mRNA_H-paniculata_contig40091.10398.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40091.10398.1
Unique NamemRNA_H-paniculata_contig40091.10398.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40091.10398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40091contigH-paniculata_contig40091:837..1674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size838
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40091.10398.1prot_H-paniculata_contig40091.10398.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40091 838..1356 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930229.0567183-UTR-H-paniculata_contig40091:836..8371622930229.0567183-UTR-H-paniculata_contig40091:836..837Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40091 837..837 +
1691481200.5496273-UTR-H-paniculata_contig40091:836..8371691481200.5496273-UTR-H-paniculata_contig40091:836..837Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40091 837..837 +
1622930229.093963-UTR-H-paniculata_contig40091:1356..16741622930229.093963-UTR-H-paniculata_contig40091:1356..1674Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40091 1357..1674 +
1691481200.5687473-UTR-H-paniculata_contig40091:1356..16741691481200.5687473-UTR-H-paniculata_contig40091:1356..1674Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig40091 1357..1674 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930229.0763988-CDS-H-paniculata_contig40091:837..13561622930229.0763988-CDS-H-paniculata_contig40091:837..1356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40091 838..1356 +
1691481200.5592349-CDS-H-paniculata_contig40091:837..13561691481200.5592349-CDS-H-paniculata_contig40091:837..1356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40091 838..1356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40091.10398.1

>prot_H-paniculata_contig40091.10398.1 ID=prot_H-paniculata_contig40091.10398.1|Name=mRNA_H-paniculata_contig40091.10398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=173bp
MMSCLILVCVKTVSYKNRYNQRKISIVKTIVKGSKQQNGQVHLWCANPTG
NEHHGAAAAAATSTMRASSTGHLPTPLRTLMTQSKYYMDQIIDHPITLSV
YSPHRYNELETLLPQDKGEQASSRTSQKIQPRGGRGVNRHTFHHRHTREA
KSRLQGERNTIHAQVGTTANPN*
back to top

mRNA from alignment at H-paniculata_contig40091:837..1674+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40091.10398.1 ID=mRNA_H-paniculata_contig40091.10398.1|Name=mRNA_H-paniculata_contig40091.10398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=838bp|location=Sequence derived from alignment at H-paniculata_contig40091:837..1674+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGATGTCATGTTTGATATTAGTTTGTGTCAAAACAGTATCCTACAAAA
ATAGATATAACCAACGCAAGATATCAATCGTCAAAACAATCGTCAAAGGG
TCAAAACAACAAAACGGACAAGTGCATCTCTGGTGCGCAAATCCAACAGG
CAATGAGCACCACGGTGCTGCTGCTGCTGCTGCTACTTCGACAATGCGAG
CTTCTAGTACAGGACACCTACCCACTCCCCTTCGAACACTGATGACTCAA
TCGAAATATTATATGGATCAAATTATTGACCATCCAATAACGCTTTCGGT
TTATTCCCCGCACCGATACAACGAACTCGAAACGCTTCTTCCTCAGGATA
AGGGAGAGCAAGCTAGCTCTAGAACCTCACAAAAAATACAGCCGAGGGGG
GGAAGGGGGGTGAATCGTCATACGTTTCACCACAGACACACACGTGAGGC
GAAATCAAGGCTACAAGGGGAACGAAATACAATACATGCACAGGTGGGTA
CAACAGCGAATCCAAATTGAGGATTGGATTATGCTATCGAGGATGAAACG
CTCAAGCTTCACTTTTGCAAAATGTCGAAACGCTCAGAATATCCTCTTCG
TTGGTAGCCATCAAACGCAGCTACATTTTCTATAGATAGAGCGAAGAACG
TAAAAAAACCAAACAGAAGGAAGGATTGTTATCGGCCACCATTATCCCTT
CCCCATCTTTGCCCTCCAATTAGACAAAACAAAAAGCTACCCGGTGGCGG
CCGCGGCTACGGCGACGAAGTCTGACACGGTGTATTTTCGCGACGCCCTC
AAGGTGTTGCATGATTTTGCCATCACTTGTGGAAAAAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig40091:837..1674+

>mRNA_H-paniculata_contig40091.10398.1 ID=mRNA_H-paniculata_contig40091.10398.1|Name=mRNA_H-paniculata_contig40091.10398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at H-paniculata_contig40091:837..1674+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGTCATGTTTGATATTAGTTTGTGTCAAAACAGTATCCTACAAAAA
TAGATATAACCAACGCAAGATATCAATCGTCAAAACAATCGTCAAAGGGT
CAAAACAACAAAACGGACAAGTGCATCTCTGGTGCGCAAATCCAACAGGC
AATGAGCACCACGGTGCTGCTGCTGCTGCTGCTACTTCGACAATGCGAGC
TTCTAGTACAGGACACCTACCCACTCCCCTTCGAACACTGATGACTCAAT
CGAAATATTATATGGATCAAATTATTGACCATCCAATAACGCTTTCGGTT
TATTCCCCGCACCGATACAACGAACTCGAAACGCTTCTTCCTCAGGATAA
GGGAGAGCAAGCTAGCTCTAGAACCTCACAAAAAATACAGCCGAGGGGGG
GAAGGGGGGTGAATCGTCATACGTTTCACCACAGACACACACGTGAGGCG
AAATCAAGGCTACAAGGGGAACGAAATACAATACATGCACAGGTGGGTAC
AACAGCGAATCCAAATTGAATGATGTCATGTTTGATATTAGTTTGTGTCA
AAACAGTATCCTACAAAAATAGATATAACCAACGCAAGATATCAATCGTC
AAAACAATCGTCAAAGGGTCAAAACAACAAAACGGACAAGTGCATCTCTG
GTGCGCAAATCCAACAGGCAATGAGCACCACGGTGCTGCTGCTGCTGCTG
CTACTTCGACAATGCGAGCTTCTAGTACAGGACACCTACCCACTCCCCTT
CGAACACTGATGACTCAATCGAAATATTATATGGATCAAATTATTGACCA
TCCAATAACGCTTTCGGTTTATTCCCCGCACCGATACAACGAACTCGAAA
CGCTTCTTCCTCAGGATAAGGGAGAGCAAGCTAGCTCTAGAACCTCACAA
AAAATACAGCCGAGGGGGGGAAGGGGGGTGAATCGTCATACGTTTCACCA
CAGACACACACGTGAGGCGAAATCAAGGCTACAAGGGGAACGAAATACAA
TACATGCACAGGTGGGTACAACAGCGAATCCAAATTGA
back to top