mRNA_H-paniculata_contig401.10401.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig401.10401.1
Unique NamemRNA_H-paniculata_contig401.10401.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig401.10401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig401contigH-paniculata_contig401:29626..30413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size511
Cds size390
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig401.10401.1prot_H-paniculata_contig401.10401.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig401 29746..30413 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930229.1379325-UTR-H-paniculata_contig401:29625..297451622930229.1379325-UTR-H-paniculata_contig401:29625..29745Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig401 29626..29745 -
1691481200.578402-UTR-H-paniculata_contig401:29625..297451691481200.578402-UTR-H-paniculata_contig401:29625..29745Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig401 29626..29745 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930229.163171-CDS-H-paniculata_contig401:29745..299011622930229.163171-CDS-H-paniculata_contig401:29745..29901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig401 29746..29901 -
1691481200.588228-CDS-H-paniculata_contig401:29745..299011691481200.588228-CDS-H-paniculata_contig401:29745..29901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig401 29746..29901 -
1622930229.1764717-CDS-H-paniculata_contig401:30179..304131622930229.1764717-CDS-H-paniculata_contig401:30179..30413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig401 30180..30413 -
1691481200.5994632-CDS-H-paniculata_contig401:30179..304131691481200.5994632-CDS-H-paniculata_contig401:30179..30413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig401 30180..30413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig401.10401.1

>prot_H-paniculata_contig401.10401.1 ID=prot_H-paniculata_contig401.10401.1|Name=mRNA_H-paniculata_contig401.10401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
RTARSSSLPPPKAPSTTPASVPAPSAWLSSVYPELKQTVKGIDTPWHPLQ
SLCRTDRGWHQARRWRTPRALVLGCAGISTYFLQHVHLGVAAQLPVSAPG
RRVAVAIDELQTVLHRVEQHPRLFEVGLF*
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mRNA from alignment at H-paniculata_contig401:29626..30413-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig401.10401.1 ID=mRNA_H-paniculata_contig401.10401.1|Name=mRNA_H-paniculata_contig401.10401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=788bp|location=Sequence derived from alignment at H-paniculata_contig401:29626..30413- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCACGGCGCGGTCGTCATCACTGCCACCGCCGAAAGCACCGTCGACAAC
ACCAGCATCAGTACCGGCACCATCAGCCTGGCTATCATCGGTATATCCTG
AACTGAAGCAAACAGTTAAGGGCATAGATACCCCCTGGCATCCTCTGCAG
TCTCTATGTCGGACGGATCGGGGATGGCACCAAGCGCGGAGATGGCGAAC
GCCTCGAGCTTTAGTTTTAGGCTGCGCAGGCATTGCGAACAAGACACGAG
TACAGCAATCGATGGGGAGGGACAATCTGAGGAAGTCAATCACGCCGCGA
CAAGGAAGTGTATCCTTGCCAAAAATATTGGTCTCCTTAAACCGGTCCGG
ACACCGCTGCTTTGAGCGCTCCATTATGTGTCGGGTGACATTGATGTAAC
CATACCGGTTTGGGCCTCAACCTAAAGTTGTGGTTAGGGAGGAAATGGGG
ACATGTCTTCTGTCCAACTTCGAGTAATACCACAGCACAAACGATTGGGG
TCACAAGTGCAGAGTACGTACTTCTTACAGCATGTTCATCTCGGCGTCGC
CGCCCAACTTCCCGTCTCCGCCCCCGGGCGGAGGGTTGCGGTAGCTATTG
ATGAACTCCAGACAGTGCTGCACCGAGTCGAACAACACCCGCGGCTCTTC
GAAGTCGGATTGTTCTGAGTCGTCCTCGGGGCCGCGGGTAGCTTAGCGGT
GGGCGATTAGACCATCCTTCATGTGCTGGTCCATCTGGTTGCACATTACT
TTCCACACTTTCTGCAGGACCTCGCGTGAGGTACGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig401:29626..30413-

>mRNA_H-paniculata_contig401.10401.1 ID=mRNA_H-paniculata_contig401.10401.1|Name=mRNA_H-paniculata_contig401.10401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig401:29626..30413- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCACGGCGCGGTCGTCATCACTGCCACCGCCGAAAGCACCGTCGACAAC
ACCAGCATCAGTACCGGCACCATCAGCCTGGCTATCATCGGTATATCCTG
AACTGAAGCAAACAGTTAAGGGCATAGATACCCCCTGGCATCCTCTGCAG
TCTCTATGTCGGACGGATCGGGGATGGCACCAAGCGCGGAGATGGCGAAC
GCCTCGAGCTTTAGTTTTAGGCTGCGCAGGCATTCGCACGGCGCGGTCGT
CATCACTGCCACCGCCGAAAGCACCGTCGACAACACCAGCATCAGTACCG
GCACCATCAGCCTGGCTATCATCGGTATATCCTGAACTGAAGCAAACAGT
TAAGGGCATAGATACCCCCTGGCATCCTCTGCAGTCTCTATGTCGGACGG
ATCGGGGATGGCACCAAGCGCGGAGATGGCGAACGCCTCGAGCTTTAGTT
TTAGGCTGCGCAGGCATTAGTACGTACTTCTTACAGCATGTTCATCTCGG
CGTCGCCGCCCAACTTCCCGTCTCCGCCCCCGGGCGGAGGGTTGCGGTAG
CTATTGATGAACTCCAGACAGTGCTGCACCGAGTCGAACAACACCCGCGG
CTCTTCGAAGTCGGATTGTTCTGAAGTACGTACTTCTTACAGCATGTTCA
TCTCGGCGTCGCCGCCCAACTTCCCGTCTCCGCCCCCGGGCGGAGGGTTG
CGGTAGCTATTGATGAACTCCAGACAGTGCTGCACCGAGTCGAACAACAC
CCGCGGCTCTTCGAAGTCGGATTGTTCTGA
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