mRNA_H-paniculata_contig4024.10424.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4024.10424.1
Unique NamemRNA_H-paniculata_contig4024.10424.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4024.10424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4024contigH-paniculata_contig4024:11339..11698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930232.2570698-CDS-H-paniculata_contig4024:11338..116501622930232.2570698-CDS-H-paniculata_contig4024:11338..11650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4024 11339..11650 +
1691481201.9829557-CDS-H-paniculata_contig4024:11338..116501691481201.9829557-CDS-H-paniculata_contig4024:11338..11650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4024 11339..11650 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930232.2895424-UTR-H-paniculata_contig4024:11650..116981622930232.2895424-UTR-H-paniculata_contig4024:11650..11698Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4024 11651..11698 +
1691481202.0039337-UTR-H-paniculata_contig4024:11650..116981691481202.0039337-UTR-H-paniculata_contig4024:11650..11698Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4024 11651..11698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4024.10424.1prot_H-paniculata_contig4024.10424.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4024 11339..11650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4024.10424.1

>prot_H-paniculata_contig4024.10424.1 ID=prot_H-paniculata_contig4024.10424.1|Name=mRNA_H-paniculata_contig4024.10424.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
SPRASPILSGPIKTRTRECELLNTKVDSRACPGSILHNNFLNLEYRFLFL
DPTKGARSVCLNFGVLIVFRRSILFDRQTDHNCTDIHMEQLDFLAEEGKE
VDN*
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mRNA from alignment at H-paniculata_contig4024:11339..11698+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4024.10424.1 ID=mRNA_H-paniculata_contig4024.10424.1|Name=mRNA_H-paniculata_contig4024.10424.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at H-paniculata_contig4024:11339..11698+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCCTCGCGCTTCGCCTATTTTGAGCGGACCAATTAAAACAAGAACAAG
AGAATGTGAACTCCTGAATACTAAAGTAGACAGCAGAGCATGCCCTGGGA
GCATCTTGCACAACAATTTTCTGAATCTGGAATATCGGTTTCTGTTTCTC
GACCCCACAAAAGGTGCGCGTTCTGTGTGCCTAAACTTCGGTGTTTTGAT
CGTTTTTCGCCGTTCAATATTGTTTGACCGGCAGACAGACCACAACTGTA
CCGACATACACATGGAACAACTAGATTTCCTTGCGGAGGAAGGAAAGGAG
GTCGACAATTAATATTCTCGCGCCCAGCATTTGAGGGTTGTGCTGTGTGC
ATGGTGGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4024:11339..11698+

>mRNA_H-paniculata_contig4024.10424.1 ID=mRNA_H-paniculata_contig4024.10424.1|Name=mRNA_H-paniculata_contig4024.10424.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig4024:11339..11698+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCCTCGCGCTTCGCCTATTTTGAGCGGACCAATTAAAACAAGAACAAG
AGAATGTGAACTCCTGAATACTAAAGTAGACAGCAGAGCATGCCCTGGGA
GCATCTTGCACAACAATTTTCTGAATCTGGAATATCGGTTTCTGTTTCTC
GACCCCACAAAAGGTGCGCGTTCTGTGTGCCTAAACTTCGGTGTTTTGAT
CGTTTTTCGCCGTTCAATATTGTTTGACCGGCAGACAGACCACAACTGTA
CCGACATACACATGGAACAACTAGATTTCCTTGCGGAGGAAGGAAAGGAG
GTCGACAATTAATCCCCTCGCGCTTCGCCTATTTTGAGCGGACCAATTAA
AACAAGAACAAGAGAATGTGAACTCCTGAATACTAAAGTAGACAGCAGAG
CATGCCCTGGGAGCATCTTGCACAACAATTTTCTGAATCTGGAATATCGG
TTTCTGTTTCTCGACCCCACAAAAGGTGCGCGTTCTGTGTGCCTAAACTT
CGGTGTTTTGATCGTTTTTCGCCGTTCAATATTGTTTGACCGGCAGACAG
ACCACAACTGTACCGACATACACATGGAACAACTAGATTTCCTTGCGGAG
GAAGGAAAGGAGGTCGACAATTAA
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