mRNA_H-paniculata_contig401.10400.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig401.10400.1 vs. uniprot
Match: D8LQJ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQJ3_ECTSI) HSP 1 Score: 708 bits (1828), Expect = 6.150e-218 Identity = 525/1237 (42.44%), Postives = 664/1237 (53.68%), Query Frame = 1
Query: 2326 GGQAPFPLVEGQRLSQAGGQELWHLLEQSFALRGELGGSGRAGVVLIRTTAAAVASCREASRSWMISPGLLSAGPVRLVIDMIQAARGSVTVSAVLSGLLSRLRGDGPALAADAFAAIVVSEAPMLSGEEAASADDCDSNLPSQAVTWLGSALSSAWRSASRSTNSSPD--RTTAASSLANALTRRVPFETKSVLFSIVESAEIANGNNQGAKARRLHSVDSYAGGSGRGNELDSTAEDNDRPLEALIHAAQAALESPLLPLPVPSLSPSLPPEKEERGGAAGEGATVKDSQDGEAAATAGLILDSFMQTPGAVMRALRAALQRGNCTHELLAVQRALRVALCTQGSAEGDEGDATHP-LPPGLGSRRADACLLMGHLVELGVPGWVEAKAAMNPPPRPLIERLVSLIHAILVITPAPV---YRNRQRFTALRLEMWLRKFLCDSDADWCHGTGDSAGLSEPSQFSLPDVFRTARTLACAVSRHASYLIMDTSQDGTSSGXXXXXXXXXXXXXHSASRSDARNGTCLDPSQQRRLDVNGYNCDSHQRRSEGRTGFEASLNPPQRALVARLQGVHAVGALGVWVSNVVKTAARYRQWLPWQAFSDELRRLLLLRTW-KPFPMASNGG--GAVAGSDAAAVAATFAVCELLLAWD-GGQEVPAAVFDTVLCSSALKSALAPVPSGLSPPVWLDVLRCLLDVKRGRLFAWGTTPRDVGITQQDSFALAAAASVWIGGGGLRDRDMGDAGNAGEAWMRWYGAKLWPLIPTTGTWSGKWLVLSASRGKGDADEINVRAGVAGAARTLAAESWKNWGRTFLEAAWNVP------AGRAVGTTVSADLPAIVLPPFASWLRMVIRGGSQRCSVTVLEGYLRRMAREVYLPCEFGGASSEMARQWLGALIEAEAAAEAKTPVDLSTAPGLTACSGVCAMQGGASDSA----STRRAAVNAFFREELLRFGSGEVSGAPVGAALTWLWPLEAVVSACSRAGPLG-GQLSRSYFGTDVSSEG--DDGVVRLSLDDPPSALARALTAVPYDLLCGARRFDVGDGETPPA--TLRAFAMRAVDLAARALAIAPCRHWSVARRLLLGLGLLYHALATPHQEIGSGAVSSGATPSASRAAPVIAPESKADDVSEAATAQAAALKTIESLLRIAFGMGRAG-----ADEGALNGAVIGWQQRPVSLTQVRSGTSLLTTACRSLRPLETGGRGGWQDFLQALRSTGAWRTATA 5946
G QAPF + +R SQ GG+ELW LL+ + + E + +++RT AA V + R+ +S M+SPGLL + P+R+VIDM+ AA+ +T S +L+GLL DGPALAAD FAA + + A A D+ +L S +++WL AL++A S+ + R +A++L L +RVPFE K VL ++ E+AE+A R G G G LD A PL +L+ A AA +S LLPLPVPS TV + +AGL C + S G G LP G G R+ ACLL+G LVE GVPGW E KAAM PPP L LV+ ++ + V Y +RQ+ TALRLE+ L+ LCD G D + S PDVFRTARTLA A++ HAS L+ +Q + + +S +DP + G +C R EG + L P+RAL RLQ A AL WVS++VKT ++R+WLPWQ +DELR L+L KP +GG G AA AA FAV ELLLAWD GG+EV AVF +VLCS AL A+APV S PP+WL++LRCL+D + + W ++ D G QQD A+A+AA+VWIGG G R G EAW+ WYGAKL LIPT G WL+LS++ G + + VR V G ART+ + W++WGR+ L+AAWN P + R+ + PAI+LPPFASWLR+V+RGGS C +LE YLRRMA EVYLPC+FG AS+EMARQWL LIEAEA AE A C +S SA S V AFFREELLRFGSGE AP G ++WLWPLEAVV+AC G G G L+R G+ + EG D R++LD PPSALARAL+ VP+DLLCG+RRF +G G+ PPA TLRAFA R VDL ARALA PCRHWSVAR+LLLGLGLLYHALA P G S PS RA V + D ++ A AQA AL IE L+RI+ G+G G + EG G S +SG LLT+AC +LRPLETGG G DF +AL GAWR TA
Sbjct: 472 GAQAPFMVSGKRRFSQVGGKELWGLLQGACLVHEEKMPAS----LIVRTAAAVVTASRKTCQSRMVSPGLLGSSPIRVVIDMLTAAKDCLTASDLLTGLLEVPGDDGPALAADVFAAFIAASAA--GNGRTAGGDNEVGDLRSLSMSWLHGALATAVLPVRTPAGSTVELNRVMSATALTRVLIQRVPFEAKPVLLAVEEAAELATAGRGVGGCTRRSGKSRRVSGRGGGENLDGDAAS---PLASLLKLAGAAKQSRLLPLPVPS--------------------TVSPPR------SAGL---------------------------------------KCGEASGAGAVGAGIPTTLPAGSGDRKVAACLLVGFLVESGVPGWDETKAAMTPPPPQL---LVAAEESVRTEGESHVWHSYHSRQQLTALRLEVMLQSLLCDVGGSRLIGDMDV-------EKSFPDVFRTARTLARAIAHHASALVTRPNQGQQA----------WRTNDYHRFQSGGGGFEGVDPHWP---SIVGGSCS---RGGEGAGNRQLKL--PRRALAGRLQHSPAAAALTSWVSSIVKTVRQFRRWLPWQPLADELRELVLRNARRKPVRQLVSGGERNETQGRTLAAEAAVFAVSELLLAWDEGGEEVVPAVFQSVLCSKALNIAVAPVASDAPPPIWLELLRCLVDEGQCDMSGWMSSCLD-GSAQQDPLAMASAAAVWIGGDGPRAGQRSRRGTH-EAWVHWYGAKLGSLIPTGDADFGDWLILSSATGASASGGVQVR--VEGLARTIQPDEWEHWGRSPLQAAWNFPGTWAAVSQRSESQSSEGAPPAILLPPFASWLRVVLRGGST-CPKHLLEAYLRRMALEVYLPCQFGRASNEMARQWLAVLIEAEATAEGSGRKRAKMAADAVVCDWGSVTADPSSGSAVGMVSACHLVVKAFFREELLRFGSGEAPAAPNGGPMSWLWPLEAVVAACGNNGSFGRGSLARRRRGS-LGPEGIDSDASSRITLDGPPSALARALSTVPHDLLCGSRRFGMG-GQPPPALATLRAFATRVVDLTARALATPPCRHWSVARQLLLGLGLLYHALAKPVSARGGKLQKSFGAPS--RAGDV-----ELDSAAQEA-AQAVALSAIEGLVRISLGLGNLGVGERDSGEGGNRG----------SAAASKSGNPLLTSACLALRPLETGGCAGADDFARALMGAGAWRAETA 1581 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig401.10400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig401.10400.1 >prot_H-paniculata_contig401.10400.1 ID=prot_H-paniculata_contig401.10400.1|Name=mRNA_H-paniculata_contig401.10400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1880bp MEEAYRTAGVAVLRLLYNSSGDRQHLESEAVLRYVLRRRPVVLGFVVSTLback to top mRNA from alignment at H-paniculata_contig401:12784..23117- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig401.10400.1 ID=mRNA_H-paniculata_contig401.10400.1|Name=mRNA_H-paniculata_contig401.10400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10334bp|location=Sequence derived from alignment at H-paniculata_contig401:12784..23117- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig401:12784..23117- >mRNA_H-paniculata_contig401.10400.1 ID=mRNA_H-paniculata_contig401.10400.1|Name=mRNA_H-paniculata_contig401.10400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=11280bp|location=Sequence derived from alignment at H-paniculata_contig401:12784..23117- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |