mRNA_H-paniculata_contig40251.10427.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40251.10427.1
Unique NamemRNA_H-paniculata_contig40251.10427.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig40251.10427.1 vs. uniprot
Match: D7G2T3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T3_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 5.720e-72
Identity = 123/181 (67.96%), Postives = 141/181 (77.90%), Query Frame = 1 
Query:    1 VDKTTSLATGPSRYTRLLYFRQQRRFRTDGSSF----GSEINKKIRGRVRTDELDSGR------QKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDMCVTGFTDE*KNVKMIMYRDPDFNVDQMQTTMRHIFLDE 513
            +DKTTS ATG   +TRLL F        +GS+F    GS+I KKIRG+ RT+EL   +      QKH+DD +ISGDGQAAF  LNLNYNKVTDEVIRATMEEL+NTPME GQ PD YFNQKHLLRHK ++MG+TI DR F+D+CVTGFTDE KNVKMIMYRDPDF VD+MQTTMR +FLDE
Sbjct:    1 MDKTTSSATGLPSFTRLLCFNCGEDTTGNGSAFESAFGSDI-KKIRGQARTNELRLRKTRRQLEQKHDDDTDISGDGQAAFEALNLNYNKVTDEVIRATMEELINTPMETGQTPDVYFNQKHLLRHKAEEMGKTILDRSFRDICVTGFTDEEKNVKMIMYRDPDFKVDKMQTTMRLMFLDE 180
[Close]
BLAST of mRNA_H-paniculata_contig40251.10427.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 1.050e-61
Identity = 102/117 (87.18%), Postives = 111/117 (94.87%), Query Frame = 1 
Query:  163 QKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDMCVTGFTDE*KNVKMIMYRDPDFNVDQMQTTMRHIFLDE 513
            QKHEDD++ISGDGQAAF+ELNLNYNKVTDEVIRATMEEL+NTPMEP QNPDDYFNQKHLLRHK +KMGETISD YF D CVTGFT+E K+VKMIMYRDPDFNVD+MQTTMRH+FLDE
Sbjct:   81 QKHEDDSKISGDGQAAFQELNLNYNKVTDEVIRATMEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDE 197
[Close]
BLAST of mRNA_H-paniculata_contig40251.10427.1 vs. uniprot
Match: A0A6H5JLQ5_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ5_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 1.900e-50
Identity = 84/115 (73.04%), Postives = 96/115 (83.48%), Query Frame = 1 
Query:  169 HEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDMCVTGFTDE*KNVKMIMYRDPDFNVDQMQTTMRHIFLDE 513
            HEDD  ISGDGQAAF EL  NY++VTDEVIRA MEEL N PM PG+NPDDYFNQKHLLR ++ KMGE ISDR FKD+CV GF+DE K+VK+I+ RDP FNV  MQ+TMR+IFLDE
Sbjct:   38 HEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLIVLRDPTFNVLDMQSTMRNIFLDE 152
[Close]
BLAST of mRNA_H-paniculata_contig40251.10427.1 vs. uniprot
Match: A0A6H5KVX0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX0_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 2.950e-50
Identity = 84/117 (71.79%), Postives = 99/117 (84.62%), Query Frame = 1 
Query:  163 QKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDMCVTGFTDE*KNVKMIMYRDPDFNVDQMQTTMRHIFLDE 513
            QKHEDD  ISGDGQAAF EL  NY++VTDEVIRA MEEL N PM PG+NPDDYFNQK+LLR ++ KMGE ISDR FKD+CV GF+DE K+VK++++RDP FNV  MQ+TMR+IFLDE
Sbjct:  103 QKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKYLLRTQLDKMGEAISDRRFKDICVRGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDE 219
[Close]
BLAST of mRNA_H-paniculata_contig40251.10427.1 vs. uniprot
Match: A0A6H5L2I7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2I7_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 6.880e-50
Identity = 81/117 (69.23%), Postives = 98/117 (83.76%), Query Frame = 1 
Query:  163 QKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDMCVTGFTDE*KNVKMIMYRDPDFNVDQMQTTMRHIFLDE 513
            QKH+DD  I GDGQA+F EL  NY++VTDEVIRA MEEL N PM PG+NPDDYFNQKHLLR ++ KMGE ISDR FKD+CV GF+DE K+VK++++RDP FNV  MQ+T+R+IFLDE
Sbjct:   60 QKHKDDTVIRGDGQASFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLVVFRDPTFNVLNMQSTVRNIFLDE 176
[Close]
BLAST of mRNA_H-paniculata_contig40251.10427.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 4.620e-49
Identity = 84/117 (71.79%), Postives = 99/117 (84.62%), Query Frame = 1 
Query:  163 QKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDMCVTGFTDE*KNVKMIMYRDPDFNVDQMQTTMRHIFLDE 513
            QKHEDD  ISGDGQAAF EL  NY++VTDEVIRA MEEL N PM PG+NPD+YFNQKHLLR ++ KMGE ISDR FKD+CV GF+DE K+VK++++RDP FNV  MQ+TMR+IFLDE
Sbjct:  103 QKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDNYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDE 219
[Close]
BLAST of mRNA_H-paniculata_contig40251.10427.1 vs. uniprot
Match: A0A6H5JXA1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA1_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 2.960e-48
Identity = 77/116 (66.38%), Postives = 99/116 (85.34%), Query Frame = 1 
Query:  166 KHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDMCVTGFTDE*KNVKMIMYRDPDFNVDQMQTTMRHIFLDE 513
            KHEDD  +SGDGQAAF EL  NYN+VTDEVIRA +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKD+CV GF+++ K++KM+++RDP F+V QMQ TMR+IFLDE
Sbjct:  102 KHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDE 217
[Close]
BLAST of mRNA_H-paniculata_contig40251.10427.1 vs. uniprot
Match: A0A6H5LFM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFM4_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 3.860e-48
Identity = 77/116 (66.38%), Postives = 99/116 (85.34%), Query Frame = 1 
Query:  166 KHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDMCVTGFTDE*KNVKMIMYRDPDFNVDQMQTTMRHIFLDE 513
            KHED+  +SGDGQAAF EL  NYN+VTDEVIRA +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKD+CV GF+++ K++KMI++RDP F+V QMQ TMR+IFLDE
Sbjct:  102 KHEDETGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDCKDIKMIVFRDPSFDVQQMQATMRNIFLDE 217
[Close]
BLAST of mRNA_H-paniculata_contig40251.10427.1 vs. uniprot
Match: A0A6H5K7P0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P0_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 1.550e-46
Identity = 76/116 (65.52%), Postives = 98/116 (84.48%), Query Frame = 1 
Query:  166 KHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDMCVTGFTDE*KNVKMIMYRDPDFNVDQMQTTMRHIFLDE 513
            KHEDD  +SGDGQAAF EL  NYN+VTDEVIRA +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKD+CV GF+++ K++KM+++RDP F V QMQ T+R+IFLDE
Sbjct:  102 KHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFEVQQMQATVRNIFLDE 217
[Close]
BLAST of mRNA_H-paniculata_contig40251.10427.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.920e-46
Identity = 84/117 (71.79%), Postives = 98/117 (83.76%), Query Frame = 1 
Query:  163 QKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDMCVTGFTDE*KNVKMIMYRDPDFNVDQMQTTMRHIFLDE 513
            QKHEDD  ISGDGQAAF EL  NY++VTDEVIRA MEEL N PM PG+NPDDYFNQKHLLR ++ KMGE ISDR FKD+CV GF+DE K+VK++++RDP FNV  M +TMR+IFLDE
Sbjct:  121 QKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDE 237
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40251.10427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2T3_ECTSI5.720e-7267.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW66_9PHAE1.050e-6187.18CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JLQ5_9PHAE1.900e-5073.04CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KVX0_9PHAE2.950e-5071.79CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L2I7_9PHAE6.880e-5069.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF66_9PHAE4.620e-4971.79CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JXA1_9PHAE2.960e-4866.38CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LFM4_9PHAE3.860e-4866.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7P0_9PHAE1.550e-4665.52CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5L580_9PHAE1.920e-4671.79CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40251contigH-paniculata_contig40251:73..1398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size513
Cds size159
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40251.10427.1prot_H-paniculata_contig40251.10427.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40251 160..318 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930232.9206018-UTR-H-paniculata_contig40251:72..1591622930232.9206018-UTR-H-paniculata_contig40251:72..159Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40251 73..159 -
1691481202.253311-UTR-H-paniculata_contig40251:72..1591691481202.253311-UTR-H-paniculata_contig40251:72..159Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40251 73..159 -
1622930232.9670954-UTR-H-paniculata_contig40251:318..4201622930232.9670954-UTR-H-paniculata_contig40251:318..420Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40251 319..420 -
1691481202.2779562-UTR-H-paniculata_contig40251:318..4201691481202.2779562-UTR-H-paniculata_contig40251:318..420Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40251 319..420 -
1622930232.9863071-UTR-H-paniculata_contig40251:1233..13981622930232.9863071-UTR-H-paniculata_contig40251:1233..1398Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40251 1234..1398 -
1691481202.286699-UTR-H-paniculata_contig40251:1233..13981691481202.286699-UTR-H-paniculata_contig40251:1233..1398Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40251 1234..1398 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930232.947792-CDS-H-paniculata_contig40251:159..3181622930232.947792-CDS-H-paniculata_contig40251:159..318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40251 160..318 -
1691481202.270053-CDS-H-paniculata_contig40251:159..3181691481202.270053-CDS-H-paniculata_contig40251:159..318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40251 160..318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40251.10427.1

>prot_H-paniculata_contig40251.10427.1 ID=prot_H-paniculata_contig40251.10427.1|Name=mRNA_H-paniculata_contig40251.10427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDMCVTGFT
DE*
back to top

mRNA from alignment at H-paniculata_contig40251:73..1398-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40251.10427.1 ID=mRNA_H-paniculata_contig40251.10427.1|Name=mRNA_H-paniculata_contig40251.10427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1326bp|location=Sequence derived from alignment at H-paniculata_contig40251:73..1398- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGACAAGACGACGAGTTTAGCAACCGGGCCTTCCAGGTACACCAGACT
TTTGTACTTCCGACAGCAGCGAAGGTTCAGGACGGACGGTTCAAGTTTCG
GTTCGGAGATCAACAAGAAGATACGGGGTCGAGTCAGGACAGACGAGCTC
GACTCAGGAAGACAAGTAAGAGGAATACGGTCTCACGCACACACACAGGA
CCTTCACAACACACACCTAATCTGGTAGTGGGAGGAGCTCCTTTAGTGCT
GTAGTCACCAACACTTCCCTTGGAGAAAAAGGCTCGCAAATCGAGCAAAG
GACTGCTGTATCGACAGCAGGGACGGTCCACACCGCAGTCCTATACACCC
ATCCGCGAGGAGAGGGTAACAGGAGCGGGGCCGGGAAAAAGACGACCTAC
AACCGTAGTCCTATACACCGATCCGAGAGGAGAGGGTAGCAGGAACGGGG
TCGGGACGGTCCACACCGTAGTCCTATACACCCATCCGCGAGGAGAGGGT
AACAGGAGCGGGGCCGGGAAAAGACGACCTCAACCGTAGTCCTTTACACA
GGAACGGGGTCGGGAAGCCTCGGGCTCACACCACGAGCAAACAACTCCTA
CGACAGGAGGGATCGCTGCGACAGCAGGAAACACCAGCATCAGCCTGTAC
ACCACAAGGCAACAGGAGCGCATCGCGATAGGAAAGGCACATCAAGATGG
GTGATAATCCCCCCGTCGACAACACCACTAACCTCGCCAACACCATTCGA
GGACTGAAGAAGTTCGATGGAAGGAACCCAGCCGAATTCAAAGGTTGGAT
GAAGAAGCTCTGCGTCGTCCTGGGAGTTACACACAGGGACATTCTCCCGC
TGCTTAAAGACGAACGCAGTCCTGCCGAAAAGGATACTGCTGCCTACGCC
GCCTACTGCAAGTCGAACGAGGACTTGTACGCCATACTCTACTTGTTAGT
GGAACTACCGGCGGCCCTTTCGGTGCAGAAGCACGAGGATGACAACGAGA
TCAGCGGAGACGGACAGGCGGCCTTCAGGGAACTGAACCTGAACTACAAC
AAGGTTACGGACGAAGTGATTCGAGCCACCATGGAGGAGCTGGTCAACAC
GCCCATGGAGCCAGGACAGAACCCGGACGACTACTTCAATCAGAAGCACC
TCCTTCGACACAAGGTCCAGAAGATGGGGGAGACCATCTCGGACCGCTAC
TTCAAGGATATGTGCGTCACAGGATTCACCGACGAGTAAAAGAACGTGAA
GATGATCATGTACCGCGACCCAGACTTTAACGTCGACCAGATGCAGACCA
CCATGCGGCACATATTTCTGGACGAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig40251:73..1398-

>mRNA_H-paniculata_contig40251.10427.1 ID=mRNA_H-paniculata_contig40251.10427.1|Name=mRNA_H-paniculata_contig40251.10427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig40251:73..1398- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAGCTGGTCAACACGCCCATGGAGCCAGGACAGAACCCGGACGA
CTACTTCAATCAGAAGCACCTCCTTCGACACAAGGTCCAGAAGATGGGGG
AGACCATCTCGGACCGCTACTTCAAGGATATGTGCGTCACAGGATTCACC
GACGAGTAAATGGAGGAGCTGGTCAACACGCCCATGGAGCCAGGACAGAA
CCCGGACGACTACTTCAATCAGAAGCACCTCCTTCGACACAAGGTCCAGA
AGATGGGGGAGACCATCTCGGACCGCTACTTCAAGGATATGTGCGTCACA
GGATTCACCGACGAGTAA
back to top