mRNA_H-paniculata_contig402.10412.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig402.10412.1
Unique NamemRNA_H-paniculata_contig402.10412.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig402.10412.1 vs. uniprot
Match: D8LBT2_ECTSI (DJ-1_PfpI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBT2_ECTSI)

HSP 1 Score: 342 bits (876), Expect = 5.220e-110
Identity = 170/226 (75.22%), Postives = 193/226 (85.40%), Query Frame = 2 
Query:  176 MTKILLVLTSAAKMGEKETGYWLEEAAAPYCIFIDAGHEVDIASPAGGLPPVDKGSLADAYLTDHTRRFSADAAAQAKLSSSIKLSDVDASAYGAIFCSGGHGTCVDFGNNPDVQGVLEKVYANGGVVSAVCHGPTCFVGAKSPDGTALVSGKKMTGFTDAEEEQAGLTAVVPYLLESKLKELGAEFSSGAPWSPFAVVDGRVVTGQNPQSSELAAKKVTEVISST 853
            M KILLVLTS+  MGEKETG+WLEEAAAP+ IF DAG+EVDIASP GG PPVD GS ADAYLTD+TRRF ADAAAQAKL+++ KLSDVD+SAY A+F +GGHGTCVDF NNP VQGV+EKVY  GGV+SAVCHGPT FVGAK+ DG ALVSGKKMTGFTD EE Q GLT  VP+LLE+KL ELGA+FS   PW+P+AVVDGRVVTGQNP SSEL A+KV EV+ ++
Sbjct:    1 MPKILLVLTSSKMMGEKETGFWLEEAAAPHAIFTDAGYEVDIASPEGGAPPVDAGSKADAYLTDYTRRFDADAAAQAKLAATTKLSDVDSSAYAAVFFAGGHGTCVDFPNNPSVQGVMEKVYGAGGVISAVCHGPTAFVGAKTADGAALVSGKKMTGFTDTEEAQVGLTDKVPFLLEAKLIELGADFSKADPWTPYAVVDGRVVTGQNPMSSELTAQKVVEVLKAS 226
[Close]
BLAST of mRNA_H-paniculata_contig402.10412.1 vs. uniprot
Match: A0A7S4C940_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C940_9EUGL)

HSP 1 Score: 226 bits (575), Expect = 8.690e-66
Identity = 111/210 (52.86%), Postives = 147/210 (70.00%), Query Frame = 2 
Query:  215 MGEKETGYWLEEAAAPYCIFIDAGHEVDIASPAGGLPPVDKGSLADAYLTDHTRRFSADAAAQAKLSSSIKLSDVDASAYGAIFCSGGHGTCVDFGNNPDVQGVLEKVYANGGVVSAVCHGPTCFVGAKSPDGTALVSGKKMTGFTDAEEEQAGLTAVVPYLLESKLKELGAEFSSGAPWSPFAVVDGRVVTGQNPQSSELAAKKVTEVI 844
            MG+ ETG WLEE A PY ++  AGH VDI S +GG  P+DKGS ++A+ T+  ++F ADA A  KL +S+KL DV  + Y A+  SGGHGTCVDF NN  +   ++ VYA G +V+AVCHGPT  +G K PDG+ LV G  +TGFTD+EE   GLT+ VP LLES++K LG +F +GA W+    VDG++VTGQNPQSS   A+ V +++
Sbjct:    1 MGDHETGSWLEETAGPYNVYTGAGHHVDIVSISGGEIPIDKGSRSEAFYTEECKKFEADATATQKLKNSLKLGDVQLTDYDAVHLSGGHGTCVDFYNNTALYSAVDAVYAAGKIVAAVCHGPTGILGCKKPDGSPLVQGLTVTGFTDSEEAAVGLTSKVPVLLESEMKRLGGKFIAGADWTSNVQVDGKLVTGQNPQSSVALAEAVVKLL 210
[Close]
BLAST of mRNA_H-paniculata_contig402.10412.1 vs. uniprot
Match: A0A2G1MGR6_9RHOB (Type 1 glutamine amidotransferase domain-containing protein n=1 Tax=Limimaricola cinnabarinus TaxID=1125964 RepID=A0A2G1MGR6_9RHOB)

HSP 1 Score: 226 bits (575), Expect = 1.460e-65
Identity = 115/225 (51.11%), Postives = 154/225 (68.44%), Query Frame = 2 
Query:  176 MTKILLVLTSAAKMGE--KETGYWLEEAAAPYCIFIDAGHEVDIASPAGGLPPVDKGSLADAYLTDHTRRFSADAAAQAKLSSSIKLSDVDASAYGAIFCSGGHGTCVDFGNNPDVQGVLEKVYANGGVVSAVCHGPTCFVGAKSPDGTALVSGKKMTGFTDAEEEQAGLTAVVPYLLESKLKELGAEFSSGAPWSPFAVVDGRVVTGQNPQSSELAAKKVTEVI 844
            MTKIL++LTS  ++G+  ++TG+WLEE AAPY +F DAG EV +ASP GG PP+D  S A+ + TD TRRF  D AAQ +L+S+ +L ++  + Y A+F  GGHG   D   NPD + ++E     G  + AVCH P  F   ++ DG  LV G+K+TGFT+ EEE  GLT VVP+LLE  LKE GAE+  G  W+PF V DG++VTGQNP SSE AAKK+ +++
Sbjct:    1 MTKILMILTSHDRLGDTGEKTGFWLEEFAAPYYVFKDAGVEVTLASPQGGQPPLDPKSDAEDFQTDATRRFKEDKAAQEQLASTERLDEIYPTQYDAVFYPGGHGPMWDLAENPDSRRIIETFVTEGRPLGAVCHAPAVFRHTQTEDGKPLVEGRKLTGFTNGEEEGVGLTDVVPFLLEDMLKEKGAEYQKGEDWAPFVVTDGKLVTGQNPASSEEAAKKLLDLV 225
[Close]
BLAST of mRNA_H-paniculata_contig402.10412.1 vs. uniprot
Match: A0A4P7XI57_9ALTE (Type 1 glutamine amidotransferase domain-containing protein n=2 Tax=Alteromonadaceae TaxID=72275 RepID=A0A4P7XI57_9ALTE)

HSP 1 Score: 223 bits (569), Expect = 1.230e-64
Identity = 120/223 (53.81%), Postives = 152/223 (68.16%), Query Frame = 2 
Query:  182 KILLVLTSAAKMGE--KETGYWLEEAAAPYCIFIDAGHEVDIASPAGGLPPVDKGSLADAYLTDHTRRFSADAAAQAKLSSSIKLSDVDASAYGAIFCSGGHGTCVDFGNNPDVQGVLEKVYANGGVVSAVCHGPTCFVGAKSPDGTALVSGKKMTGFTDAEEEQAGLTAVVPYLLESKLKELGAEFSSGAPWSPFAVVDGRVVTGQNPQSSELAAKKVTEVI 844
            K+L+VLTS A++G+   +TG+WLEE  APY  F DAG EV +ASP GG PPVD  S AD  LTD TRRFS DAAA++ +SS+ KL+DV   A+ A+F  GGHG   D   N DV  +LE    +G VV AVCHGP  F  A++P G   V+ +K+TGF+++EEE A LT VVP+L+E  LK  GA +S G  WSP  VVDG ++TGQNP SSE AAK V + +
Sbjct:    2 KVLMVLTSHAQLGDTGNKTGFWLEEFTAPYYAFRDAGAEVTLASPKGGQPPVDPNSEADEALTDSTRRFSKDAAAKSAMSSTKKLADVTMDAFDAVFFPGGHGPLWDLVENTDVLRLLEAAGRDGKVVGAVCHGPAVFRDAETPSGDYFVNRRKVTGFSNSEEESAQLTQVVPFLVEDMLKSCGAAYSCGPDWSPHIVVDGNLITGQNPSSSEGAAKAVLQAL 224
[Close]
BLAST of mRNA_H-paniculata_contig402.10412.1 vs. uniprot
Match: A0A7S3QHL9_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QHL9_9STRA)

HSP 1 Score: 222 bits (565), Expect = 1.940e-63
Identity = 110/217 (50.69%), Postives = 146/217 (67.28%), Query Frame = 2 
Query:  185 ILLVLTSAAKMGEKETGYWLEEAAAPYCIFIDAGHEVDIASPAGGLPPVDKGSLADAYLTDHTRRFSADAAAQAKLSSSIKLSDVDASAYGAIFCSGGHGTCVDFGNNPDVQGVLEKVY-ANGGVVSAVCHGPTCFVGAKSPDGTALVSGKKMTGFTDAEEEQAGLTAVVPYLLESKLKELGAEFSSGAPWSPFAVVDGRVVTGQNPQSSELAAKKV 832
            ++LV TSA  +    TG WLEE AAPY  F+DAG+E+ +ASPAGG  P+D  SL + + TD  ++F  DA A  KLS S  +  VD     A+F +GGHGTC DF N+PD++  +E V+ ++G +V++VCHGP CF     PDGT LVSG K+TGF++ EEE  GL + VP+LLESKLKELG  +  G  W+   V+DG ++TGQNPQSS   AK +
Sbjct:   53 VVLVATSAGSLKSHSTGLWLEELAAPYYQFLDAGYEIIVASPAGGPIPIDAASLGEGFFTDDAKKFMHDATAVGKLSHSEPIGSVDLKDVDALFMAGGHGTCTDFINSPDLKKAIETVFNSDGKIVASVCHGPMCFTDCVKPDGTPLVSGLKVTGFSNTEEEAVGLQSTVPFLLESKLKELGGLYERGDDWNSKVVIDGELITGQNPQSSTECAKAI 269
[Close]
BLAST of mRNA_H-paniculata_contig402.10412.1 vs. uniprot
Match: A0A6U0IZP5_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IZP5_9STRA)

HSP 1 Score: 219 bits (557), Expect = 5.740e-63
Identity = 118/227 (51.98%), Postives = 150/227 (66.08%), Query Frame = 2 
Query:  176 MTKILLVLTSAAKMGEKETGYWLEEAAAPYCIFIDAGHEVDIASPAGGLPPVDKGSLADAYLTDHTRRFSADAAAQAKLSSSIKLSDVDASAYGAIFCSGGHGTCVDFGNNPDVQGVLEKVYANGGVVSAVCHGPTCFVGAKSPDGT--ALVSGKKMTGFTDAEEEQAGLTAVVPYLLESKLKELGAEFSSGAPWSPFAVVDGRVVTGQNPQSSELAAKKVTEVISS 850
            M KI++V TSA ++   +TG WLEE AAPY  F DAG+E++IASPAGG  P+D GSL +A+LTD  ++F  D  A   LS + KLS  D SA  AIF  GGHGTCVDF ++  V+G +E +Y  G VV+AVCHGPTC      P GT   LV    +TGFTD EEE   LT  VP+LLE KLKE G +F     W+P   VDG+++TGQNPQSSE  A+   +++S+
Sbjct:    1 MPKIIIVSTSAPELAGHKTGLWLEECAAPYYKFKDAGYEIEIASPAGGPVPLDAGSLGEAFLTDACKKFLFDPEAMGMLSHTTKLSAADLSAADAIFFCGGHGTCVDFIDDASVKGAIETLYGAGKVVAAVCHGPTCLPQCTKP-GTDEPLVKDLVVTGFTDTEEEAVQLTGKVPFLLEQKLKEQGGKFERADDWNPKVCVDGKLITGQNPQSSEACAEATIKMLSA 226
[Close]
BLAST of mRNA_H-paniculata_contig402.10412.1 vs. uniprot
Match: A0A1Z5JTZ3_FISSO (DJ-1_PfpI domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JTZ3_FISSO)

HSP 1 Score: 216 bits (549), Expect = 7.970e-62
Identity = 108/225 (48.00%), Postives = 149/225 (66.22%), Query Frame = 2 
Query:  176 MTKILLVLTSAAKMGEKETGYWLEEAAAPYCIFIDAGHEVDIASPAGGLPPVDKGSLADAYLTDHTRRFSADAAAQAKLSSSIKLSDVDASAYGAIFCSGGHGTCVDFGNNPDVQGVLEKVYANGGVVSAVCHGPTCFVGAKSPDGTALVSGKKMTGFTDAEEEQAGLTAVVPYLLESKLKELGAEFSSGAPWSPFAVVDGRVVTGQNPQSSELAAKKVTEVISS 850
            M K++LV TSA+++    TG WLEE A PY  F++ G+EV +ASPAGG  P+D+ SL + + TD +++F  DAAA   LS + KL D+D  +  AI+ +GGHGTCVDF +NP ++  +E VYA G VV+A CHGP        PDGT LV  K +TGF D+EE    L  +VP+LLE++ KELGA++     W   A  DG +VTGQNPQSS+  A+ V +++S+
Sbjct:    1 MVKVVLVCTSASELKGHPTGLWLEECATPYYAFLEQGYEVILASPAGGAVPIDQNSLEEGFFTDASKKFMHDAAAVGALSHTKKLDDIDWQSVDAIYLAGGHGTCVDFIDNPVLKHAIETVYAAGKVVAADCHGPIGLAQCHKPDGTPLVQDKVVTGFADSEELAVQLQGIVPFLLETRFKELGAKYEKAEDWQSKACADGNLVTGQNPQSSDACAEAVIQILSA 225
[Close]
BLAST of mRNA_H-paniculata_contig402.10412.1 vs. uniprot
Match: A0A7S4I150_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I150_9STRA)

HSP 1 Score: 216 bits (549), Expect = 8.500e-62
Identity = 116/226 (51.33%), Postives = 146/226 (64.60%), Query Frame = 2 
Query:  176 MTKILLVLTSAAKMGEKETGYWLEEAAAPYCIFIDAGHEVDIASPAGGLPPVDKGSLADAYLTDHTRRFSADAAAQAKLSSSIKLSDVDASAYGAIFCSGGHGTCVDFGNNPDVQGVLEKVYANGGVVSAVCHGPTCFVGAKSPDGT-ALVSGKKMTGFTDAEEEQAGLTAVVPYLLESKLKELGAEFSSGAPWSPFAVVDGRVVTGQNPQSSELAAKKVTEVISS 850
            MTK ++V TSA ++   +TG WLEE AAPY  F +AG+E+DIASPAGG  P+D GSL + +LTD  ++F  D  A   LS + KLSDVD SA  AIF  GGHGTCVDF ++  V+G +E +Y    VV+AVCHGP C      P  T  LV G  +TGFTD EE    L + VP+LLE KLKE G  F     W+    +DG++VTGQNPQSSE  A+ V ++I S
Sbjct:    1 MTKAIIVSTSAPELAGHKTGLWLEECAAPYYKFKEAGYEIDIASPAGGPVPLDSGSLQEMFLTDACKKFLFDPEAMGMLSHTSKLSDVDLSAADAIFFCGGHGTCVDFIDDASVKGAIETLYGADKVVAAVCHGPNCLPQCVKPGSTDPLVKGLTVTGFTDTEESAVQLASKVPFLLEQKLKEQGCIFERADDWNSKVCIDGKLVTGQNPQSSEACAEAVIKIILS 226
[Close]
BLAST of mRNA_H-paniculata_contig402.10412.1 vs. uniprot
Match: A0A830H344_9CHLO (DJ-1_PfpI domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H344_9CHLO)

HSP 1 Score: 214 bits (546), Expect = 2.790e-61
Identity = 115/229 (50.22%), Postives = 152/229 (66.38%), Query Frame = 2 
Query:  182 KILLVLTSAAKMG---EKETGYWLEEAAAPYCIFIDAGHEVDIASPAGGLPPVDKGSLADAYLTDHTRRFSADAAAQAKLSSSIKLSDVDASAYGAIFCSGGHGTCVDFGNNPDVQGVLEKVYANGGVVSAVCHGPTCFVGAKSPDGTALVSGKKMTGFTDAEEEQAGLTAV----VPYLLESKLKELGAEFSSGAPWSPFAVVDGRVVTGQNPQSSELAAKKVTEVIS 847
            K+LLV TSA+K G   +K++G W EE A PY +F DAG  V IASP GG  P+D GS ADA++TD+TR+F ADA A A L+SS KLSDVDA+ + A++ +GGH T  DF +N ++  ++E +Y  G VV+A CHGP   V  K  DGT LVSG  +TGF D EE+  GL  V    +P+ L+ K  ELG  F +GA WS  AV  G+++TGQNPQSSE  A+ +   ++
Sbjct:    5 KVLLVCTSASKWGKDQDKDSGAWYEEVACPYYVFKDAGLSVVIASPLGGPIPIDAGSKADAFMTDYTRKFDADADALAVLNSSTKLSDVDAATFDAVYLAGGHATYTDFPDNKELIAIVETLYNAGKVVAADCHGPVGLVNCKKADGTPLVSGLNVTGFLDTEEQAVGLDPVKCDVLPFSLQQKFTELGGNFQAGADWSSNAVSAGKLITGQNPQSSEQVAQAMLTALA 233
[Close]
BLAST of mRNA_H-paniculata_contig402.10412.1 vs. uniprot
Match: K0SU60_THAOC (DJ-1_PfpI domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SU60_THAOC)

HSP 1 Score: 214 bits (545), Expect = 2.830e-61
Identity = 106/223 (47.53%), Postives = 147/223 (65.92%), Query Frame = 2 
Query:  176 MTKILLVLTSAAKMGEKETGYWLEEAAAPYCIFIDAGHEVDIASPAGGLPPVDKGSLADAYLTDHTRRFSADAAAQAKLSSSIKLSDVDASAYGAIFCSGGHGTCVDFGNNPDVQGVLEKVYANGGVVSAVCHGPTCFVGAKSPDGTALVSGKKMTGFTDAEEEQAGLTAVVPYLLESKLKELGAEFSSGAPWSPFAVVDGRVVTGQNPQSSELAAKKVTEVI 844
            M K+++V TSA  +G   TG W+EE A PY IF +AGHEV +ASPAGG  P+D  S++D + T+  ++F  D  A  +LS S+KL  +D S   AIF  GGHG C D  + P ++  +E +YA+  VV+AVCHGP        PDG+ LV+GK +TGFT++EE+   L   VP++LE+KLKE G+++ S A W+    VDG++VTGQNPQSSE  AK V  ++
Sbjct:    1 MPKVVIVSTSADDLGGHPTGLWIEELATPYYIFKEAGHEVVVASPAGGAVPIDASSMSDGFFTEEAKKFMHDGEAFGQLSHSVKLDSIDVSTVDAIFLCGGHGVCTDVVDCPSLKSAIETLYASDKVVAAVCHGPMGLPQCNKPDGSPLVAGKVVTGFTNSEEKAVQLETKVPFMLETKLKEQGSKYESAADWNSKVCVDGKLVTGQNPQSSEECAKAVVALL 223
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig402.10412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBT2_ECTSI5.220e-11075.22DJ-1_PfpI domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S4C940_9EUGL8.690e-6652.86Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A2G1MGR6_9RHOB1.460e-6551.11Type 1 glutamine amidotransferase domain-containin... [more]
A0A4P7XI57_9ALTE1.230e-6453.81Type 1 glutamine amidotransferase domain-containin... [more]
A0A7S3QHL9_9STRA1.940e-6350.69Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A6U0IZP5_9STRA5.740e-6351.98Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A1Z5JTZ3_FISSO7.970e-6248.00DJ-1_PfpI domain-containing protein n=2 Tax=Fistul... [more]
A0A7S4I150_9STRA8.500e-6251.33Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A830H344_9CHLO2.790e-6150.22DJ-1_PfpI domain-containing protein n=1 Tax=Pycnoc... [more]
K0SU60_THAOC2.830e-6147.53DJ-1_PfpI domain-containing protein n=2 Tax=Thalas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig402contigH-paniculata_contig402:22378..29718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score341.3
Seed ortholog evalue3.5e-91
Seed eggNOG ortholog2880.D8LBT2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.glyoxalase III activity
EggNOG OGs2RZ3Y@2759,COG0693@1
Ec32 ortholog descriptionThiJ/PfpI
Ec32 orthologEc-27_002800.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size2166
Cds size681
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig402.10412.1prot_H-paniculata_contig402.10412.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig402 23688..28962 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930230.9877498-UTR-H-paniculata_contig402:22377..236871622930230.9877498-UTR-H-paniculata_contig402:22377..23687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig402 22378..23687 -
1691481201.524204-UTR-H-paniculata_contig402:22377..236871691481201.524204-UTR-H-paniculata_contig402:22377..23687Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig402 22378..23687 -
1622930231.0844595-UTR-H-paniculata_contig402:28962..290031622930231.0844595-UTR-H-paniculata_contig402:28962..29003Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig402 28963..29003 -
1691481201.574729-UTR-H-paniculata_contig402:28962..290031691481201.574729-UTR-H-paniculata_contig402:28962..29003Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig402 28963..29003 -
1622930231.1032848-UTR-H-paniculata_contig402:29584..297181622930231.1032848-UTR-H-paniculata_contig402:29584..29718Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig402 29585..29718 -
1691481201.5871336-UTR-H-paniculata_contig402:29584..297181691481201.5871336-UTR-H-paniculata_contig402:29584..29718Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig402 29585..29718 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930231.0044167-CDS-H-paniculata_contig402:23687..238731622930231.0044167-CDS-H-paniculata_contig402:23687..23873Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig402 23688..23873 -
1691481201.5336664-CDS-H-paniculata_contig402:23687..238731691481201.5336664-CDS-H-paniculata_contig402:23687..23873Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig402 23688..23873 -
1622930231.0189235-CDS-H-paniculata_contig402:24298..244331622930231.0189235-CDS-H-paniculata_contig402:24298..24433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig402 24299..24433 -
1691481201.5412853-CDS-H-paniculata_contig402:24298..244331691481201.5412853-CDS-H-paniculata_contig402:24298..24433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig402 24299..24433 -
1622930231.0342376-CDS-H-paniculata_contig402:24787..249761622930231.0342376-CDS-H-paniculata_contig402:24787..24976Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig402 24788..24976 -
1691481201.5484817-CDS-H-paniculata_contig402:24787..249761691481201.5484817-CDS-H-paniculata_contig402:24787..24976Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig402 24788..24976 -
1622930231.0533864-CDS-H-paniculata_contig402:25539..256521622930231.0533864-CDS-H-paniculata_contig402:25539..25652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig402 25540..25652 -
1691481201.5562599-CDS-H-paniculata_contig402:25539..256521691481201.5562599-CDS-H-paniculata_contig402:25539..25652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig402 25540..25652 -
1622930231.0671475-CDS-H-paniculata_contig402:28904..289621622930231.0671475-CDS-H-paniculata_contig402:28904..28962Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig402 28905..28962 -
1691481201.5665667-CDS-H-paniculata_contig402:28904..289621691481201.5665667-CDS-H-paniculata_contig402:28904..28962Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig402 28905..28962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig402.10412.1

>prot_H-paniculata_contig402.10412.1 ID=prot_H-paniculata_contig402.10412.1|Name=mRNA_H-paniculata_contig402.10412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp
MTKILLVLTSAAKMGEKETGYWLEEAAAPYCIFIDAGHEVDIASPAGGLP
PVDKGSLADAYLTDHTRRFSADAAAQAKLSSSIKLSDVDASAYGAIFCSG
GHGTCVDFGNNPDVQGVLEKVYANGGVVSAVCHGPTCFVGAKSPDGTALV
SGKKMTGFTDAEEEQAGLTAVVPYLLESKLKELGAEFSSGAPWSPFAVVD
GRVVTGQNPQSSELAAKKVTEVISST*
back to top

mRNA from alignment at H-paniculata_contig402:22378..29718-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig402.10412.1 ID=mRNA_H-paniculata_contig402.10412.1|Name=mRNA_H-paniculata_contig402.10412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7341bp|location=Sequence derived from alignment at H-paniculata_contig402:22378..29718- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATTTTGTGCCCACAATTCGCTGATTGATCAAGCCATTTTGAAAGGAAG
CATTCTGCTTGACCGAAAAACATGGTTGTCAACCGTGCGGGATTGTCACT
TTCTCTTGACAGCAGGCATGGTTCCACCTGAAATGTGAGCGACCTTACTC
TTCATGGACTGATGGTGTGGAGTACACAAGCTCATACGACTCTCAGTACG
GATCTCAAGACATGTGTAAGACAAGCAAAGAATGAAGGGAGTGCGATTAA
GTGCGGATCTGTCTTGCTTAGTGATCACTGTACTGTGCTGTTTGTCTGCT
GCACTTTCCACTGTCGACCAAAACTAGTTTTATGAGAAACTTCTTCATGG
CTCACCATTCTCGTTGAACAGCTTGCGGCACTTTCGGGTACCCTATCGAG
CCTAAAACATAAACAATATTCCCAAATACTACCATGGTTGAAAATTTGGT
TGGAGATTAAAAAAAATGTCAACATACATCACGAGGGCGGGTGTTGACAA
CCTAGAGGGCGGGTGTTGCAGGATCAACGAAACCCGGGACGAAACGGCGA
GCCCCCCTCTTGCATTCCCACTCCTACCGCCACCCTACCACTCCCACTCG
CACGACAGCCCACTACTACTACCACCCGCAAACTGTAGCCTGTTATCGCT
TTTTGTTTTCCAAGAGAGGAGGCGCTGACTCTTTTCATTGACTGTGTCCA
CGTACGACGGTTCAGATACAACAGAGCGAAACCCTTGACCCAATATCCGC
GACATCATGACGAAGATTCTCCTCGTTTTGACTTCGGCTGCAAAGATGGG
CGAGAAGGAAACAGGCGAGTGAGATGTACAAATTTGCACAACTGTATGCC
GATTTCGCACTGCACAGTACATGTATTATCATTACCGTCCATTGTTTACA
TAGTAGTTTTGCAGCATCCTGTGCAGTCATGTATATGTCCAACCTCAACT
CAGTCTTAAACAGATAAATCTCTTGGAGCATTCAACAGACAGTGAAGGAT
CAGCTGCTTTCCCGAGCGCTGGTCGTTTCCTTTTTACTTGTGCTGGGGGG
TTGTTCGTCTCCTGCACAGCCTTGAATCACACATCGTCATCGCTCCGTTC
AATCCATTTACAGGTTATCGGCCGTAAGGTACCGACTGTATATTTTGCAT
GCCGATATCGGTACCACGTCGGTGGACCGTTTCTTTCGACATATGAGCAG
AGGAGTCACAGGATCCGTATCCTGGAACCCCCACTTCCTCCTTCTTGACC
CCCAACTGTATAACCCGCAAGTCATGGTGGGAGCATGTACGGGTTGGTCC
CGTCTGTTCTTTTTGGTGGCGTGAAGAAAGAAGAATCATGATATTCGGAT
CTTTCGCAATGTTGTTGAACTTCATTGTCATGTATTGCAGGAAACAAACG
ACGAGCGCGAAGGCCCTACACCCTCCCTATGAAAGTCGAACACGTGTGTG
TTTGGATTCTATTATAGGCTTTTTTCCGTCTAATTTTAGTTCAGTTGTGA
GAGGTGGAGCACTCGGCGTGCCCTTACCAAGAGTAAATGAATTGTATCCC
CAGTGTGAGAAGGAGCTCATAGAAAAATCCGCGTGACCTCTGGTGTGCTG
TAGTAGTAAGTTGGAGCCACATTAATCCCTCTGTTCTGTACTGTCTATAC
TTTCGATATTGAGAATATCTGATACAGCCACAGGCGCTGGTAGTTGTTAA
GCTCACCGAGCAGCCACGCTGTGCCGAGGATACAAACAGTTGATGGTTGA
AAATGCCGTTTCTGGGCTAGAGGAAAAACAAAAAGGAGATGAAGAGAAAT
TTTACAAGCGCATCGTTCCTACCGTTCCGTGATTTAGAGGAAACTTCGCG
AAGAACTATTGGATCAACCTCTTCTAGATTTCCCAATTTGCGGAAACAGA
GAACTGACTACGAAACATCACGAATTGCGCCGCTATTCTGTCGTTACTCC
TTAGAATCTGTAATTCCTATCCATCCTCGCATACTAAGTCGCAGCAACAC
TTACATCCAATGCCACGCAGTCATGTATACAGTGCTACACTAGTGATGAT
TGACGGACAGATCATCTTTAGACTCTGTTTCAAACACATGGTTATACCGC
TGCTGCGTAAAACTCAACATACTCCGTGCTACGAAGTATTGACTACATAG
GAATACTTGGCTATTTCTCAACATTCGAAATGGAATAGGAGGTGTGCACG
TTCCTAGACTCTGGTACAGTACATACGCTGCACAGGTCAAATGTGAGGTT
TTGCGGGCAACCGTGTGGGAGACCCCCCGCCCTAGAACGGAAGGCCAGTT
GAGCAGGCAAACGACGACCGGAGACCCCCCGCCCTACTTATCGTAGGGCG
TTACCTTTTTCTGTGAACCCCCCCAGAATTGAGTGGAAATTGTCAAGACT
TGCGAGTTGTTTGATCAACTCTGGAGAATGACTATTTTGAATGTTTTCTG
TATTTTCGACAATATTGACGATTGAGGGTTGGGGTTATTTTTGGCATTTT
GGTGACGAGGGTGCACTAACCATCACGATTGATTTGTTTTCTTTTTTGGG
GGGTGTTTGTCCATGGGAGCATAATGTAGGTGGTACAAATCCATATATCC
GCCATGTTTCCAAGTGCGAATTTGATTGTTTAGTCGAAGCCCGTCAATCC
CGGCTCTATCCGCTTGCAGATAGGGTACTTATAGTTTTATTTAGACGGCA
CGCGCGTGTTTTCAGTGCCCAGCGTAGGTGACGCCCATAAACAACCCCCC
CCCCTGTAATCCGTAGGGCATCTTCTTTGTCCGTTTTTTTTCAACCAATA
CGACTCACACCAATAGACAAATATGCATGAGCGGGAGGGACGTCGTACTG
GTCGTCACAGCTCGTAAATTATTCTTGTTTTTAGTGAGGGTTTCCGTCTA
ATTTTGCACAAGGAGCACAAACCACAGATACAAAAAATCAAGCTGTGCAG
TGCGTGGTGGGCTTTTCGACCGAAAATCTGTTTGTGTGGTGTGTCAAGTC
TATTTTCTCAAGCCCAGCCAACAGTGGAAGGCCAGAGAGATGATGCTCGC
TGAGAGACAGGTCTGTTGCCGCATCTAATTTTTTTACACCCCTCGGACCA
ATACGAATAGTTGCAAATGGTTTTCACAAGAAGCTGAAAATATTGGCCTG
AGGTTTAAAATGAGCTCGTGTGTTCTATGTACCCCGGACCACCATCCACG
ACTCCTGATTATACTCGTAAATCGAATGAGCAGATCGGAACTTTATTTTA
TGTGGCCACTCATTCTGAAACTCAGGCAAATACTTTCAGTTTTTTGTGAA
AACCATTTGCAAGTATTCGTATTTGTCCCGGGGGTGAAACTTTGGCTTGC
TGACAAAGAACCAAGGAGGGTTCTACACCTGTCCGACCTCGCTAACCAGT
CACAGCGGCAGCTGCTGAAAATCCCCACCGCTACTGACGTGTTTGCCCAA
CCGGCCGGCAGATGTGCCCTTGACGTGACCGGATAAGGAGTCATCAGCGC
AATACGTAATTTTTCGGGATAACTTGTTCCGCTCGGAGATAATTGCGCTT
CACCAATATGTCGATCCTCTTGAGCATAATTCCCCCTCGGTTCCGGAAAA
ATAACATCGTCGGGGATATTGTGGATTCTGTTTTGAGTATTGACTTCCTG
TGGGGCAATTAAACCGTCAGCAGCCACCGGACACCATCGGTCTGGCCAAC
CGAACCAGCCACCGACAAAATCCACACCAGGTCAATTAGCCACCGCGGTG
GTTGCTGGGAGAACCCACTTGGGTCAACCGGACATCGCGATGACTACTGA
CCTGTCCATGGACAACCGGCAAAAACCAGGCTGTTGGCGATAGACAAGTA
TGCCGGACTACAGTGGGGAAAGTAAGAAAGACGGATTGGTGCTTTCCTGC
TATTGGTGCGACAGAAATACTCTCTGTATTCGCGGAGCTAGGCAGCAAGC
GGCTAACTGTGTGAATAACTAGGGGGGAACTTGCCTGTCCAATCCGTCCC
TTGAGCTTTGCCGGGAAGCAGCTTTCAACCTCCTGTCTGGCAATCGCGCT
TTTCAAACAAATGTAGGCTATTGGCTCGAGGAGGCCGCAGCCCCGTACTG
CATCTTCATCGACGCCGGTCACGAAGTGGACATCGCGTCTCCGGCGGGAG
GCCTTCCTCCGGTCGACAAGGGATCTTTGGTGATCATATTGATGGTGTTG
GTCTGCAGATCTCATCGATTGCAGCCTTTTCTGTTGATAGTTTGGGGCCT
TGGGAGATGAACATATTGAGGGTTTGAAGTTGGAACTATGCTCGTGTTGT
CGACTACTGCCCGTCTCTAGGAGTTAGTTTCACGCAATTAGAGCGAGAGT
ACGGTAGCACAGAGTTTCAACAATATCCGTAGATAGGTATCCGCATTTGG
TTCAATCACGGGACAACCCGGCCATCTTTTAAACGCGGATATTCTGTCAG
TTGAAGATAGCTGTGAAATCGTTTGCTGTGAACAACCTCGATATACGACA
GTGCCCGTCGTAGCCTCCATATCAGATTGACGCATCCTCTCGATTGTTCT
ATGAAATACAATCATTGGACGATGACAACGGATATTGTGAAAGGAAGATC
GTGACAGCTACCGCGTAATTTTCTTTAAAGGCTCACGACCCAATTCCTTC
GTCCCAGGTTCTACAGCAAAAACTGAAGCATAAGTTCGTTGATGGCTAAT
CTTGACATGGCATCAAACGAACTGTGGTCATGTCCATTCCAGGCAGACGC
CTACTTGACGGACCATACACGCCGCTTCAGCGCCGACGCAGCTGCCCAGG
CCAAGCTCTCCTCTTCGATCAAGCTTTCTGACGTTGACGCATCCGCTTAT
GGTGCGATTTTTTGCTCTGGAGGCCACGGAACATGTGTCGACTTCGGCAA
CAACCCAGACGTGCAGGGTGTGCTAGAGAAGGTCCGCAATGATACATGAC
TAAGTTTGTGGTGCGAAAGGCACCCAATTGTTGTGTGTGATTGCTCTCAG
GTTTTCTTTTCGTCGAAGTGCGGTGCTGACTTTAGTCGTCCAGTCCCATG
AATACAGTGTATTGTGCTGTTCATTTTTTTATCTCTTCAAAGAGCACATG
GGCGGTACAGGTGCTTTGGCTTTGAGTCGAGACGTCGGCGACATCCATGC
TTTTACACACATTTTGCTTGCGATAGGGCTCTTGCCCTGTGGTCTGCCTG
AAGGGGAAGAGTCGAATCTGGGCCAACTGTAAGGTGATTTCAGTCATTGC
TGCGATTCCCAAATCATTGTGCTTATCTCCAAAAGGTATACGCGAACGGC
GGCGTTGTCTCGGCGGTCTGCCATGGGCCGACATGTTTCGTTGGCGCGAA
ATCTCCGGACGGTACGGCGCTCGTATCAGGCAAGAAGATGACCGGATTCA
CTGACGCGGAGGAGGAACAGGTGCAGTGCCCAAGTTGTTGGTGTTCGGGG
TCTTGGGTGCTTTATTAGAGTGAGAAGTTTGGTCTGATGTGTTGTATTTG
CTAAGTACAAGCTGATTTTTTATTGTGGCTTCTGGAAACGAAATTGATTA
AAATGTAGAATCTCTTCATATATGCACTTCCCATGTCGCCAGTTTCACAG
TGGGTGGGATTAATTTAATTTCTTGTCGGGGGGAAATCATCAAAATCGCA
TGGGTCCTGATTCTGATATTTGGCAGATCGCGACGGCAATGTGACGTCAC
CGCCATACCACACCCCCTCTTACCGCGTGTTAATTTGTAGGGTGCTTCAG
AGTTCACTTTCGGTCCACCTGCCACGAGAACATGAGGCCAATAGCCGTGA
CCGCCGACGAAAACCCCATCGTTTGTTTTTTCGATTCACACCCAGGCGGG
ACTGACCGCTGTCGTCCCTTATCTTCTCGAGAGCAAACTGAAGGAGCTGG
GCGCAGAATTCAGTTCGGGTGCACCCTGGTCACCATTCGCAGTGGTGGAC
GGTCGTGTAGTCACCGGACAAAACCCGCAGTCGTCGGAATTGGCTGCTAA
GAAGGTCACGGAGGTTATCTCCTCGACATGAATGTACCTCTCCCTAATCC
CAGGCTTATCGATATAGCACTGCTGTTCCCTGCGGCGTCGTAGCACGGAT
GATTTCGCGTGGCCCTATGGATGTGGTCCTTCCGTGGCCGCTGCATTATA
CCAGAGCTGTGTGGCATATATGCAGTGTGAAGCTTATCGTTGGATTACTT
TCTGACAGACCGGAATTGGGTCCCGGCGGGTTGAACTATTGCTAGTTGCC
CGAGACGCGCAAGGAGCTTCACTACAGGCGCCACGGCTACAGCTTCTCAC
ACATTTAATAACCGATTCTTGAAATTGAGGATCGATTTTTTTTGTTGAGG
ACAAAACGATTTTTGGTAATTTTACCATCAACGATTGCTGAATCGTGGTA
AACGGTCGAAAACTGCGTGAAAGCGCATGACGTCAGCGTTCATGGGTCAT
TGTTCCTTCTTTGATCGAGCCGTTGGATGCCGACATACGGGCAAAATATG
AACAATATACAGTATAGCCGGTAACGGTTTTTCTTGGTTTTTGTCGCTGC
CACGCTCCGATCATGACGGGAGCGGGAACTCTGTACTATGTGCACGAAGA
CGTCGTGGCGCAATCATACTTTTCTATGCGCAACCATGTGTCAAGTCCTC
AACTGTTTTACATACTTGCAGCGCATTGCCTGTCCCGCTTCACGAGGTGC
TACATACTTCTAGCAGTGGCTACCTTCCGACACCAGTAAACCTCAGTGTC
GTAAAACAACTCCACTTTATTATGCCTCCTAACCCCTCCTTTCGTGTCCG
GATGCGTCTCCGCTACTTCTCGGACGCGACGGATTGCCTCCAATTGCTGC
AGCACTGGGCTTCACGAACAAACGGCAGTATACAGCATGGTAACCACAGG
ATATGTGATACAGTTACTTGTCAACGAGCCGAAAAGGGCAAAGAAATAGT
GAAAAAGAGGATAAGAACATGTGAAACTCACCCGGAGACGTCACAAGCAC
AATTGTAGAGTAACACAGGAAATGGCTGGGTATAGAAAAAAAAATCGTCG
ATGCCGCAGTCCGGTCTAGGATTGTGGATCCACAGTATCTGCGACAATTT
TGGATTTCCTGTCCATGAGCCAAAAACAGTGAACAGTGCACACAACAGCG
CACACGTGGTCCAGTGATACATTGCGGGTCAGCAGGTCAAAGCATACACC
ATTTATTCAAGTTTGGAGAGGAATATTGAGGTTACTATAGTAGCTTGAAC
AAGCTTTATAGTAGCGTGATGTGTCAGAACGCTGTCAAACCTTTTGCAAT
GTCAAACATTAATACACAATTGGCAACAAGATAGCGCGAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig402:22378..29718-

>mRNA_H-paniculata_contig402.10412.1 ID=mRNA_H-paniculata_contig402.10412.1|Name=mRNA_H-paniculata_contig402.10412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at H-paniculata_contig402:22378..29718- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGAAGATTCTCCTCGTTTTGACTTCGGCTGCAAAGATGGGCGAGAA
GGAAACAGATGACGAAGATTCTCCTCGTTTTGACTTCGGCTGCAAAGATG
GGCGAGAAGGAAACAGGCTATTGGCTCGAGGAGGCCGCAGCCCCGTACTG
CATCTTCATCGACGCCGGTCACGAAGTGGACATCGCGTCTCCGGCGGGAG
GCCTTCCTCCGGTCGACAAGGGATCTTTGGCTATTGGCTCGAGGAGGCCG
CAGCCCCGTACTGCATCTTCATCGACGCCGGTCACGAAGTGGACATCGCG
TCTCCGGCGGGAGGCCTTCCTCCGGTCGACAAGGGATCTTTGGCAGACGC
CTACTTGACGGACCATACACGCCGCTTCAGCGCCGACGCAGCTGCCCAGG
CCAAGCTCTCCTCTTCGATCAAGCTTTCTGACGTTGACGCATCCGCTTAT
GGTGCGATTTTTTGCTCTGGAGGCCACGGAACATGTGTCGACTTCGGCAA
CAACCCAGACGTGCAGGGTGTGCTAGAGAAGGCAGACGCCTACTTGACGG
ACCATACACGCCGCTTCAGCGCCGACGCAGCTGCCCAGGCCAAGCTCTCC
TCTTCGATCAAGCTTTCTGACGTTGACGCATCCGCTTATGGTGCGATTTT
TTGCTCTGGAGGCCACGGAACATGTGTCGACTTCGGCAACAACCCAGACG
TGCAGGGTGTGCTAGAGAAGGTATACGCGAACGGCGGCGTTGTCTCGGCG
GTCTGCCATGGGCCGACATGTTTCGTTGGCGCGAAATCTCCGGACGGTAC
GGCGCTCGTATCAGGCAAGAAGATGACCGGATTCACTGACGCGGAGGAGG
AACAGGTATACGCGAACGGCGGCGTTGTCTCGGCGGTCTGCCATGGGCCG
ACATGTTTCGTTGGCGCGAAATCTCCGGACGGTACGGCGCTCGTATCAGG
CAAGAAGATGACCGGATTCACTGACGCGGAGGAGGAACAGGCGGGACTGA
CCGCTGTCGTCCCTTATCTTCTCGAGAGCAAACTGAAGGAGCTGGGCGCA
GAATTCAGTTCGGGTGCACCCTGGTCACCATTCGCAGTGGTGGACGGTCG
TGTAGTCACCGGACAAAACCCGCAGTCGTCGGAATTGGCTGCTAAGAAGG
TCACGGAGGTTATCTCCTCGACATGAGCGGGACTGACCGCTGTCGTCCCT
TATCTTCTCGAGAGCAAACTGAAGGAGCTGGGCGCAGAATTCAGTTCGGG
TGCACCCTGGTCACCATTCGCAGTGGTGGACGGTCGTGTAGTCACCGGAC
AAAACCCGCAGTCGTCGGAATTGGCTGCTAAGAAGGTCACGGAGGTTATC
TCCTCGACATGA
back to top