mRNA_H-paniculata_contig4009.10396.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4009.10396.1
Unique NamemRNA_H-paniculata_contig4009.10396.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4009.10396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4009contigH-paniculata_contig4009:2864..3312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size451
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930228.850621-CDS-H-paniculata_contig4009:2863..32231622930228.850621-CDS-H-paniculata_contig4009:2863..3223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4009 2864..3223 +
1691481200.4766457-CDS-H-paniculata_contig4009:2863..32231691481200.4766457-CDS-H-paniculata_contig4009:2863..3223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4009 2864..3223 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930228.8878987-UTR-H-paniculata_contig4009:3223..33121622930228.8878987-UTR-H-paniculata_contig4009:3223..3312Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4009 3224..3312 +
1691481200.4875865-UTR-H-paniculata_contig4009:3223..33121691481200.4875865-UTR-H-paniculata_contig4009:3223..3312Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4009 3224..3312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4009.10396.1prot_H-paniculata_contig4009.10396.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4009 2864..3223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4009.10396.1

>prot_H-paniculata_contig4009.10396.1 ID=prot_H-paniculata_contig4009.10396.1|Name=mRNA_H-paniculata_contig4009.10396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
LSLFGLLACRAFTRVRCGSLGASRTQRDHSKVGRKRHVESSSSTGRTFAQ
TSSKQDIQTTLEQNVRTTARSPTQEKKNVCSSAEVCLKRFRRLGIILGRF
WSILLFLKSCHFQHKKETC*
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mRNA from alignment at H-paniculata_contig4009:2864..3312+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4009.10396.1 ID=mRNA_H-paniculata_contig4009.10396.1|Name=mRNA_H-paniculata_contig4009.10396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=449bp|location=Sequence derived from alignment at H-paniculata_contig4009:2864..3312+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTCTTTGTTTGGTTTACTTGCATGTCGCGCCTTTACCCGTGTGCGATG
CGGGAGCTTAGGCGCCTCGAGGACGCAGCGCGACCATTCGAAAGTGGGCC
GAAAACGTCATGTTGAATCCTCTTCGAGTACTGGCCGAACTTTTGCTCAA
ACCTCCTCAAAACAGGATATTCAAACCACCTTGGAACAGAATGTTCGAAC
CACCGCAAGGAGTCCAACACAAGAAAAAAAAAACGTTTGTTCGTCGGCGG
AAGTCTGCTTGAAACGATTTCGCCGACTAGGCATCATTTTGGGCCGTTTT
TGGTCAATTTTGCTCTTTCTAAAAAGTTGCCATTTCCAACACAAAAAAGA
AACGTGTTGAGATGACGTTTCCCTCAACCATTTCGTATTTTTTCTCCCTC
GGAGACATTAATAAAATTTAAAGCTCAAGTTTTAGGCTTTAGAATTATA
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Coding sequence (CDS) from alignment at H-paniculata_contig4009:2864..3312+

>mRNA_H-paniculata_contig4009.10396.1 ID=mRNA_H-paniculata_contig4009.10396.1|Name=mRNA_H-paniculata_contig4009.10396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig4009:2864..3312+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTCTTTGTTTGGTTTACTTGCATGTCGCGCCTTTACCCGTGTGCGATG
CGGGAGCTTAGGCGCCTCGAGGACGCAGCGCGACCATTCGAAAGTGGGCC
GAAAACGTCATGTTGAATCCTCTTCGAGTACTGGCCGAACTTTTGCTCAA
ACCTCCTCAAAACAGGATATTCAAACCACCTTGGAACAGAATGTTCGAAC
CACCGCAAGGAGTCCAACACAAGAAAAAAAAAACGTTTGTTCGTCGGCGG
AAGTCTGCTTGAAACGATTTCGCCGACTAGGCATCATTTTGGGCCGTTTT
TGGTCAATTTTGCTCTTTCTAAAAAGTTGCCATTTCCAACACAAAAAAGA
AACGTGTTGACTTTCTTTGTTTGGTTTACTTGCATGTCGCGCCTTTACCC
GTGTGCGATGCGGGAGCTTAGGCGCCTCGAGGACGCAGCGCGACCATTCG
AAAGTGGGCCGAAAACGTCATGTTGAATCCTCTTCGAGTACTGGCCGAAC
TTTTGCTCAAACCTCCTCAAAACAGGATATTCAAACCACCTTGGAACAGA
ATGTTCGAACCACCGCAAGGAGTCCAACACAAGAAAAAAAAAACGTTTGT
TCGTCGGCGGAAGTCTGCTTGAAACGATTTCGCCGACTAGGCATCATTTT
GGGCCGTTTTTGGTCAATTTTGCTCTTTCTAAAAAGTTGCCATTTCCAAC
ACAAAAAAGAAACGTGTTGA
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