA E ++  +           E++  VGSL Y S  TR DI +AV+   +   +P  E ++  KRIFRYL    + G+ +   +N   + GF DADWA D+ DRK+ +GY F++NG A+SW SKKQ  V  S +  EYVA   A +E +++R+LL
Sbjct:  293 KSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKE---------EHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAAAEYVALSAAAQEALWMRQLL 569          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40291.10434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Z7AL20_9LAMI7.040e-6639.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9M6E1_PARCT1.040e-6439.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9KES8_PARCT2.100e-6340.47Retrovirus-related Pol poly from transposon TNT 1-... [more]
W8BWJ0_CERCA2.170e-6342.18Retrovirus-related Pol polyprotein from transposon... [more]
A0A438CNG4_VITVI8.150e-6341.58Retrovirus-related Pol polyprotein from transposon... [more]
A5BYJ3_VITVI8.880e-6340.55Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
H3GB98_PHYRM2.190e-6237.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151R6U8_CAJCA2.430e-6238.98Retrovirus-related Pol polyprotein from transposon... [more]
A0A5D6YB57_9STRA2.480e-6238.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9HZ03_PARCT4.440e-6239.18Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40291contigH-paniculata_contig40291:126..1070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.4
Seed ortholog evalue1.5e-52
Seed eggNOG ortholog164328.Phyra85518
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size894
Cds size894
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930233.7027826-CDS-H-paniculata_contig40291:125..5431622930233.7027826-CDS-H-paniculata_contig40291:125..543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40291 126..543 -
1691481202.6265616-CDS-H-paniculata_contig40291:125..5431691481202.6265616-CDS-H-paniculata_contig40291:125..543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40291 126..543 -
1622930233.7311785-CDS-H-paniculata_contig40291:594..10701622930233.7311785-CDS-H-paniculata_contig40291:594..1070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40291 595..1070 -
1691481202.637099-CDS-H-paniculata_contig40291:594..10701691481202.637099-CDS-H-paniculata_contig40291:594..1070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40291 595..1070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40291.10434.1prot_H-paniculata_contig40291.10434.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40291 126..1070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40291.10434.1

>prot_H-paniculata_contig40291.10434.1 ID=prot_H-paniculata_contig40291.10434.1|Name=mRNA_H-paniculata_contig40291.10434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=298bp
FVRRPRKSLYGLKQSSRNWNNTLDDFLVGIGLNRSTTDSCLYVSRDEGGE
TNLLVAVYVDSLVIAGRREKVDEFKHNISQHFKMKDLGSLSRVMGIEVRR
DCPNGTITISQGSYIREVLKRYGFEECRGVATPVEEKVKISAPESTDKSS
DSKPLGAVLSTEYRGMVGSLTYASVRTRSDIAYAVHQAVRRMGDPCREDF
STCKRIFRYLSTMSDLGITFGGRSNGHRLEGFVDADWAQDVEDRKTATGY
VFELNGGAISWCSKKQQLVTWSNSEVEYVAAGEAGKETVYLRELLGPI
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mRNA from alignment at H-paniculata_contig40291:126..1070-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40291.10434.1 ID=mRNA_H-paniculata_contig40291.10434.1|Name=mRNA_H-paniculata_contig40291.10434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=945bp|location=Sequence derived from alignment at H-paniculata_contig40291:126..1070- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGTGCGCCGCCCGCGTAAAAGCCTGTACGGCCTCAAGCAGAGCAGCCG AAACTGGAACAACACTCTTGACGATTTTCTTGTTGGGATAGGACTCAACC GTTCCACTACCGACTCATGCCTGTACGTTTCCCGCGACGAAGGGGGAGAG ACAAACCTTCTGGTGGCCGTGTATGTTGATAGCCTGGTCATTGCTGGCCG CCGTGAGAAAGTAGACGAGTTCAAGCATAACATAAGTCAGCATTTTAAGA TGAAAGACTTGGGCTCTCTCTCGCGTGTGATGGGAATAGAAGTACGACGT GACTGCCCTAATGGTACCATAACCATCTCGCAGGGTAGCTACATCCGCGA GGTACTAAAAAGATACGGTTTTGAGGAGTGTCGAGGAGTAGCCACCCCTG TAGAGGAAAAAGTGAAGATTTCAGCACCCGAGTCGACCGACAAGTCCTCT GATTCGAAGCCACTTGGAGCTGTACTGTCGGACATAGGCGCATGAGTACA AGAAAGCAGCAGAGGGAGAAGTGGCAGTTCAACTGAATACAGAGGCATGG TAGGATCACTCACGTACGCCTCGGTAAGAACTAGGTCTGATATAGCATAC GCGGTACACCAAGCAGTACGTCGTATGGGAGACCCATGTCGGGAAGACTT CAGTACATGCAAGCGCATTTTTCGTTATCTCAGTACTATGTCTGACCTCG GCATCACGTTCGGCGGTAGGAGTAATGGTCACCGTCTGGAAGGATTCGTT GATGCTGATTGGGCGCAAGATGTCGAGGACCGAAAGACCGCAACAGGATA CGTTTTCGAGCTGAACGGTGGTGCGATAAGTTGGTGCTCTAAGAAGCAAC AGCTAGTCACATGGTCCAATTCAGAGGTAGAGTACGTTGCTGCAGGAGAA GCGGGAAAGGAGACGGTATATCTTAGGGAGCTACTAGGACCAATA
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Coding sequence (CDS) from alignment at H-paniculata_contig40291:126..1070-

>mRNA_H-paniculata_contig40291.10434.1 ID=mRNA_H-paniculata_contig40291.10434.1|Name=mRNA_H-paniculata_contig40291.10434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1788bp|location=Sequence derived from alignment at H-paniculata_contig40291:126..1070- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGTGCGCCGCCCGCGTAAAAGCCTGTACGGCCTCAAGCAGAGCAGCCG
AAACTGGAACAACACTCTTGACGATTTTCTTGTTGGGATAGGACTCAACC
GTTCCACTACCGACTCATGCCTGTACGTTTCCCGCGACGAAGGGGGAGAG
ACAAACCTTCTGGTGGCCGTGTATGTTGATAGCCTGGTCATTGCTGGCCG
CCGTGAGAAAGTAGACGAGTTCAAGCATAACATAAGTCAGCATTTTAAGA
TGAAAGACTTGGGCTCTCTCTCGCGTGTGATGGGAATAGAAGTACGACGT
GACTGCCCTAATGGTACCATAACCATCTCGCAGGGTAGCTACATCCGCGA
GGTACTAAAAAGATACGGTTTTGAGGAGTGTCGAGGAGTAGCCACCCCTG
TAGAGGAAAAAGTGAAGATTTCAGCACCCGAGTCGACCGACAAGTCCTCT
GATTCGAAGCCACTTGGAGCTGTACTTTTGTGCGCCGCCCGCGTAAAAGC
CTGTACGGCCTCAAGCAGAGCAGCCGAAACTGGAACAACACTCTTGACGA
TTTTCTTGTTGGGATAGGACTCAACCGTTCCACTACCGACTCATGCCTGT
ACGTTTCCCGCGACGAAGGGGGAGAGACAAACCTTCTGGTGGCCGTGTAT
GTTGATAGCCTGGTCATTGCTGGCCGCCGTGAGAAAGTAGACGAGTTCAA
GCATAACATAAGTCAGCATTTTAAGATGAAAGACTTGGGCTCTCTCTCGC
GTGTGATGGGAATAGAAGTACGACGTGACTGCCCTAATGGTACCATAACC
ATCTCGCAGGGTAGCTACATCCGCGAGGTACTAAAAAGATACGGTTTTGA
GGAGTGTCGAGGAGTAGCCACCCCTGTAGAGGAAAAAGTGAAGATTTCAG
CACCCGAGTCGACCGACAAGTCCTCTGATTCGAAGCCACTTGGAGCTGTA
CTTTCAACTGAATACAGAGGCATGGTAGGATCACTCACGTACGCCTCGGT
AAGAACTAGGTCTGATATAGCATACGCGGTACACCAAGCAGTACGTCGTA
TGGGAGACCCATGTCGGGAAGACTTCAGTACATGCAAGCGCATTTTTCGT
TATCTCAGTACTATGTCTGACCTCGGCATCACGTTCGGCGGTAGGAGTAA
TGGTCACCGTCTGGAAGGATTCGTTGATGCTGATTGGGCGCAAGATGTCG
AGGACCGAAAGACCGCAACAGGATACGTTTTCGAGCTGAACGGTGGTGCG
ATAAGTTGGTGCTCTAAGAAGCAACAGCTAGTCACATGGTCCAATTCAGA
GGTAGAGTACGTTGCTGCAGGAGAAGCGGGAAAGGAGACGGTATATCTTA
GGGAGCTACTAGGACCAATATTCAACTGAATACAGAGGCATGGTAGGATC
ACTCACGTACGCCTCGGTAAGAACTAGGTCTGATATAGCATACGCGGTAC
ACCAAGCAGTACGTCGTATGGGAGACCCATGTCGGGAAGACTTCAGTACA
TGCAAGCGCATTTTTCGTTATCTCAGTACTATGTCTGACCTCGGCATCAC
GTTCGGCGGTAGGAGTAATGGTCACCGTCTGGAAGGATTCGTTGATGCTG
ATTGGGCGCAAGATGTCGAGGACCGAAAGACCGCAACAGGATACGTTTTC
GAGCTGAACGGTGGTGCGATAAGTTGGTGCTCTAAGAAGCAACAGCTAGT
CACATGGTCCAATTCAGAGGTAGAGTACGTTGCTGCAGGAGAAGCGGGAA
AGGAGACGGTATATCTTAGGGAGCTACTAGGACCAATA
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