mRNA_H-paniculata_contig4019.10409.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4019.10409.1
Unique NamemRNA_H-paniculata_contig4019.10409.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4019.10409.1 vs. uniprot
Match: D8LIK1_ECTSI (Prostaglandin E synthase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIK1_ECTSI)

HSP 1 Score: 359 bits (921), Expect = 3.180e-117
Identity = 170/203 (83.74%), Postives = 184/203 (90.64%), Query Frame = 1 
Query:    1 EVNPLTKKEIKFSEDYRKVPIVRMGGEFLKDSPVIIQALVARLRETGAMSDEDYAVFCSPDAEKWAMWADKHLAVLLFPNITRNFSESYQAFSYVRDVETFSMVDKVANQVIGSTAMWAAQGKIKKKYNIEDEREALFSAIKDWTDALEHVKGPFIGGDRPNLGDLCVFGCIKAIEGLDTHKDVLALDGVGVWYEQMMTTLDY 609
            EVNPLTKKEIKFSEDYRKVPIVRMGGE  KDSPVII  L+ARLRET  MSDE++AVFCS DA+KWA WADK LAVLLFPN+TRNFSESYQAFSYV DV+TFSM+DK++NQVIGS AMWAAQGKIKKKYNI+DEREALFSAIKDWTDAL  V GPF GGDRPNLGDLCVFGCI+AIEGLDTHKDVLA  GVG WY+ M++TLDY
Sbjct:   64 EVNPLTKKEIKFSEDYRKVPIVRMGGELFKDSPVIIDELIARLRETKVMSDEEHAVFCSSDAKKWAEWADKQLAVLLFPNLTRNFSESYQAFSYVNDVDTFSMMDKISNQVIGSAAMWAAQGKIKKKYNIDDEREALFSAIKDWTDALREVDGPFFGGDRPNLGDLCVFGCIRAIEGLDTHKDVLARQGVGAWYQSMVSTLDY 266
[Close]
BLAST of mRNA_H-paniculata_contig4019.10409.1 vs. uniprot
Match: A0A835YKS9_9STRA (Prostaglandin E synthase 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKS9_9STRA)

HSP 1 Score: 260 bits (665), Expect = 7.110e-79
Identity = 128/204 (62.75%), Postives = 154/204 (75.49%), Query Frame = 1 
Query:    1 EVNPLTKKEIKFSEDYRKVPIVRMGGEFLKDSPVIIQALVARLRETGAMSDEDYAVFCSPDAEKWAMWADKHLAVLLFPNITRNFSESYQAFSYVRDVETFSMVDKVANQVIGSTAMWAAQGKIKKKYNIEDEREALFSAIKDWTDALEHVKGPFIGGDRPNLGDLCVFGCIKAIEGLDTHKDVLALD-GVGVWYEQMMTTLDY 609
            EVNPLTKKEIKFS+DY+KVPIVR+  ++L DSP IIQAL+  L+  GA+S +    F SPDA  WA WADK LAVLLFPNITR+F ESYQAFSYV+ V TFS +DK ANQ +GS AMW AQGKIKKKYNIEDEREAL+ A++ WT  ++  K  F GG  PNLGDLCVFGC++AIEGLD H + +  +  +  WY +M+  L Y
Sbjct:   74 EVNPLTKKEIKFSKDYQKVPIVRLDEQYLHDSPAIIQALLDGLKARGAVSKDQLDAFASPDAMNWAEWADKQLAVLLFPNITRSFGESYQAFSYVQGVSTFSALDKAANQALGSFAMWMAQGKIKKKYNIEDEREALYGALRQWTTEIQGKK--FSGGAVPNLGDLCVFGCLRAIEGLDAHTEAMQEEKALAEWYARMLGVLQY 275
[Close]
BLAST of mRNA_H-paniculata_contig4019.10409.1 vs. uniprot
Match: W7TEG9_9STRA (Prostaglandin E synthase 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEG9_9STRA)

HSP 1 Score: 239 bits (610), Expect = 3.380e-69
Identity = 117/197 (59.39%), Postives = 145/197 (73.60%), Query Frame = 1 
Query:    1 EVNPLTKKEIKFSEDYRKVPIVRMGGEFLKDSPVIIQALVARLRETGAMSDEDYAVFCSPDAEKWAMWADKHLAVLLFPNITRNFSESYQAFSYVRDVETFSMVDKVANQVIGSTAMWAAQGKIKKKYNIEDEREALFSAIKDWTDALEHVKGPFIGGDRPNLGDLCVFGCIKAIEGLDTHKDVLALDGVGVWYEQM 591
            +VNPLTK EIKFS DYRKVPI R+G E ++DSPVI++ +   L         D  VF SPDA +WA WADK LAVLLFPNITR+F ES+QAFSYV +V  FS +DK++NQ +G+TAMWAAQGKIKKKYNI DER ALF A++ WT   E  + PF+GG +PN+GDL V+ CI AIEGLD  KD++A   +  WY ++
Sbjct:  191 DVNPLTKAEIKFSSDYRKVPIARLGQEVVRDSPVIVKRIADMLYAARVAPTRDLDVFFSPDAMRWAEWADKELAVLLFPNITRSFGESFQAFSYVNEVPHFSFLDKLSNQWVGATAMWAAQGKIKKKYNIADERTALFDALQRWT--REVGEKPFLGGTQPNVGDLGVYACIHAIEGLDAFKDLMANTDISEWYTRV 385
[Close]
BLAST of mRNA_H-paniculata_contig4019.10409.1 vs. uniprot
Match: A0A7S1XY88_9STRA (Prostaglandin E synthase 2 (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XY88_9STRA)

HSP 1 Score: 217 bits (553), Expect = 5.540e-63
Identity = 109/193 (56.48%), Postives = 139/193 (72.02%), Query Frame = 1 
Query:    1 EVNPLTKKEIKFSEDYRKVPIVRMGGEFLKDSPVIIQALVARLRETGAMSDEDYAVFCSPDAEKWAMWADKHLAVLLFPNITRNFSESYQAFSYVRDVETFSMVDKVANQVIGSTAMWAAQGKIKKKYNIEDEREALFSAIKDWTDALEHVKGPFIGGDRPNLGDLCVFGCIKAIEGLDTHKDVLALDGVGVW 579
            EVNPLTK + K   DY+KVP+  +GGE + DSP I++ L A++ E     D D+A F S  AE+W  +ADK LAVLLFPNITRN++ESYQAFSYV DV TFS +DK++N  IGSTAMW AQGK+KKKY IEDER+ALFSA+  + +AL      F+GG  PN+GD+ VFG I+AIEG+D   D+ +   +G W
Sbjct:   48 EVNPLTKAQTKAVTDYKKVPVANIGGEIVTDSPQIVRVLKAKMAEA---DDVDFAGFFSEAAEEWTEFADKKLAVLLFPNITRNWNESYQAFSYVNDVPTFSSMDKMSNLAIGSTAMWLAQGKLKKKYGIEDERDALFSAVTKFEEALGD--NAFLGGANPNMGDIAVFGVIRAIEGMDAFNDLQSETKIGPW 235
[Close]
BLAST of mRNA_H-paniculata_contig4019.10409.1 vs. uniprot
Match: A0A0M0JG54_9EUKA (Prostaglandin E synthase 2 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JG54_9EUKA)

HSP 1 Score: 214 bits (546), Expect = 2.680e-61
Identity = 108/198 (54.55%), Postives = 139/198 (70.20%), Query Frame = 1 
Query:    1 EVNPLTKKEIK-FSEDYRKVPIVRMGGEFLKDSPVIIQALVARLRETGAMSDEDYAVFCSPDAEKWAMWADKHLAVLLFPNITRNFSESYQAFSYVRDVETFSMVDKVANQVIGSTAMWAAQGKIKKKYNIEDEREALFSAIKDWTDALEHVKGPFIGGDRPNLGDLCVFGCIKAIEGLDTHKDVLALDGVGVWYEQM 591
            EVNPLTK EIK +S  YRKVPI ++G E + DS VI QAL+ R+   G +  +  A F SP A +WA W+D+  AVLLFPNITR+FSESYQAF YV  V  FSM+DKV+NQ+IGS  MW AQGKIKKKY I+DER A+ + I  W +     K PF GG +PN  D+CVFGC+KAI+  D +K+++A   +  WY+++
Sbjct:   74 EVNPLTKGEIKAWSGGYRKVPIAKLGDEQVNDSGVISQALLDRMGTAGVLDAKQLAEFRSPKALEWAKWSDEKFAVLLFPNITRSFSESYQAFGYVMSVPHFSMLDKVSNQIIGSFFMWMAQGKIKKKYGIDDERAAVVAGINHWLNEGVGSK-PFAGGKQPNFADVCVFGCLKAIDRTDAYKEIMAETAIKPWYDRV 270
[Close]
BLAST of mRNA_H-paniculata_contig4019.10409.1 vs. uniprot
Match: A0A7S0MFA7_9CRYP (Prostaglandin E synthase 2 n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MFA7_9CRYP)

HSP 1 Score: 214 bits (546), Expect = 5.180e-61
Identity = 111/207 (53.62%), Postives = 139/207 (67.15%), Query Frame = 1 
Query:    1 EVNPLTKKEIKFSED---------YRKVPIVRMGGEFLKDSPVIIQALVARLRETGAMSDEDYAV-FCSPDAEKWAMWADKHLAVLLFPNITRNFSESYQAFSYVRDVETFSMVDKVANQVIGSTAMWAAQGKIKKKYNIEDEREALFSAIKDWTDALEHVKGPFIGGDRPNLGDLCVFGCIKAIEGLDTHKDVLALDGVGVWYEQM 591
            EVNPLTK E+ F++D         YRKVP+VR+GG+ + DSPV++  LV  L + G +     A  +  P   +W  WADK LAVLLFPN+TR  SESYQAF YV  V  FS +DKV+N++ GS AMW AQGKIKKKY I DER AL +++  WTDA+   K  F+GG  PNL DLCVFG +++IEGL+TH  VL    VG WYE+M
Sbjct:   87 EVNPLTKSELSFTKDLPEDHPAHKYRKVPLVRIGGDVVADSPVVLDRLVEGLGKEGVIGAAQMARDYKDPKVAEWVRWADKELAVLLFPNLTRTLSESYQAFGYVDSVPHFSFLDKVSNRMAGSLAMWLAQGKIKKKYGITDERAALRASLDRWTDAIG--KSDFLGGASPNLADLCVFGTLRSIEGLETHAIVLRETQVGPWYERM 291
[Close]
BLAST of mRNA_H-paniculata_contig4019.10409.1 vs. uniprot
Match: A0A7S2C557_9EUKA (Prostaglandin E synthase 2 n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2C557_9EUKA)

HSP 1 Score: 204 bits (518), Expect = 6.580e-57
Identity = 104/203 (51.23%), Postives = 131/203 (64.53%), Query Frame = 1 
Query:    1 EVNPLTKKEIK-FSEDYRKVPIVRMGGEFLKDSPVIIQALVARLRETGAMSDEDYAVFCSPDAEKWAMWADKHLAVLLFPNITRNFSESYQAFSYVRDVETFSMVDKVANQVIGSTAMWAAQGKIKKKYNIEDEREALFSAIKDWTDALEHVKGPFIGGDRPNLGDLCVFGCIKAIEGLDTHKDVLALDGVGVWYEQMMTTLD 606
            EVNPLTK EIK +S  Y+KVPI  + GE + DSPVI   ++ RL  +G +  +    F SP A +WA W+D+ LAVL FPNITR F E+Y+AF YV  V  FS +DK ANQ IGS  MW AQGKIKKKY I+DEREA  S +  W         PF GG+RPNL D+ VFG +KAI+    H D++A   V  WYE+M+  ++
Sbjct:   99 EVNPLTKSEIKAWSGGYKKVPIALIAGEQVNDSPVICTQILDRLAASGQIDKKLLDEFRSPSALEWAKWSDEKLAVLAFPNITRTFGEAYEAFGYVWGVPHFSQLDKAANQAIGSFFMWMAQGKIKKKYGIDDEREAFVSGVNKWMSEAVGTT-PFAGGERPNLADVAVFGLLKAIDRTAAHSDIMAATSVAPWYERMLEAVE 300
[Close]
BLAST of mRNA_H-paniculata_contig4019.10409.1 vs. uniprot
Match: A0A7S0IJQ6_9EUKA (Prostaglandin E synthase 2 n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IJQ6_9EUKA)

HSP 1 Score: 203 bits (516), Expect = 8.280e-57
Identity = 105/204 (51.47%), Postives = 140/204 (68.63%), Query Frame = 1 
Query:    1 EVNPLTKKEIKFSEDYRKVPIVRMGG------EFLKDSPVIIQALVARLRETGAMSDEDYAVFCSPDAEKWAMWADKHLAVLLFPNITRNFSESYQAFSYVRDVETFSMVDKVANQVIGSTAMWAAQGKIKKKYNIEDEREALFSAIKDWTDALEHV-KGPFIGGDRPNLGDLCVFGCIKAIEGLDTHKDVLALDGVGVWYEQM 591
            +VNPLTKKEIKFS++YRKVPI  +GG        + DSP+I   L+ R+  + A+  ++ A F S  + +WA W+DK LAVLLFP +TR F+ES+QAF YV  V  FSMVDK++NQV+G+ AMW AQGKIKKKY I+DE  A+  AI  W    E V +  F GG +P+LGD+ V+GC+KAI+   T  +++A  GV  WYE+M
Sbjct:   79 DVNPLTKKEIKFSKEYRKVPIAMLGGLEGSGAVQVNDSPLIADTLLERMELSKAVRSDELAHFRSATSLEWAEWSDKKLAVLLFPRMTRTFAESFQAFGYVMQVPHFSMVDKLSNQVVGAFAMWMAQGKIKKKYAIDDEAAAVREAIAHWL--KEGVGEASFAGGQKPHLGDVAVYGCLKAIDRTSTFSEIMAETGVKPWYERM 280
[Close]
BLAST of mRNA_H-paniculata_contig4019.10409.1 vs. uniprot
Match: A0A7S0HU74_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HU74_9CRYP)

HSP 1 Score: 201 bits (510), Expect = 5.780e-56
Identity = 104/210 (49.52%), Postives = 139/210 (66.19%), Query Frame = 1 
Query:    1 EVNPLTKKEIKFSED---------YRKVPIVRMGGEFLKDSPVIIQALVARLRETGAMSDEDYAVFCS----PDAEKWAMWADKHLAVLLFPNITRNFSESYQAFSYVRDVETFSMVDKVANQVIGSTAMWAAQGKIKKKYNIEDEREALFSAIKDWTDALEHVKGPFIGGDRPNLGDLCVFGCIKAIEGLDTHKDVLALDGVGVWYEQM 591
            EVNPL+KKEI F+ +         YRKVPI  +G + + DS +I+ A+V +L E     +E   + CS    P  ++W  WAD+ LAVLLFPN+TR FSES+QAFSYV+ V TFS++DK++N V G+TAMW AQGK+K KY I DER+AL  A+  W DAL+  + PF+GG  PNL DLCVFG ++A++G  T   V+    V  WY +M
Sbjct:   72 EVNPLSKKEINFTRELPSDHACSNYRKVPIALVGEDLIADSSLILNAIVEKLSEE---KEEKIKLLCSSAKDPQVQEWVRWADQELAVLLFPNLTRTFSESFQAFSYVQQVPTFSLLDKLSNHVAGATAMWLAQGKLKSKYKISDERQALALALAKWADALD--RKPFLGGSSPNLADLCVFGVLRAVDGSATQT-VIEESPVSDWYGRM 275
[Close]
BLAST of mRNA_H-paniculata_contig4019.10409.1 vs. uniprot
Match: A0A7S4I728_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4I728_9EUKA)

HSP 1 Score: 191 bits (485), Expect = 4.730e-53
Identity = 98/164 (59.76%), Postives = 118/164 (71.95%), Query Frame = 1 
Query:    1 EVNPLTKKEIK-FSEDYRKVPIVRMGGEFLKDSPVIIQALVARLRETGAMSDEDYAVFCSPDAEKWAMWADKHLAVLLFPNITRNFSESYQAFSYVRDVETFSMVDKVANQVIGSTAMWAAQGKIKKKYNIEDEREALFSAIKDWTDALEHVKGPFIGGDRPNL 489
            EVNPLTKKE K  + +YRKVP++  G E + DSPVI Q ++ R+ E G +S  +   F SP A+KWA W+DK  +VLLFPNITRNF ESY+AF YV DV  FSMVDKV+NQ+IGS  MW AQGKIKKKY+I DER AL + I++W       K PF GGDRPNL
Sbjct:   76 EVNPLTKKEYKTINSEYRKVPVIFFGDEQVNDSPVIAQTILKRIGEAGVVSAAELDAFNSPSAQKWAGWSDKQFSVLLFPNITRNFGESYEAFGYVMDVPHFSMVDKVSNQLIGSFFMWLAQGKIKKKYSITDERAALHAGIEEWLADGVGDK-PFAGGDRPNL 238
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4019.10409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIK1_ECTSI3.180e-11783.74Prostaglandin E synthase 2 n=2 Tax=Ectocarpus TaxI... [more]
A0A835YKS9_9STRA7.110e-7962.75Prostaglandin E synthase 2 n=1 Tax=Tribonema minus... [more]
W7TEG9_9STRA3.380e-6959.39Prostaglandin E synthase 2 n=2 Tax=Monodopsidaceae... [more]
A0A7S1XY88_9STRA5.540e-6356.48Prostaglandin E synthase 2 (Fragment) n=1 Tax=Phae... [more]
A0A0M0JG54_9EUKA2.680e-6154.55Prostaglandin E synthase 2 n=1 Tax=Chrysochromulin... [more]
A0A7S0MFA7_9CRYP5.180e-6153.62Prostaglandin E synthase 2 n=1 Tax=Cryptomonas cur... [more]
A0A7S2C557_9EUKA6.580e-5751.23Prostaglandin E synthase 2 n=1 Tax=Haptolina brevi... [more]
A0A7S0IJQ6_9EUKA8.280e-5751.47Prostaglandin E synthase 2 n=1 Tax=Calcidiscus lep... [more]
A0A7S0HU74_9CRYP5.780e-5649.52Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S4I728_9EUKA4.730e-5359.76Hypothetical protein (Fragment) n=1 Tax=Prymnesium... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4019contigH-paniculata_contig4019:9233..14577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score315.1
Seed ortholog evalue2.2e-83
Seed eggNOG ortholog2880.D8LIK1
KEGG rclassRC00672
KEGG koko:K05309
KEGG ReactionR02265
KEGG Pathwayko00590,ko01100,map00590,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.prostaglandin-E synthase activity
EggNOG OGsKOG3029@1,KOG3029@2759
EC5.3.99.3
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size1885
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4019.10409.1prot_H-paniculata_contig4019.10409.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4019 10506..14508 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930230.6725526-UTR-H-paniculata_contig4019:9232..105051622930230.6725526-UTR-H-paniculata_contig4019:9232..10505Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4019 9233..10505 -
1691481201.407178-UTR-H-paniculata_contig4019:9232..105051691481201.407178-UTR-H-paniculata_contig4019:9232..10505Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4019 9233..10505 -
1622930230.7254677-UTR-H-paniculata_contig4019:14508..145771622930230.7254677-UTR-H-paniculata_contig4019:14508..14577Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4019 14509..14577 -
1691481201.4402142-UTR-H-paniculata_contig4019:14508..145771691481201.4402142-UTR-H-paniculata_contig4019:14508..14577Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4019 14509..14577 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930230.68684-CDS-H-paniculata_contig4019:10505..107871622930230.68684-CDS-H-paniculata_contig4019:10505..10787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4019 10506..10787 -
1691481201.4172108-CDS-H-paniculata_contig4019:10505..107871691481201.4172108-CDS-H-paniculata_contig4019:10505..10787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4019 10506..10787 -
1622930230.700194-CDS-H-paniculata_contig4019:12499..125591622930230.700194-CDS-H-paniculata_contig4019:12499..12559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4019 12500..12559 -
1691481201.424754-CDS-H-paniculata_contig4019:12499..125591691481201.424754-CDS-H-paniculata_contig4019:12499..12559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4019 12500..12559 -
1622930230.713347-CDS-H-paniculata_contig4019:14307..145081622930230.713347-CDS-H-paniculata_contig4019:14307..14508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4019 14308..14508 -
1691481201.4324677-CDS-H-paniculata_contig4019:14307..145081691481201.4324677-CDS-H-paniculata_contig4019:14307..14508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4019 14308..14508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4019.10409.1

>prot_H-paniculata_contig4019.10409.1 ID=prot_H-paniculata_contig4019.10409.1|Name=mRNA_H-paniculata_contig4019.10409.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=181bp
MGGEFLKDSPVIIQALVARLRETGAMSDEDYAVFCSPDAEKWAMWADKHL
AVLLFPNITRNFSESYQAFSYVRDVETFSMVDKVANQVIGSTAMWAAQGK
IKKKYNIEDEREALFSAIKDWTDALEHVKGPFIGGDRPNLGDLCVFGCIK
AIEGLDTHKDVLALDGVGVWYEQMMTTLDY*
back to top

mRNA from alignment at H-paniculata_contig4019:9233..14577-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4019.10409.1 ID=mRNA_H-paniculata_contig4019.10409.1|Name=mRNA_H-paniculata_contig4019.10409.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5345bp|location=Sequence derived from alignment at H-paniculata_contig4019:9233..14577- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGTTAATCCGCTGACGAAGAAGGAAATTAAGTTCTCGGAAGATTACAG
GAAAGTTCCGATCGTTCGCATGGGCGGAGAATTTCTTAAGGACTCCCCGG
TCATAATTCAGGCTCTCGTCGCCCGCCTTCGCGAAACCGGAGCAATGTCG
GACGAGGATTATGCGGTGTTTTGTTCCCCCGACGCCGAGAAGTGGGCTAT
GTGGGCAGACAAGCACCTCGCCGTGCTGCTCTTCCCCAATATCACCAGAA
ATTTCTCGGAATCTTATCAGGTGGGATTGGTTGAATGGTTATTTCGGGGG
TTTGGGGGGTGTGGGTGACATTTTTTTGACTTATTCTTGGTTTTAACAGA
AGAGTTAATTACACTTGCACGAGCGTGTATCTATCAGATTAAATAAGATG
ATAACGCAACTGATGAATCAGAAAATTCATGAGATTATTATGAGGTGGTG
GGTTTCACTCAACACGCACCAACTGAATCGGTTTTTTTTCTTTCTTGAAG
TTAGATACTCTATTACACCGTTCTGCCGGTGGTCACCAGAATCTTGGAAG
GTGACTCTTGCACAACACAAAAAAAATTTCTTCCAAGTTGCGGTATTTCG
AAAAACAGGAATATAGTCGTCCTGCTCAGTTGATGCAATGGCCTGCAGCT
AGCTCGAGTCGTTCGTTTGTATCTCTCAGGGTGATGTTCTCCTTGCTGCA
ACGACCATAGTAAAATCAGGTCATTGTTATTACTATGAGCCACCCCTCAT
CCCTGTCCTTAACCCCAACATTGCACAGTGAAGAGGTCAGGTCAATGGCC
TACGACTAATGACTATTCCATGCGTGATCAGTAACCCCCCCCGCCTCCGT
TCATCTTGTAATTATATTTCAAAATGTGTCACACACACATGCACACACAC
GAAGCGACGTGTTTGCTTTGTGTGGCGCAACGTTGGTTATACGTACACGC
GGAGATCAAAAGTTTGGTGTGGCGCTTGGAGTACAGTTACGCCTACTGTA
TGTGCAACTTTCGGTTCCTGGGATACCTAAAACCCTATGGCGGAATCGGT
TTGGCGTAGCAACACAAGGATAATGATTGGTGGCCAGTGTCACCCTTGTG
AAACACAGCCTGGCCTGCGAATATTCGTCATGCTCCATCCTGGAAATGTA
GGGATGTGAGGTCGATGACTGAGAGACCACGACGATCTCACGAGTAACTC
CCCCCTCACCACCGCCCCTTCCCCCCGATTTGAGTTTGAATATTGTCGTT
GAATATATGTAGTCATGATCCAAAATTCATGATTATGGGCTAATGTGACC
TTGCATACTTGAAGGTGTTGACCTAGGTCCGAGGCTATAAACAGCCGATC
CTCGAAATTGAGGATCGAGTTTTTCATTGAGGATGAAACGTTTGAAATGT
AACTTTTGTTGACATGCCAAACGCAAGAAACCGAGGGGCATAAGGTATGC
TTCTTTTCAATAGCTGTCGGAGGTACCTACTTTCGATTGGATTGGGCCAG
CGAATCTCGAGTCACACGAAATCAAAAATGAGAAAAACCGTTACCGGCTA
TATATTTTTTCGGATTTTGCCCGTATCTCGGCATCCAATGGCTCGATTAA
AAAAAGAATAATGGTCTGTGAACGCTGCCGTTATGAGCGTTCACGCAGTC
TTGGACCGTTTTGCATGGTTCAACAATCGTTGTTGTTAAAATTACCAAAA
AAGGTTGCGTCGCTCCTCAATTTCGAGGATCTGCTGTTAAATGTGTGCCT
ATTTTTCCTCTTTCACACTAAAATACTAGATGTATCCTCTATTTGTACAC
ACACTAGTGAACGATACAGTTGTGATTCCTGATGTATATAACACGTATTG
CTGCAGTAGTCCACATGCTATTTTTGGTCCGAACTGTGCAGCACATCACT
CAAAGAGCAACCTTCCTAAGGTAAGACGCGAAATGTATGGATCATGGTGT
GCCTGAAAGGAAGCTTTTGCCCCCCCCCCCCCCCGTTTTTCTCTGACTGA
TGACCAAATTCAACGCAGGCGTTTTCGTACGTGAGGGACGTGGAGACCTT
CAGCATGGTGGACAAGGTCGCGAATCAGGTTTGTTTTTGTTGGTGCCATT
TTTCCTATTTGGCGTATGGTAAATGTAATCTATATCGCTGATTGGTAAAA
GGGCCCCCGCAACATGTATTTGGTCTCAGAAGATGGCCTTTGGTCGAAAC
TAACCTCTTAATTTTGCTGTATCTAGGGTTTTCGACATGTAACAGGACGG
GCAAGGAGGGTCGGTATGCGGACATCTCGAAATGGAACACTGTAGTTTAG
ATTTGGTCGAGACGAAACGGGATAAGACCATCACCTTTTCGTTCCGTCCA
TTCCTGTGAGGGTCTCGTAGTCTCGTATTGAAGCCCTGGTTGTATCTACC
GTGCCTTCCTTCGGAGTAAGCGTTTTCGACGGTTTTTCACCTCCTGTCAT
TTGCTACTCATGACCATCCATCCTATCCCAATCGGTTTATACAAGAATGT
CGCTTCGAGGTAGTTTTGGGGGGTCTATGCTCCAGGCAACTTCCAAAAGC
GATTTCACGGACACTGGCCTTTCATGGGAACGCGCAGCGAGCCTCTGTTC
GCGGGTTGTAGGTTAGGACGCAATGGATTAAACAAACAATACTCTTGAGC
CGAAATATTGTAAATCTTGGAATACGTGTTCTCGTGTTTTCGCACGTTCG
CTCTTCTCTGCCTCAGGGATGTTTTGCAATTACAAGGTGTTGAAGGTTTG
ACGGTTGTAAGACATGTAAACTCTGTCAGCAGGCTCGCACTGTGGTGCTT
CGTCGCTCGAATCTGATTTTACGAACCCTTACTGTTGACGAAGCAGTAAC
AGTTACCTCTTGTTCCGGTGTTGCTATTAGAGCGAGCGAAATGAATTTCT
TTCGCAAAGTTCGGTTAGGTCATCTGTGTAGCCAAGAGTGAGCTCGTCTC
GAACCCCAGTCCACGTACACCAACGTCTCGTTTACAAGACAAACGCCTTG
TCAGAAGCAGTGACTCTTTGTGTTTCTCTCGAGGAATATAGACATTTAAA
AAAAGGAACTCCTTTCGTAACTAGATGTTTTTGTGGGTGAGCTTGGGTAT
GGGGGATGTTTGCGATAAGCAGGCTCATTATTTTAGCTGTATACGACCAA
AGACGGAATCTGCAAAAATAGTTCGTGTTGTGCGCACGCTCTATTGGAAT
ATATATATATATATATATTTTTTTTTTATTCGACACTGGTGACGAATTTC
GAACCTTTTCCGGTAGAGCAACGATCTAAATTATCCCCAAGACACGTAGT
TCAATGGCCTTCAACCTTTTGAACCACACATGGATTCGTAACCCTGCGCG
TGATCCCATGTTATTCAATGTTGTCTTTTTTTTTTTTAATCTAAACAGCT
ATCAATTTGTAATATTTAAACCCCAATGTTTCTTCGCACGGTTGCCGTCT
TTTTTGTTCCTGATGCTTTACCGTTTGCATTGACTCACGATCAGTTGCGG
CATGGACAGCTTTTCTGTAGATGCTGTCCCGCTTGTGACTCCCACACCCC
CCTTCACAGTCGTGTAATTCATTTGTGGCTTCAGCCACTGTGCAATATTG
AAAATTACTGGGGGTACCTCAAATTTTACTGATAAGTGAGGAAGGGCACA
TTTTCTAGTTGTACATTTTGAACCCTCGCTGTCATGCTATTAAAACGTCA
TTTTCCAATCAAGTCTCAATGTGGATGGTGTTCTGCTTGTGGTGCCCCTT
CCCCCTTCCCCCGCCTTCTTTCTCTTCTCCCAAAATGAAGGTGATCGGGT
CGACAGCCATGTGGGCGGCTCAGGGCAAAATCAAGAAGAAGTATAACATC
GAGGATGAGAGGGAGGCTCTATTCTCAGCGATAAAGGACTGGACAGACGC
GTTGGAGCATGTGAAGGGACCGTTCATCGGCGGAGATCGACCCAACTTGG
GAGATCTGTGCGTATTCGGGTGCATCAAGGCAATTGAAGGGTTGGACACG
CACAAGGATGTGCTGGCGCTGGACGGGGTGGGGGTGTGGTACGAGCAGAT
GATGACCACGCTCGACTACTGAGTTTGGTTCTTTCTTCAAAACAGTATCA
ACCTATCTATGCGCACTTCATAATAAATCTTGACGCCGTGATCCTTTTTT
TTTTTTCTTTTTCGTTGTTTGTGTCCTCCGTGTTTGTTTCGAGGTGTTGT
GAAATGTTGGTTGTGTGTGTGTTCGTTGGCGTCCCCGTTATTGATTTAAG
ATTGGTGACAAGTGTACACAGCTGAAGTTCGAGGTAAGCTGTACTAGTTC
AACATGACTTAGCGCCCCCCCCCCCCCACATCCCCCGCCCCCTCCTCTTC
AAGATTTTATTTGTAATGATGGCGTTTTTTATGGTGTCGATCGAGCGCGC
TTGTTTTTTTTCATCTGTGTTCGTCTTTGCTCCCCAATAGGTTTATGAAC
AGAGAATATAACAATTCGCCACCCGGATAGATATAAATACTTGGAGCATC
GGCGACAAAAGTTACAAAAGCACATGTATTCCTGGAAGGGTTCGCATGAA
CACGTTTATCTTATATGTGCCCCGGACCATCTACAAGAAAGCGACTGCTC
CGACTAATAGTGGTAGTAGAAACAGATAAATAGCGGTCAACATTCCGTTC
AGTGTGCCCACACATTCTAGAGTTCGGGCGAATATTGGTTTATTTTTCGG
CGGGAGTGTTGAAAGTTTTCGTCTTTGTCCGGGACGTCAAGCATGGGTAG
CGCCCTCTGGAGTACTGACTGTAAGAGCATTATCCTAATATGACTAAAAT
GCGAGTACCCCATACGCTGAAGTCATGGATAAGGAATTACGACGGCACAC
GCGGAAGTACGTACGTGCACAGTACCTCTGTACTGTGAGGATGTAAATTC
TCTGGAGCTTAATACTGTAGCTCTCGCGTCGCAGCCTTCACCGTTCTGCA
GTTCCAACATGATAATCTAATCGTGTGGAGTTGGCTCTCCATATGGGGGG
GAATAAACGGCGATGACGATCTTGACAATTACTGTAAGCCACCATCCGAC
CGTGTGGATTCTGGGCGAGACGGGTTGTATTTTCTGTGCCATTGAGATAG
AGCACAAAACATCAGATTGTAAAAGTTTAGGATAGCTTTTTTCTTCAGGA
TGAAACTCATGTTAGGATAAAGCAGAAACGGTGACTTTTGTCACACCCAC
CTTCGTTGTAGAGCATTTTCACCCGCTTGAAGCGCCATGGAAAGTGTGGT
GCATCATAATTTCGATAGGACTGGTGTCGTGTCGCCTGAGGAACCTATAT
GTGCCTATTATCTGTAGTTCGACCCGAAGTAGGAAGGGGCCGGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4019:9233..14577-

>mRNA_H-paniculata_contig4019.10409.1 ID=mRNA_H-paniculata_contig4019.10409.1|Name=mRNA_H-paniculata_contig4019.10409.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at H-paniculata_contig4019:9233..14577- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGGAGAATTTCTTAAGGACTCCCCGGTCATAATTCAGGCTCTCGT
CGCCCGCCTTCGCGAAACCGGAGCAATGTCGGACGAGGATTATGCGGTGT
TTTGTTCCCCCGACGCCGAGAAGTGGGCTATGTGGGCAGACAAGCACCTC
GCCGTGCTGCTCTTCCCCAATATCACCAGAAATTTCTCGGAATCTTATCA
GATGGGCGGAGAATTTCTTAAGGACTCCCCGGTCATAATTCAGGCTCTCG
TCGCCCGCCTTCGCGAAACCGGAGCAATGTCGGACGAGGATTATGCGGTG
TTTTGTTCCCCCGACGCCGAGAAGTGGGCTATGTGGGCAGACAAGCACCT
CGCCGTGCTGCTCTTCCCCAATATCACCAGAAATTTCTCGGAATCTTATC
AGGCGTTTTCGTACGTGAGGGACGTGGAGACCTTCAGCATGGTGGACAAG
GTCGCGAATCAGGCGTTTTCGTACGTGAGGGACGTGGAGACCTTCAGCAT
GGTGGACAAGGTCGCGAATCAGGTGATCGGGTCGACAGCCATGTGGGCGG
CTCAGGGCAAAATCAAGAAGAAGTATAACATCGAGGATGAGAGGGAGGCT
CTATTCTCAGCGATAAAGGACTGGACAGACGCGTTGGAGCATGTGAAGGG
ACCGTTCATCGGCGGAGATCGACCCAACTTGGGAGATCTGTGCGTATTCG
GGTGCATCAAGGCAATTGAAGGGTTGGACACGCACAAGGATGTGCTGGCG
CTGGACGGGGTGGGGGTGTGGTACGAGCAGATGATGACCACGCTCGACTA
CTGAGTGATCGGGTCGACAGCCATGTGGGCGGCTCAGGGCAAAATCAAGA
AGAAGTATAACATCGAGGATGAGAGGGAGGCTCTATTCTCAGCGATAAAG
GACTGGACAGACGCGTTGGAGCATGTGAAGGGACCGTTCATCGGCGGAGA
TCGACCCAACTTGGGAGATCTGTGCGTATTCGGGTGCATCAAGGCAATTG
AAGGGTTGGACACGCACAAGGATGTGCTGGCGCTGGACGGGGTGGGGGTG
TGGTACGAGCAGATGATGACCACGCTCGACTACTGA
back to top