mRNA_H-paniculata_contig40191.10410.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40191.10410.1
Unique NamemRNA_H-paniculata_contig40191.10410.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig40191.10410.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI)

HSP 1 Score: 48.1 bits (113), Expect = 7.020e-5
Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:   10 IPRELDEFLVFLEGLDMFLTNDNPWGEPPAAVIGDWGNISAVRSYFVDLYRE 165
            +P++L+  L  L  L  FL ++NPW EPP AV+     ISAV+ YF DL+ E
Sbjct:  227 LPKQLEALLATLSRLG-FLVHENPWQEPPEAVVSK--GISAVQEYFTDLFAE 275
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40191.10410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FL98_ECTSI7.020e-546.15LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40191contigH-paniculata_contig40191:1665..1838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size175
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930230.7698762-CDS-H-paniculata_contig40191:1664..18381622930230.7698762-CDS-H-paniculata_contig40191:1664..1838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40191 1665..1838 +
1691481201.4480007-CDS-H-paniculata_contig40191:1664..18381691481201.4480007-CDS-H-paniculata_contig40191:1664..1838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40191 1665..1838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40191.10410.1prot_H-paniculata_contig40191.10410.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40191 1665..1838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40191.10410.1

>prot_H-paniculata_contig40191.10410.1 ID=prot_H-paniculata_contig40191.10410.1|Name=mRNA_H-paniculata_contig40191.10410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
DGEIPRELDEFLVFLEGLDMFLTNDNPWGEPPAAVIGDWGNISAVRSYFV
DLYREKRV
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mRNA from alignment at H-paniculata_contig40191:1665..1838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40191.10410.1 ID=mRNA_H-paniculata_contig40191.10410.1|Name=mRNA_H-paniculata_contig40191.10410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig40191:1665..1838+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGGGAAATTCCGAGGGAACTTGATGAGTTCCTTGTGTTTCTGGAGGG
ACTTGATATGTTCCTCACTAACGACAATCCATGGGGGGAGCCCCCAGCTG
CTGTGATTGGAGACTGGGGAAACATTTCCGCAGTGAGGTCTTATTTCGTG
GATCTCTACCGGGAGAAGAGAGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig40191:1665..1838+

>mRNA_H-paniculata_contig40191.10410.1 ID=mRNA_H-paniculata_contig40191.10410.1|Name=mRNA_H-paniculata_contig40191.10410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig40191:1665..1838+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGGGAAATTCCGAGGGAACTTGATGAGTTCCTTGTGTTTCTGGAGGG
ACTTGATATGTTCCTCACTAACGACAATCCATGGGGGGAGCCCCCAGCTG
CTGTGATTGGAGACTGGGGAAACATTTCCGCAGTGAGGTCTTATTTCGTG
GATCTCTACCGGGAGAAGAGAGTAGATGGGGAAATTCCGAGGGAACTTGA
TGAGTTCCTTGTGTTTCTGGAGGGACTTGATATGTTCCTCACTAACGACA
ATCCATGGGGGGAGCCCCCAGCTGCTGTGATTGGAGACTGGGGAAACATT
TCCGCAGTGAGGTCTTATTTCGTGGATCTCTACCGGGAGAAGAGAGTA
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