mRNA_H-paniculata_contig4024.10425.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Match: D7G5C6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5C6_ECTSI) HSP 1 Score: 194 bits (494), Expect = 1.890e-57 Identity = 105/118 (88.98%), Postives = 113/118 (95.76%), Query Frame = 2
Query: 2 VFNVFRSVIAYDTSIKTIPNLAK-AEEEIMVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALEDA 352
VFNVF+S IAYDTSIK++PNLAK EE MVEYEFEPDTK+EV++DMYEYL+ASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALE+A
Sbjct: 187 VFNVFKSAIAYDTSIKSLPNLAKEGGEEQMVEYEFEPDTKEEVMQDMYEYLVASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALEEA 304
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Match: A0A835Z5Y6_9STRA (F1 complex, gamma subunit of ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Y6_9STRA) HSP 1 Score: 169 bits (427), Expect = 2.180e-47 Identity = 90/115 (78.26%), Postives = 103/115 (89.57%), Query Frame = 2
Query: 2 VFNVFRSVIAYDTSIKTIPNLAKAEEEIMVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALE 346
V+ FRS IAY+TS K + NL K E+E MVEYEFEPDTK EVL+DMYE+ LAS ++H+LME+ATSEQSSRMNAMENASKNAGEMI+SLTL+YNRARQSRITTELIEIISGA+ALE
Sbjct: 192 VYQRFRSAIAYETSCKLLINLTKLEQEPMVEYEFEPDTKSEVLQDMYEFTLASSLYHALMENATSEQSSRMNAMENASKNAGEMIESLTLLYNRARQSRITTELIEIISGAAALE 306
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Match: A0A7R9UBL1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBL1_9STRA) HSP 1 Score: 148 bits (373), Expect = 1.160e-39 Identity = 82/116 (70.69%), Postives = 97/116 (83.62%), Query Frame = 2
Query: 2 VFNVFRSVIAYDTSIKTI-PNLAKAEEEIMVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALE 346
V+N F S I+Y T + T+ P L + E E M EYEFEPD K+E++ D+YEYLL S++++ LMESATSEQSSRMNAMENASKNAGE+ID LTL YNRARQ+RITTELIEIISGASALE
Sbjct: 164 VYNEFVSAISYTTRLATLAPLLKEGEAEPMPEYEFEPDNKNEIMVDLYEYLLTSKIYYGLMESATSEQSSRMNAMENASKNAGELIDKLTLQYNRARQARITTELIEIISGASALE 279
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Match: A0A7S2WGF0_9STRA (ATP synthase subunit gamma n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WGF0_9STRA) HSP 1 Score: 144 bits (363), Expect = 6.660e-38 Identity = 78/117 (66.67%), Postives = 94/117 (80.34%), Query Frame = 2
Query: 2 VFNVFRSVIAYDTSIKTI-PNLAKAEEEIMVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALED 349
++N +++ Y K I P + E+E M+ YEFEPDTK EVL+D++EYLL SQ++HSLM+ A +EQSSRM AMENASKNAGEMI SLTL YNRARQ+RITTELIEIISGASALED
Sbjct: 190 IYNAYKNAATYHQMYKVIKPFSGEGEDEAMLAYEFEPDTKSEVLQDLHEYLLTSQIYHSLMDGAAAEQSSRMTAMENASKNAGEMIHSLTLQYNRARQARITTELIEIISGASALED 306
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Match: A0A7S1UJC2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJC2_9STRA) HSP 1 Score: 142 bits (359), Expect = 2.200e-37 Identity = 79/116 (68.10%), Postives = 96/116 (82.76%), Query Frame = 2
Query: 2 VFNVFRSVIAYDTSIKTI-PNLAKAEEEIMVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALE 346
V+N F S IAY+T + T+ P L + E M EYEFEPD K+EV+ D++EY+L +++++ LME ATSEQSSRMNAMENASKNAGE+ID LTL YNRARQ+RITTELIEIISGASALE
Sbjct: 183 VYNEFVSAIAYNTRLATVAPMLKEDVAEPMPEYEFEPDNKNEVMVDLFEYMLTTKIYYGLMEGATSEQSSRMNAMENASKNAGELIDKLTLQYNRARQARITTELIEIISGASALE 298
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Match: A0A6T7FHU0_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7FHU0_9STRA) HSP 1 Score: 143 bits (361), Expect = 2.390e-37 Identity = 81/117 (69.23%), Postives = 91/117 (77.78%), Query Frame = 2
Query: 2 VFNVFRSVIAYDTSIKTI-PNLAKAEEEIMVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALED 349
V+N F + Y K I P + E+E M+ YEFEPDTK EV+ DMYEYLL SQ++HS M+ A SEQS+RM AMENASKNAGEMID LTL YNRARQSRITTELIEIISGASALED
Sbjct: 215 VYNSFVNKATYQQKYKIIKPFTGEGEDEPMMAYEFEPDTKGEVMADMYEYLLTSQIFHSFMDGAASEQSARMTAMENASKNAGEMIDKLTLKYNRARQSRITTELIEIISGASALED 331
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Match: A0A7S3Q9N9_9STRA (ATP synthase subunit gamma n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q9N9_9STRA) HSP 1 Score: 143 bits (360), Expect = 2.500e-37 Identity = 80/117 (68.38%), Postives = 91/117 (77.78%), Query Frame = 2
Query: 5 FNVFRSVIAYDTSIKTI-PNLAKAEEEIMVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALEDA 352
+N + + Y K I P + EEE M EYEFEPDTK EVL D YEY+L SQM+HS M+ A +EQSSRM AMENAS+NAGE+IDSLTL YNRARQSRITTELIEIISGA+ALEDA
Sbjct: 203 YNSYVNAAVYHQKYKLIRPLTGEGEEEPMTEYEFEPDTKSEVLVDFYEYMLTSQMFHSFMDGACAEQSSRMTAMENASQNAGELIDSLTLKYNRARQSRITTELIEIISGAAALEDA 319
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Match: A0A7S2N4W1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N4W1_9STRA) HSP 1 Score: 140 bits (354), Expect = 1.490e-36 Identity = 80/115 (69.57%), Postives = 90/115 (78.26%), Query Frame = 2
Query: 5 FNVFRSVIAYDTSIKTI-PNLAKAEEEIMVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALE 346
+N F + Y K I P + E+E M+ YEFEPDTK EVL D+YEYLL SQ++HS M+ A SEQSSRM AMENASKNAGEMIDSLTL YNRARQ+RITTELIEIISGASALE
Sbjct: 193 YNSFINSAVYTQKYKLIKPFSGEGEDEPMMSYEFEPDTKSEVLTDLYEYLLTSQVYHSFMDGAASEQSSRMAAMENASKNAGEMIDSLTLQYNRARQARITTELIEIISGASALE 307
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Match: A0A7S0FVP8_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FVP8_9STRA) HSP 1 Score: 138 bits (348), Expect = 7.670e-36 Identity = 76/115 (66.09%), Postives = 92/115 (80.00%), Query Frame = 2
Query: 5 FNVFRSVIAYDTSIKTI-PNLAKAEEEIMVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALE 346
+N + + Y + K I P + E+E M+ YEFEPDTK EV+ D+YEYLL SQ++HS M+ A SEQSSRM+AMENASKNAGEMI+SL+L YNRARQ+RITTELIEIISGASALE
Sbjct: 176 YNTYVNAAVYKQNYKIIKPFAGEGEDEPMMAYEFEPDTKSEVMVDLYEYLLTSQLFHSFMDGAASEQSSRMSAMENASKNAGEMIESLSLRYNRARQARITTELIEIISGASALE 290
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Match: W7TPQ0_9STRA (Atp synthase gamma n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPQ0_9STRA) HSP 1 Score: 137 bits (345), Expect = 1.840e-35 Identity = 76/115 (66.09%), Postives = 92/115 (80.00%), Query Frame = 2
Query: 2 VFNVFRSVIAYDTSIKTIPNLAKAEEEIMVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENASKNAGEMIDSLTLIYNRARQSRITTELIEIISGASALE 346
VFN FRS IAY+ ++KT+ A E VEYEFEPDTK EVL+DMYE +A+ M+ S++ESA +EQSSRMNAMENASKN ++I L++ YNRARQSRITTEL+EIISGASALE
Sbjct: 170 VFNRFRSAIAYEATVKTLYPPAALTGEPYVEYEFEPDTKTEVLDDMYEMAIATTMFTSMLESAAAEQSSRMNAMENASKNGEDLIKELSIQYNRARQSRITTELVEIISGASALE 284 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4024.10425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4024.10425.1 >prot_H-paniculata_contig4024.10425.1 ID=prot_H-paniculata_contig4024.10425.1|Name=mRNA_H-paniculata_contig4024.10425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp MVEYEFEPDTKDEVLEDMYEYLLASQMWHSLMESATSEQSSRMNAMENASback to top mRNA from alignment at H-paniculata_contig4024:13669..14965- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4024.10425.1 ID=mRNA_H-paniculata_contig4024.10425.1|Name=mRNA_H-paniculata_contig4024.10425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1297bp|location=Sequence derived from alignment at H-paniculata_contig4024:13669..14965- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4024:13669..14965- >mRNA_H-paniculata_contig4024.10425.1 ID=mRNA_H-paniculata_contig4024.10425.1|Name=mRNA_H-paniculata_contig4024.10425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig4024:13669..14965- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |