mRNA_H-paniculata_contig4020.10414.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4020.10414.1
Unique NamemRNA_H-paniculata_contig4020.10414.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4020.10414.1 vs. uniprot
Match: A0A6H5L219_9PHAE (Holocytochrome c-type synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L219_9PHAE)

HSP 1 Score: 313 bits (801), Expect = 2.630e-99
Identity = 159/240 (66.25%), Postives = 177/240 (73.75%), Query Frame = 2 
Query:  542 STASTETPA----YNALNNEFVYGQEKAPGQTIPLSTSRQQSSIPKGDFNPIHQPT-DASTWVYPSEQQYYNAIKRKGYNASANDMPMTLAIHNAVNEQGWAMVTEWERLHGGGGV---------------VAPAPKLLRFQGRPKDISPKAWIKTNLLGYTRPFDRHDWVVKRADGSEARYVIDFYAGHMAAGSSAPVSMYLDVRPALDSVDAVVDRVRMFYGTSVRPHLSGVLDTFSS 1201
            S+A+   PA    YNA NNE+VYGQE A GQ +PLSTSRQ+SSIPK +FNP HQP  +A  WVYPSEQQYYNAIKRKGY ASA DMP TLAIHNAVNE+GW MV EWER                      V  APKLLRF GRP+D SPKAW+K+ LLGY  PFDRHDWVVKRADG+EARYVIDFYAG    GSS PV+M+LDVRPALDS DAVVDR RMFY   VRP+L+GVL+ F +
Sbjct:  164 SSATAPAPAAPELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERARXXXXXXXXXXXXXXXXXXXGVPAAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYDAVVDRTRMFYSREVRPYLAGVLNAFKN 403
[Close]
BLAST of mRNA_H-paniculata_contig4020.10414.1 vs. uniprot
Match: D8LGP6_ECTSI (Holocytochrome c-type synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP6_ECTSI)

HSP 1 Score: 308 bits (788), Expect = 6.200e-97
Identity = 160/264 (60.61%), Postives = 175/264 (66.29%), Query Frame = 2 
Query:  569 YNALNNEFVYGQEKAPGQTIPLSTSRQQSSIPKGDFNPIHQPT-DASTWVYPSEQQYYNAIKRKGYNASANDMPMTLAIHNAVNEQGWAMVTEWERLH------------------------------GGGG----------------------VVAPAPKLLRFQGRPKDISPKAWIKTNLLGYTRPFDRHDWVVKRADGSEARYVIDFYAGHMAAGSSAPVSMYLDVRPALDSVDAVVDRVRMFYGTSVRPHLSGVLDTFSS 1201
            YNA NNE+VYGQE A GQ +PLSTSRQ+SSIPK +FNP HQP  +A  WVYPSEQQYYNAIKRKGY ASA DMP TLAIHNAVNE+GW MV EWER H                              GG G                      V  PAPKL RF GRP+D SPKAW+K+ L GY  PFDRHDWVVKRADG+EARYVIDFYAG    GSS PV+M+LDVRPALDS DAVVDR RMFYG  VRP+L+GVLD F +
Sbjct:  163 YNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXXXXXXXEGFRGGEGLHPGAPQIGTPPXXXXXXXXXXVGVPAPKLFRFTGRPQDTSPKAWVKSTLFGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYDAVVDRTRMFYGREVRPYLAGVLDAFKN 426
[Close]
BLAST of mRNA_H-paniculata_contig4020.10414.1 vs. uniprot
Match: A0A835ZPE3_9STRA (Holocytochrome c-type synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPE3_9STRA)

HSP 1 Score: 228 bits (582), Expect = 3.190e-69
Identity = 115/195 (58.97%), Postives = 137/195 (70.26%), Query Frame = 2 
Query:  581 NNEFVYGQEKAPGQTIPLSTSRQQSSIPKGDFNPIHQPTDASTWVYPSEQQYYNAIKRKGYNASANDMPMTLAIHNAVNEQGWAMVTEWERLHGGGGVVAPAPKLLRFQGRPKDISPKAWIKTNLLGYTRPFDRHDWVVKRADGSEARYVIDFYAGHMAAGSSAPVSMYLDVRPALDSVDAVVDRVRMFYGTSVR 1165
            ++E V G      QT+PLST+RQ S+IPKG+  P HQP  A+ WVYPSEQQY+NA+KRKG+ A   D+P+ LAIHNAVNEQGW+ V EWE + GG       PKL  F+GRP DISPKAW KTN+LGY  PFDRHDWVV+ A G E RYVIDFYAG        PV+++LDVRPALDS DA + R  MF    +R
Sbjct:    6 SDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGD------PKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESA-GREVRYVIDFYAGK--GTPERPVALHLDVRPALDSADAALHRACMFAKEELR 191
[Close]
BLAST of mRNA_H-paniculata_contig4020.10414.1 vs. uniprot
Match: W7TBT6_9STRA (Holocytochrome c-type synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBT6_9STRA)

HSP 1 Score: 231 bits (589), Expect = 6.590e-69
Identity = 131/253 (51.78%), Postives = 161/253 (63.64%), Query Frame = 2 
Query:  404 SENAQRLRRQGSGSNGSACPIIG------PTKMAQPESRKSGEACGCPVKTDSTASTETPAYNALNNEFVYGQEKAPGQTIPLSTSRQQSSIPKGDFNPIHQPTDAST-WVYPSEQQYYNAIKRKGYNASANDMPMTLAIHNAVNEQGWAMVTEWERLHGGGGVVAPAPKLLRFQGRPKDISPKA-WIKTNLLGYTRPFDRHDWVVKRADGSEARYVIDFYAGHMAAGSSAPVSMYLDVRPALDSVDAVVDRV 1138
            S  +  +R   +G+NG    + G      P+   + ES  SG    CPV+  ++  + +P  N LNNE  Y Q   P Q +PLSTSR+ SSIPK DF P HQP  A   WVYPSEQQY+NA+K KG++    D+ + LAIHNAVNEQGW  V EWE     GG+ +  PKL RF GRP+D+SPKA W+   + GY +PFDRHDWVV+RADGSE RYVIDFY G        PVSM+LDVRPALDS+ AV  RV
Sbjct:   23 SNRSDPVRHPPTGTNGFFSALRGWFHPSNPSDSTELESNSSG----CPVQGRASPPSSSPV-NPLNNERQYSQVPQPSQAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWE-----GGLGSTPPKLKRFMGRPQDLSPKAAWLW--MCGYNKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALDSMAAVRMRV 263
[Close]
BLAST of mRNA_H-paniculata_contig4020.10414.1 vs. uniprot
Match: A0A7S3HNG9_9STRA (Holocytochrome c-type synthase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNG9_9STRA)

HSP 1 Score: 226 bits (575), Expect = 2.450e-67
Identity = 111/211 (52.61%), Postives = 137/211 (64.93%), Query Frame = 2 
Query:  542 STASTETPAYNALNNEFVYGQEKAPGQTIPLSTSRQQSSIPKGDFNPIHQPTDASTWVYPSEQQYYNAIKRKGYNASANDMPMTLAIHNAVNEQGWAMVTEWERLHGGGGVVAPAPKLLRFQGRPKDISPKAWIKTNLLGYTRPFDRHDWVVKRADGSEARYVIDFYAG--HMAAGSSAPVSMYLDVRPALDSVDAVVDRVRMFYGTSVRP 1168
            S AS+  P YN   N+FV+ Q +   Q   LS  R  S+IPKGDF P HQP     WVYPSEQQYYNA+KRKGYN S  D+P  L IHN VNE+GW+ V EWE   G      P PKL +F G+P  +SPKA +  N++GY++PFDRHDW+V+R DG E RYVIDFY G  ++      PVS+YLDVRPA DSV A+V R+   +    +P
Sbjct:   53 SAASSNNPLYNTNANDFVFDQSRTADQKANLSVKRATSTIPKGDFTPEHQPKATEKWVYPSEQQYYNAMKRKGYNPSEADIPAVLFIHNHVNEKGWSQVKEWEAYSG-----FPNPKLKKFMGKPTQLSPKARL-LNMIGYSKPFDRHDWIVERPDGQEVRYVIDFYGGARNINPSKPQPVSIYLDVRPAADSVSAIVARLSFSWRQRFQP 257
[Close]
BLAST of mRNA_H-paniculata_contig4020.10414.1 vs. uniprot
Match: A0A7S1UN93_9STRA (Holocytochrome c-type synthase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UN93_9STRA)

HSP 1 Score: 218 bits (556), Expect = 4.730e-64
Identity = 125/262 (47.71%), Postives = 153/262 (58.40%), Query Frame = 2 
Query:  521 GCPVKTDSTASTETPAYNALNNEFVYGQEKAPGQTIPLSTSRQQSSIPKGDFN-----PIHQPTDASTWVYPSEQQYYNAIKRKGYNASANDMPMTLAIHNAVNEQGWAMVTEWERLHGGGGVVAPAPKLLRFQGRPKDISPKAWIKTNLLGYTRPFDRHDWVVKRADGSEAR-YVIDFYAGHMAAGSSA--------------------------PVSMYLDVRPALDSVDAVVDRVRMFYGTSVRPHLSGVLDTFSSGTA 1210
            GCPVK   +AS+  PA  ++     + Q   P Q IPLST R  SSIP+   +     P HQPT +  WVYPSEQQ+YNA+KRKG+ A  + MP+ + IHNAVNE+GW+ V +WE LHG      P P+L+RF GRPKDISPKA++ T +LGY  PFDRHDW V R DGSE R YVIDFY G+  + +S                           P +MYLDVRPALD  DAV DR  MF    VR    G+   F+S  A
Sbjct:   49 GCPVK--HSASSSIPA--SIEQAAKHAQTPHPDQRIPLSTQRSISSIPRESSSNETPPPSHQPTSSHNWVYPSEQQFYNAMKRKGWEADESTMPLVVRIHNAVNERGWSEVCKWEALHG-----CPNPRLVRFLGRPKDISPKAFLNTYILGYRPPFDRHDWYVDRGDGSEPRRYVIDFYNGNDGSNTSKSLLSTLLQRVSGENDSTGVASAAEYRPPAMYLDVRPALDRPDAVADRTNMF----VRDAFPGLFAAFASPQA 297
[Close]
BLAST of mRNA_H-paniculata_contig4020.10414.1 vs. uniprot
Match: A0A1V9Z395_9STRA (Holocytochrome c-type synthase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z395_9STRA)

HSP 1 Score: 205 bits (521), Expect = 1.020e-59
Identity = 108/223 (48.43%), Postives = 139/223 (62.33%), Query Frame = 2 
Query:  509 GEACGCPVKTDSTASTETPAYNALNNEFVYGQEKAPGQTIPLSTSRQQSSIPKGDFNPIHQPTDASTWVYPSEQQYYNAIKRKGYNASANDMPMTLAIHNAVNEQGWAMVTEWERLHGGGGVVAPAPKLLRFQGRPKDISPKAWIKTNLLGYTR-PFDRHDWVVKRADGSEARYVIDFYAGHMAAGSSAPVSMYLDVRPALDSVDAVVDRVRMFYGTSVRPHL 1174
            G+A G        A T     NALN      Q  APGQ+ PLST+R  S+IP G + P HQ     TW YPSEQQY+NA+KRKG++    DM + ++IHN +NE+GWA V E E+       V   PKL+RF GRPKD++PKA +  N+ G    PFDRHDW+V R +G E RYVIDFY+G    G   P+S+Y+DVRPALD+V   VDR+RM +  ++ P L
Sbjct:   14 GKAAGXXXXXXXQAGTSMAGLNALNFMEPADQRVAPGQSAPLSTTRVASTIPMGSYVPAHQKEGQETWQYPSEQQYFNAMKRKGWDPQERDMKVIVSIHNTINEKGWAEVVEMEKTLHADAYVNAEPKLVRFMGRPKDLTPKARL-LNVFGMANLPFDRHDWIVDR-NGEEIRYVIDFYSGQPTPGK--PISVYMDVRPALDNVGNAVDRLRMQFHKNILPLL 232
[Close]
BLAST of mRNA_H-paniculata_contig4020.10414.1 vs. uniprot
Match: W4G7Q4_9STRA (Holocytochrome c-type synthase n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G7Q4_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.230e-58
Identity = 109/221 (49.32%), Postives = 135/221 (61.09%), Query Frame = 2 
Query:  521 GCPVKTDSTASTETPAYNALNNEFVYGQEKAPGQTIPLSTSRQQSSIPKGDFNPIHQPTDASTWVYPSEQQYYNAIKRKGYNASANDMPMTLAIHNAVNEQGWAMVTEWER-LHGG--GGVVAPAPKLLRFQGRPKDISPKAWIKTNLLGYTRPFDRHDWVVKRADGSEARYVIDFYAGHMAAGSSAPVSMYLDVRPALDSVDAVVDRVRMFYGTSVRPHL 1174
            GCPV      +      NALN          P Q +PLST R QS+IP G F P HQ     TW YPSEQQY+NA+KRKG++    DM + ++IHN +NE+GW+ V  +ER LH    G    P PKL+RF GRPKD SPKA     +     PFDRHDW+V R +G+E RYVIDFY+G    G   P+S+Y+DVRPALD+V   VDRVRM +  S+ P L
Sbjct:   16 GCPVDHSGPDAAAKSGLNALNFMEPADHTVDPKQKVPLSTHRVQSTIPMGSFVPQHQTEGQQTWQYPSEQQYFNAMKRKGWDPEERDMKVIVSIHNTINEKGWSDVVAFERTLHPDAYGSDKCPEPKLVRFMGRPKDFSPKARFLNTIGVANLPFDRHDWIVDR-NGTEVRYVIDFYSGQPVPGK--PLSVYMDVRPALDTVQNAVDRVRMQFHKSILPLL 233
[Close]
BLAST of mRNA_H-paniculata_contig4020.10414.1 vs. uniprot
Match: A0A067CYF5_SAPPC (Holocytochrome c-type synthase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CYF5_SAPPC)

HSP 1 Score: 200 bits (509), Expect = 8.390e-58
Identity = 102/202 (50.50%), Postives = 130/202 (64.36%), Query Frame = 2 
Query:  572 NALNNEFVYGQEKAPGQTIPLSTSRQQSSIPKGDFNPIHQPTDASTWVYPSEQQYYNAIKRKGYNASANDMPMTLAIHNAVNEQGWAMVTEWERLHGGGGVVAPAPKLLRFQGRPKDISPKAWIKTNLLGYTR-PFDRHDWVVKRADGSEARYVIDFYAGHMAAGSSAPVSMYLDVRPALDSVDAVVDRVRMFYGTSVRPHL 1174
            N LN      Q  A GQ++PLST R  S+IP G + P HQ     TW YPSEQQY+NA+KRKG++    DM + ++IHN +NE+GWA V E E+   G       PKL+RF GRPKD +PKA +  NL G    PFDRHDW++ R +G E RYVIDFY GH   G   P+S+Y+DVRPALD++   VDR+RM +  +V P L
Sbjct:   48 NTLNFMEPADQSVAKGQSVPLSTQRVASTIPMGSYVPAHQKEGQETWQYPSEQQYFNAMKRKGWDPQERDMKVIVSIHNTINEKGWAEVVEMEKTLHGDAYTRGDPKLVRFMGRPKDFTPKARL-LNLFGMANLPFDRHDWIIDR-NGEEVRYVIDFYTGHPTPGK--PISVYMDVRPALDNIGNAVDRLRMQFHKNVLPLL 245
[Close]
BLAST of mRNA_H-paniculata_contig4020.10414.1 vs. uniprot
Match: A0A024TNT9_9STRA (Holocytochrome c-type synthase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TNT9_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.470e-56
Identity = 113/244 (46.31%), Postives = 145/244 (59.43%), Query Frame = 2 
Query:  452 SACPIIGPTKMAQPESRKSGEACGCPVKTDSTASTETPAYNALNNEFVYGQEKAPGQTIPLSTSRQQSSIPKGDFNPIHQPTDASTWVYPSEQQYYNAIKRKGYNASANDMPMTLAIHNAVNEQGWAMVTEWER-LH--GGGGVVAPAPKLLRFQGRPKDISPKAWIKTNLLGYTRPFDRHDWVVKRADGSEARYVIDFYAGHMAAGSSAPVSMYLDVRPALDSVDAVVDRVRMFYGTSVRPHL 1174
            SACP+          + KSG   GCPV   +  + ++   N+LN            Q +PLST R  SSIP G F P HQ     TW YPSEQQY+NA+KRKG++    DM + ++IHN +NE+GWA V E+ER LH         P PKL+RF GRPKD SPKA     +     PFDRHDW+V R +G+E RYVIDFY GH   G   P+S+Y+DVRPALD+ +  VDR+RM +  ++ P L
Sbjct:    2 SACPVD------HASAAKSG---GCPVDHLNPDAAKS-GLNSLNFMEPADHTVDAKQKVPLSTHRVASSIPMGSFVPQHQTEGQQTWQYPSEQQYFNAMKRKGWDPEERDMKVIVSIHNTINEKGWADVVEFERTLHPEAYNSETCPEPKLVRFMGRPKDFSPKARFMNTIGVANLPFDRHDWIVDR-NGTEVRYVIDFYTGHPVPGK--PLSVYMDVRPALDNFENAVDRLRMQFHKTILPLL 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4020.10414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L219_9PHAE2.630e-9966.25Holocytochrome c-type synthase n=1 Tax=Ectocarpus ... [more]
D8LGP6_ECTSI6.200e-9760.61Holocytochrome c-type synthase n=1 Tax=Ectocarpus ... [more]
A0A835ZPE3_9STRA3.190e-6958.97Holocytochrome c-type synthase n=1 Tax=Tribonema m... [more]
W7TBT6_9STRA6.590e-6951.78Holocytochrome c-type synthase n=2 Tax=Monodopsida... [more]
A0A7S3HNG9_9STRA2.450e-6752.61Holocytochrome c-type synthase n=1 Tax=Spumella el... [more]
A0A7S1UN93_9STRA4.730e-6447.71Holocytochrome c-type synthase n=1 Tax=Grammatopho... [more]
A0A1V9Z395_9STRA1.020e-5948.43Holocytochrome c-type synthase n=1 Tax=Achlya hypo... [more]
W4G7Q4_9STRA1.230e-5849.32Holocytochrome c-type synthase n=4 Tax=Aphanomyces... [more]
A0A067CYF5_SAPPC8.390e-5850.50Holocytochrome c-type synthase n=2 Tax=Saprolegnia... [more]
A0A024TNT9_9STRA1.470e-5646.31Holocytochrome c-type synthase n=1 Tax=Aphanomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4020contigH-paniculata_contig4020:329..5833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score308.9
Seed ortholog evalue3.3e-81
Seed eggNOG ortholog2880.D8LGP6
Preferred nameHCCS
KEGG rclassRC00727,RC02130
KEGG koko:K01764
KEGG ReactionR02480
KEGG Pathwayko00860,map00860
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004408,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0006464,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0008150,GO:0008152,GO:0009653,GO:0009887,GO:0009987,GO:0016020,GO:0016043,GO:0016829,GO:0016846,GO:0017003,GO:0017004,GO:0017006,GO:0018063,GO:0019538,GO:0019866,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0034622,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0055114,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:1901564
EggNOG free text desc.holocytochrome-c synthase activity
EggNOG OGsKOG3996@1,KOG3996@2759
Ec32 ortholog descriptionCytochrome c/c1 haem-lyase
Ec32 orthologEc-10_003030.1
EC4.4.1.17
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons4
Model size1368
Cds size1155
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4020.10414.1prot_H-paniculata_contig4020.10414.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4020 474..5765 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930231.3144574-UTR-H-paniculata_contig4020:328..4731622930231.3144574-UTR-H-paniculata_contig4020:328..473Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4020 329..473 +
1691481201.7148144-UTR-H-paniculata_contig4020:328..4731691481201.7148144-UTR-H-paniculata_contig4020:328..473Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4020 329..473 +
1622930231.379111-UTR-H-paniculata_contig4020:5765..58331622930231.379111-UTR-H-paniculata_contig4020:5765..5833Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4020 5766..5833 +
1691481201.764863-UTR-H-paniculata_contig4020:5765..58331691481201.764863-UTR-H-paniculata_contig4020:5765..5833Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4020 5766..5833 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930231.3256779-CDS-H-paniculata_contig4020:473..10251622930231.3256779-CDS-H-paniculata_contig4020:473..1025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4020 474..1025 +
1691481201.7294652-CDS-H-paniculata_contig4020:473..10251691481201.7294652-CDS-H-paniculata_contig4020:473..1025Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4020 474..1025 +
1622930231.3371236-CDS-H-paniculata_contig4020:2968..32521622930231.3371236-CDS-H-paniculata_contig4020:2968..3252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4020 2969..3252 +
1691481201.7376425-CDS-H-paniculata_contig4020:2968..32521691481201.7376425-CDS-H-paniculata_contig4020:2968..3252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4020 2969..3252 +
1622930231.353193-CDS-H-paniculata_contig4020:4259..43981622930231.353193-CDS-H-paniculata_contig4020:4259..4398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4020 4260..4398 +
1691481201.748419-CDS-H-paniculata_contig4020:4259..43981691481201.748419-CDS-H-paniculata_contig4020:4259..4398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4020 4260..4398 +
1622930231.366526-CDS-H-paniculata_contig4020:5585..57651622930231.366526-CDS-H-paniculata_contig4020:5585..5765Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4020 5586..5765 +
1691481201.7561476-CDS-H-paniculata_contig4020:5585..57651691481201.7561476-CDS-H-paniculata_contig4020:5585..5765Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4020 5586..5765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4020.10414.1

>prot_H-paniculata_contig4020.10414.1 ID=prot_H-paniculata_contig4020.10414.1|Name=mRNA_H-paniculata_contig4020.10414.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=385bp
MEERGGACPVQHSGSEASPTAEGTQQTPHRRLSLRLDQQQQQQQQQHATT
AITNGGLWSGVASWIPFRGNKNDMATIPVGERRATESENAQRLRRQGSGS
NGSACPIIGPTKMAQPESRKSGEACGCPVKTDSTASTETPAYNALNNEFV
YGQEKAPGQTIPLSTSRQQSSIPKGDFNPIHQPTDASTWVYPSEQQYYNA
IKRKGYNASANDMPMTLAIHNAVNEQGWAMVTEWERLHGGGGVVAPAPKL
LRFQGRPKDISPKAWIKTNLLGYTRPFDRHDWVVKRADGSEARYVIDFYA
GHMAAGSSAPVSMYLDVRPALDSVDAVVDRVRMFYGTSVRPHLSGVLDTF
SSGTASDSTSSASTTSASREDAPPSAASGVSGGR*
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mRNA from alignment at H-paniculata_contig4020:329..5833+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4020.10414.1 ID=mRNA_H-paniculata_contig4020.10414.1|Name=mRNA_H-paniculata_contig4020.10414.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5505bp|location=Sequence derived from alignment at H-paniculata_contig4020:329..5833+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAAATATTATCCCACCGGTGTAGCGGCTTGAGATTCGGTTGACATCAG
CGACATCCATTAGCAGGTAGGCCAGCGGTACACCACCACTCCTGTCGTTC
AACACATTCCAAATTGTTTCGCCAGTTGTGACCCCACGCTATAGCATGGA
AGAACGAGGTGGTGCATGTCCAGTACAACATTCTGGTTCCGAGGCCTCTC
CGACAGCGGAAGGCACGCAGCAAACACCGCACCGTAGGTTAAGTCTCCGC
CTTGACCAGCAGCAGCAGCAGCAGCAGCAGCAGCACGCGACGACAGCAAT
AACCAATGGTGGCCTGTGGTCTGGTGTAGCTTCGTGGATTCCTTTCCGTG
GCAACAAGAATGACATGGCTACAATACCAGTAGGGGAGAGGCGTGCGACC
GAGTCAGAAAATGCGCAGCGTCTGCGTCGGCAAGGCAGTGGCAGCAACGG
CAGCGCGTGCCCAATAATAGGACCAACGAAGATGGCGCAGCCTGAATCCA
GGAAGTCTGGGGAGGCGTGTGGATGCCCCGTGAAGACAGATTCAACCGCT
TCGACAGAGACACCGGCTTATAATGCGCTGAACAACGAGTTTGTCTATGG
GCAAGAGAAGGCGCCTGGCCAGACGATTCCTTTGTCAACATCCAGACAGC
AATCGAGCATACCGAAGGGCGACTTCAATCCAATCCACCAGCCTACAGTG
AGTGTGTTGCCATCCTTCTTACGGCAATCGTCTGTGTAGAACGTGGCATG
TCATGATAAGTTCTGCGTAGGCAAGCATTGGAAGAAGATCCTTCTTTTTG
TGCGCTATACCATATACCAGGACATTCCAACCCTTGGAAACTAGTGGGAG
AATCACCGTTTAATGTTATATCTTGTGACATACACCTCTGTTGCACTCTT
CACGGTGTTTCAATTCTTGAACAAGAAATACAACGAGACTAAAAGTTGTG
GAAGCACACTGCAGCTCGATATGTATCTACATCAAGCACTGTTTGCGTTG
TCGACGCTCGCATGTGGCTTATCTAAAATTCTAAGGTTATCTCCCGAGCC
AACATCGCTTCCTCCTACTCCTCCAGCGAGGCAGCAGCGAACGATTAGAA
GCATGGGGAACGTCCCATGGCTAACCGTGGACAAAGATGCAACATATTTT
GAAATTCATCTATTTTTATTGTGCTGCACAACACCATGAATTCTCGTGAT
GATAGTGGGCTAACGGCAACACAATAAAAAAATGGAGAGAAGCTGGGAAG
CATCGACATCTCCCGAGAGTTCCCCAGCGAGGGATAGCCACAGCGTCTAT
ATGATGTCCTCTTATGCGTGATGGAACCAACAGACACAGCAGTAGGCAGC
CCGCCACAGTCGTCGCCCTCGGAATATAACAACGCAAGTGATGATCTGAT
CGTTAATTCGGCGTCGGGTTTCCTGAAAAAAGGCTGTTTCTTCTCTAAAC
TTTCCCCCCTAGGATTAAGGGGTTCATAAACCCTTTTAGCGCGTGATGCT
ATCTTGGAACCATAAAGGCACCTGACAGTCCCGCCGCCAATGACATGGAG
GGTCGTTTTTCACAAGAGGGGGTACAATGTGGGTCGCGAAATGCTAGCGT
ACGACAAGGAAATAGACGGAAAACGTGGGTTGTGGCAAATCGTGCACGTC
GGTTCACCCATCCGCTGATCAAAAAGATTTTGTTTCCATACATCGGTCGG
CTTGTTTCGGAGTAACAAGATCCCTTCAGAGATCCTGCGGGCGCTAAAAG
AGGATAGAAGAACGAGATTAGTAACACGTATCTTCCATGTCATGGTTGCG
GTTCCGTGAGGACATGGTTTTGTTCGGTTTATGACCTGGTGTGCGGGCTT
GTACTACGCACACACCCATGTAGAAGTCGGTCCCATATCGTCGTGGTATG
TCCTTACCTTCTCATCAAGTGCGGCAGTCACGATTCGCAAAGTCATGCCC
AGTCTTTGTGTATGTTGCCGTTTGTACTGTCTGCGGTTGTCGGAGCAGCG
CCGTGACAACGTAGTGTGTTTTGATTTCATGTCTTGGCGTGTGATTTTGT
GCGGCACACACACCTTGCGCAGTCAGTCACTCATCCTAAGGTTCGTTCCT
TGCGTTTCGGTCGAGTGTTGTGTTGCCGTGGAGCGCAAAACTGTTCCAAC
TCCCCAACACTAACTCTTAAGTATCTGTACAGGACTGTCTGTGCTGTCTG
TAGAGCTCTTTATCCTTGTGAGAATGTTGTAGACGTTGAGTCAGAAAAAC
TCGGAAGTCGTTTTCCCTGTTTTCCGAGGCAGGTTTACTCGAATAACTTG
ACAGGAACCGGCGGTAAAAGGGTCAAGTGTCGCCAGCGATGATCGACGGT
GCTGACGTTGTATCGTTTTTTACGGCACTGTGTTTTAGAGGTGGCGTTCC
GCGTACCAATCTAGCTCTGAGAACTCCGTTACTACATTTAGCAGACGATG
TACAGAAGGTCTACATGCAATAGTCAAGATTCGGCGCTCCCTCGCTACTG
GCGAGAATTTGTTTCATGAAGTGACCCCCACCGTGTCCCTTCCCCCTCCC
CTCCTCCCCTACAGCTGCTGCGTCGGTTAGCTATACTCTTAATACCCCCC
CTCCCCCGCGCAACCCGTGCTGGACATTGTCTACGTGCAGGACGCGTCGA
CATGGGTGTACCCTTCAGAGCAGCAGTACTACAACGCGATCAAGCGAAAA
GGCTACAACGCGTCGGCGAATGACATGCCCATGACCTTGGCGATTCATAA
CGCGGTGAACGAGCAGGGATGGGCCATGGTGACAGAATGGGAGCGGTTGC
ACGGCGGGGGGGGGGTTGTCGCGCCGGCACCGAAGCTATTGCGGTTCCAG
GGCCGACCGAAGGACATATCGCCCAAGGCCTGGATCAAGACTAACCTTCT
CGGCTACACGCGACCGTTCGACAGGTTTGGAACAGTTGAAAAACAAGATG
CCGTCGCGGGTGCGCGCCAAGTTCATATTAACGACAAGTTTGGGAGCTAT
GGAAATATGCTTGCAAACGATTGAAAGATTACGCTGTCCTGAGTTTGCGG
AAGCTGTGTTGCCTCGACGGTATTTCTGTTGTTTTCAGGTACTAATAGCT
AGTAGTAACGAGCCTCGTTTTCATGCCTATCTGCCCGTTGCCCGGTCGGG
TCGCACGCGATATACTTGCAAGGGGGCTATTATGCAGGTTGTTGGATCTC
GGATTCTGGTGATGAACGCCGTTTGACCGGCAAGGTGTTGAACTCTGCGG
TCTCGAAGCCTCGAAAACCAAACCGAGTATCATCAAGATCAGGTCCTCTG
ACAAACGGAAATCGGGGAGATATGGTCTGAAGGCAGCTCCAGTCCCCTCT
TGAGGTCGTGTTTACCCCTTATTGTTTTTTTTTTGCTGCTGAATGTACAC
AACGGAACTTTGATGTCAGCTGAATAGCCTCAACATGTGTACGCTAAAGT
TATGATATGGGCGTTGACGTTTAATTCTACGAATTGTGGCAAGCGGGTTG
GCTTATGAACGAGAATCCTGGTGGGTGAAAGGTTGACCTTATTTTAGGAT
TGGTTCTCATTCGTAGATGTGAAAACTATTCCATGTTTACGTATACTACA
CACGCGAGTGATACAGTAATATTCCCTTGTAAAGATTGTCGTAGCTCATG
TCGTGCCTGGTCGAAGAGGTGCGACCCGACTTCCCTCCCTCGTTCCCCAA
CCTCCACGCTCACGCCTCGTCCCGACTTAATCTCTCTCTCCCATTTCGTC
CTTCTGTATTCCGAGAGCGCAATCGCCTCTACGAACACCGTACATGGTCC
CCGGCGACTGAATATATATTTGTAAATATACATGTAGGTGCCCCGCACTC
ACGATGCACGCTCTCGAACACCACGATCCGTATCGATCATGTTGGTGCAT
TATTTTTGCCCCGAAATTGGGCGTTTTTTAGGCACGACTGGGTGGTGAAG
CGAGCGGACGGGAGCGAGGCGCGGTACGTCATCGACTTTTACGCGGGACA
CATGGCCGCCGGGTCTAGCGCTCCCGTCTCCATGTACCTGGATGTACGGC
CGGCTCTAGATTCTGTTGATGTGAGTAGCGCTTTTTCATAGAAATAGTCA
TTAAGTAACACGTCCAGTAAACGTCTAGTATGTACAATGTAGAAGTCGGG
ACCAACTCTAGATTCTGCTGATGTGTGTGTGTGTGTGTTGGCGCCCATTG
TTCAAATAAACCACAGAAAATAAGACCATTAAGCTGTTCAGTTAATCGTG
TGATGTTTGTATATGCAACATACATGAATCGACTTGCAAGCTTGTCAGCT
GTTCGAACCGGTTTTTTTTTTCAGGTTCCGAATCTGTCGTGCGTGTTTTA
CCCCTGGTGCAATGTGAGTTCCAAATGACGTGTTGATGAAATAACCCGAA
CAATACCGCTCGGTTGGCGCTTCTGAATAGATTCATCAAAGCTATTACAA
TAACTTTACCTGCCCGACTAGGGCCTGCCGGGTTTTTCGCTAGTTCTCGG
AATTATTGGTTAGGCTTGACTCTTGCTCTTGTTTTGAAGGGAGGCAACGG
GCACGTAAATTACCCAATGGTGACCCATGGAGGTAATGAGAAGAAAATAT
ATGTTGGGCTTCTATGGGAGTTGGAATGAAAGCAGTGTTCGTCCGTTGTC
GAGGACCGATTAGAGGGCACCCGTTGAGAAGCTCGTGGTTGAATTCGAGG
CGCAGTCGTTGATGATTGCGATTCAGCTAACTTTAGCACTGCAGCGAGTG
TCCTTTGTCCTCGTTCTCGTTTCGCTATTTGTCCTCGAGAGTCCATTCAC
GCTTTGAGTCCTTACAACGCTCTCCATCATACGTTTAGACGGTGGTCCAG
ACTCGAGAAGTGCCTCAAAATACACTCAAAACTGTATATATTTCTTCATC
TCCGGAAAGGAAGGGTGCAGCAAGGCGAAAGTGGCGAGAATGGCGAGAAT
GGCTAAGTTGGAGTTTGGGAGTTCCAACAAGGGGACAACTACCATATCCT
CTACACATATGTTCGACCAATTTCCTACCAAGTCCAGTTCTTTTGATCCA
AAACTCGGCGATTTTTGCACCGTCGAAGTCTAATCCGGCAACAAGAAAAC
ATAAGAGTGACAAAGGCCACGATGAGTAGCGGTTTCGATATTAAGGATAA
ACCTCATTTGCAAACCAACCAACCAACCAACCAATCAATCAATCAATCAA
CCTCCATGCTTGTTTTTCTACGACTGTTTCCCTTTTATCACGCGTCGTTC
ACTGCAGGCCGTGGTAGACCGTGTGCGTATGTTCTATGGGACGAGTGTGC
GGCCTCACCTCAGCGGGGTGTTGGATACCTTTTCAAGCGGAACGGCTTCC
GATTCGACGAGCTCGGCTAGTACTACCAGTGCGTCTAGGGAAGACGCCCC
GCCGTCGGCAGCAAGTGGGGTCAGCGGCGGGCGGTGACACGTAATGAGGT
GGAACTGTGCGACGTTCCTTTTCTGTTGGGAACAGACAGGCGGGAGAGGG
GGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4020:329..5833+

>mRNA_H-paniculata_contig4020.10414.1 ID=mRNA_H-paniculata_contig4020.10414.1|Name=mRNA_H-paniculata_contig4020.10414.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2310bp|location=Sequence derived from alignment at H-paniculata_contig4020:329..5833+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGAACGAGGTGGTGCATGTCCAGTACAACATTCTGGTTCCGAGGC
CTCTCCGACAGCGGAAGGCACGCAGCAAACACCGCACCGTAGGTTAAGTC
TCCGCCTTGACCAGCAGCAGCAGCAGCAGCAGCAGCAGCACGCGACGACA
GCAATAACCAATGGTGGCCTGTGGTCTGGTGTAGCTTCGTGGATTCCTTT
CCGTGGCAACAAGAATGACATGGCTACAATACCAGTAGGGGAGAGGCGTG
CGACCGAGTCAGAAAATGCGCAGCGTCTGCGTCGGCAAGGCAGTGGCAGC
AACGGCAGCGCGTGCCCAATAATAGGACCAACGAAGATGGCGCAGCCTGA
ATCCAGGAAGTCTGGGGAGGCGTGTGGATGCCCCGTGAAGACAGATTCAA
CCGCTTCGACAGAGACACCGGCTTATAATGCGCTGAACAACGAGTTTGTC
TATGGGCAAGAGAAGGCGCCTGGCCAGACGATTCCTTTGTCAACATCCAG
ACAGCAATCGAGCATACCGAAGGGCGACTTCAATCCAATCCACCAGCCTA
CAATGGAAGAACGAGGTGGTGCATGTCCAGTACAACATTCTGGTTCCGAG
GCCTCTCCGACAGCGGAAGGCACGCAGCAAACACCGCACCGTAGGTTAAG
TCTCCGCCTTGACCAGCAGCAGCAGCAGCAGCAGCAGCAGCACGCGACGA
CAGCAATAACCAATGGTGGCCTGTGGTCTGGTGTAGCTTCGTGGATTCCT
TTCCGTGGCAACAAGAATGACATGGCTACAATACCAGTAGGGGAGAGGCG
TGCGACCGAGTCAGAAAATGCGCAGCGTCTGCGTCGGCAAGGCAGTGGCA
GCAACGGCAGCGCGTGCCCAATAATAGGACCAACGAAGATGGCGCAGCCT
GAATCCAGGAAGTCTGGGGAGGCGTGTGGATGCCCCGTGAAGACAGATTC
AACCGCTTCGACAGAGACACCGGCTTATAATGCGCTGAACAACGAGTTTG
TCTATGGGCAAGAGAAGGCGCCTGGCCAGACGATTCCTTTGTCAACATCC
AGACAGCAATCGAGCATACCGAAGGGCGACTTCAATCCAATCCACCAGCC
TACAGACGCGTCGACATGGGTGTACCCTTCAGAGCAGCAGTACTACAACG
CGATCAAGCGAAAAGGCTACAACGCGTCGGCGAATGACATGCCCATGACC
TTGGCGATTCATAACGCGGTGAACGAGCAGGGATGGGCCATGGTGACAGA
ATGGGAGCGGTTGCACGGCGGGGGGGGGGTTGTCGCGCCGGCACCGAAGC
TATTGCGGTTCCAGGGCCGACCGAAGGACATATCGCCCAAGGCCTGGATC
AAGACTAACCTTCTCGGCTACACGCGACCGTTCGACAGGACGCGTCGACA
TGGGTGTACCCTTCAGAGCAGCAGTACTACAACGCGATCAAGCGAAAAGG
CTACAACGCGTCGGCGAATGACATGCCCATGACCTTGGCGATTCATAACG
CGGTGAACGAGCAGGGATGGGCCATGGTGACAGAATGGGAGCGGTTGCAC
GGCGGGGGGGGGGTTGTCGCGCCGGCACCGAAGCTATTGCGGTTCCAGGG
CCGACCGAAGGACATATCGCCCAAGGCCTGGATCAAGACTAACCTTCTCG
GCTACACGCGACCGTTCGACAGGCACGACTGGGTGGTGAAGCGAGCGGAC
GGGAGCGAGGCGCGGTACGTCATCGACTTTTACGCGGGACACATGGCCGC
CGGGTCTAGCGCTCCCGTCTCCATGTACCTGGATGTACGGCCGGCTCTAG
ATTCTGTTGATGCACGACTGGGTGGTGAAGCGAGCGGACGGGAGCGAGGC
GCGGTACGTCATCGACTTTTACGCGGGACACATGGCCGCCGGGTCTAGCG
CTCCCGTCTCCATGTACCTGGATGTACGGCCGGCTCTAGATTCTGTTGAT
GCCGTGGTAGACCGTGTGCGTATGTTCTATGGGACGAGTGTGCGGCCTCA
CCTCAGCGGGGTGTTGGATACCTTTTCAAGCGGAACGGCTTCCGATTCGA
CGAGCTCGGCTAGTACTACCAGTGCGTCTAGGGAAGACGCCCCGCCGTCG
GCAGCAAGTGGGGTCAGCGGCGGGCGGTGAGCCGTGGTAGACCGTGTGCG
TATGTTCTATGGGACGAGTGTGCGGCCTCACCTCAGCGGGGTGTTGGATA
CCTTTTCAAGCGGAACGGCTTCCGATTCGACGAGCTCGGCTAGTACTACC
AGTGCGTCTAGGGAAGACGCCCCGCCGTCGGCAGCAAGTGGGGTCAGCGG
CGGGCGGTGA
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