mRNA_H-paniculata_contig40188.10408.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40188.10408.1
Unique NamemRNA_H-paniculata_contig40188.10408.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40188.10408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40188contigH-paniculata_contig40188:73..1342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size348
Cds size348
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930230.6095223-CDS-H-paniculata_contig40188:72..1301622930230.6095223-CDS-H-paniculata_contig40188:72..130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40188 73..130 +
1691481201.387705-CDS-H-paniculata_contig40188:72..1301691481201.387705-CDS-H-paniculata_contig40188:72..130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40188 73..130 +
1622930230.6277955-CDS-H-paniculata_contig40188:1052..13421622930230.6277955-CDS-H-paniculata_contig40188:1052..1342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40188 1053..1342 +
1691481201.3964489-CDS-H-paniculata_contig40188:1052..13421691481201.3964489-CDS-H-paniculata_contig40188:1052..1342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40188 1053..1342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40188.10408.1prot_H-paniculata_contig40188.10408.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40188 73..1342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40188.10408.1

>prot_H-paniculata_contig40188.10408.1 ID=prot_H-paniculata_contig40188.10408.1|Name=mRNA_H-paniculata_contig40188.10408.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MGVALSKRRKGPPVARLWQGMVRRDTVDSLHGVSGVTRRLNCTFPGGAAS
GFQGWLPSFRMPNEAEVHSDHESNHELFFIYVFPHTVVLFRQVIVGTDIG
QSERKKVQRMQLVPP*
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mRNA from alignment at H-paniculata_contig40188:73..1342+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40188.10408.1 ID=mRNA_H-paniculata_contig40188.10408.1|Name=mRNA_H-paniculata_contig40188.10408.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1270bp|location=Sequence derived from alignment at H-paniculata_contig40188:73..1342+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGTCGCGCTAAGTAAGCGGAGGAAAGGGCCGCCTGTAGCGAGGCT
TTGGCAAGGTACGAGCCGATAAAATGTCTGTGACACTCTCGCATTCGTCT
GTGTGACTGGGTGTCGGTTTGGTAGAAGCTAGTGTTGATGCTGAGGTATG
CAGCAGGAGCAGGAACATCCGCCCTGTGGTTTGTTCGCCGCAACGAAGAG
ATAAATCTGTTGCCCAGGGTCAACTCCGCGAAATGGAGGCTCCATGAGAT
CGTTATCCGATGGGTTATTTGCTGGCATTTGTAAGTTCACCAGATTAAAG
TATTTCGCATGGCCCCTTCTGGTGAGACATGACTTATAGCCCTGCACAAG
GAGGGTAAAATGTGCCGAAGGCCTTAGACCTCGAGTATCTCTCACCTTGC
ACCCTCTGTGGTGTTCCGTTGAGTCTGCAGCCCGTGGCGCCGGGGGAAAT
CGCTTCATGTAAGTAAGTGCCTCTGCAGGTATTTTCCCCATCCCCAAGCC
CACAGCATAGGATCATTACCCTGCACAATCAGTCTCACTATCGGAATAGA
ATTATGCATAGCAGTGTCGAAAGTGACAAGTTTGTCTATGTAACTACTCC
AGCCCAGAGGCATCGTCGGTATCTTCGATGCAAGCAAATTGTCCATCATT
ACATGTCTCCTCAGTATCTCTACTACTCATTTTGAATCTGCCGTTACTTT
GCCAGGGAGGGTACATGGATCGCGTTTTAATGGTTCACCACTGCATGTCA
CTAAATTGGCTCTCACATGACGTTAAGATATTTGAAAACTTCGTCGTGGT
CTATCTTGGACGGTAATCTTTCCGCTATTCCAAATTATTGCTGCTTCGGG
TGACACATGTCAGCATCTGCGGAATATTATCTGGGCTCCTACTTGTTCTC
TTTTTGACACTTTGACTCAAGATACAGCGAATTCCCGCGTCCCAAATTTG
TGATCCCTCTTCCCATGATGGATATCGCAGGTATGGTCCGGAGGGATACC
GTAGACAGCTTGCATGGCGTTTCCGGTGTTACCCGACGGCTAAACTGTAC
ATTTCCCGGCGGCGCAGCGTCTGGGTTCCAGGGGTGGCTCCCTTCCTTTA
GGATGCCGAACGAAGCGGAGGTGCACTCCGATCATGAATCCAACCATGAA
CTTTTTTTTATTTATGTTTTTCCCCACACCGTCGTGTTGTTTCGGCAGGT
GATAGTTGGAACGGATATAGGTCAAAGCGAGCGTAAGAAAGTTCAAAGGA
TGCAGCTAGTGCCCCCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig40188:73..1342+

>mRNA_H-paniculata_contig40188.10408.1 ID=mRNA_H-paniculata_contig40188.10408.1|Name=mRNA_H-paniculata_contig40188.10408.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig40188:73..1342+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGTCGCGCTAAGTAAGCGGAGGAAAGGGCCGCCTGTAGCGAGGCT
TTGGCAAGATGGGCGTCGCGCTAAGTAAGCGGAGGAAAGGGCCGCCTGTA
GCGAGGCTTTGGCAAGGTATGGTCCGGAGGGATACCGTAGACAGCTTGCA
TGGCGTTTCCGGTGTTACCCGACGGCTAAACTGTACATTTCCCGGCGGCG
CAGCGTCTGGGTTCCAGGGGTGGCTCCCTTCCTTTAGGATGCCGAACGAA
GCGGAGGTGCACTCCGATCATGAATCCAACCATGAACTTTTTTTTATTTA
TGTTTTTCCCCACACCGTCGTGTTGTTTCGGCAGGTGATAGTTGGAACGG
ATATAGGTCAAAGCGAGCGTAAGAAAGTTCAAAGGATGCAGCTAGTGCCC
CCGTGAGTATGGTCCGGAGGGATACCGTAGACAGCTTGCATGGCGTTTCC
GGTGTTACCCGACGGCTAAACTGTACATTTCCCGGCGGCGCAGCGTCTGG
GTTCCAGGGGTGGCTCCCTTCCTTTAGGATGCCGAACGAAGCGGAGGTGC
ACTCCGATCATGAATCCAACCATGAACTTTTTTTTATTTATGTTTTTCCC
CACACCGTCGTGTTGTTTCGGCAGGTGATAGTTGGAACGGATATAGGTCA
AAGCGAGCGTAAGAAAGTTCAAAGGATGCAGCTAGTGCCCCCGTGA
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