mRNA_H-paniculata_contig4008.10393.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4008.10393.1
Unique NamemRNA_H-paniculata_contig4008.10393.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4008.10393.1 vs. uniprot
Match: D7FR47_ECTSI (DUF547 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR47_ECTSI)

HSP 1 Score: 366 bits (940), Expect = 1.190e-123
Identity = 179/251 (71.31%), Postives = 206/251 (82.07%), Query Frame = 2
Query:  242 VSRAMTSSDGPTEGAAWPPTDRLSDYVTESNLVDYSKLAKEEGTWLAPVIRQIKLTDPQQMGNAERHAFLINAYNLWTLHWVIRERRWPWWKGAVSTLAKARFFYWHRIATGAGSRNLFNFENKDIRPEVNDARVHFALNCASMSCPPLRRNLFTAADLDEELDEITSAAINGGAFVQLTCDGK-LSVNPIFKWYKEDFDKEGGMLTFIRKHWTGATPLSSDIPIDFFEYDWRTNSVDSKWADRPLGGPAP 991
            V+ +M+SS  P   AAWPP DRLS+YV ESNLVDY +LA +E  WLAPVI  IK  +P +  NAERHAFLINAYNLWTLH+V+RERR+P +KGAVS LAKARFFYWH+++TGAG  NL+NFENK IRP++NDARVHFALNCASMSCPPLRR LFT   LD ELDE+TSAAINGGA VQL  DGK LSVNPIFKWYKEDFDKEGG+  FIR  WTG+ P+  D  I+FF+YDWR+NS D+ W+DR LGGPAP
Sbjct:   21 VTPSMSSSP-PGGTAAWPPADRLSEYVKESNLVDYRRLAAQENEWLAPVISSIKSNNPTET-NAERHAFLINAYNLWTLHYVVRERRFPGFKGAVSMLAKARFFYWHKVSTGAGRWNLYNFENKVIRPDLNDARVHFALNCASMSCPPLRRKLFTGPGLDAELDEVTSAAINGGAMVQLKEDGKALSVNPIFKWYKEDFDKEGGVEVFIRSRWTGS-PIQEDPRIEFFDYDWRSNSADATWSDRALGGPAP 268          
BLAST of mRNA_H-paniculata_contig4008.10393.1 vs. uniprot
Match: A0A6H5L8M1_9PHAE (DUF547 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8M1_9PHAE)

HSP 1 Score: 352 bits (903), Expect = 7.960e-118
Identity = 174/246 (70.73%), Postives = 195/246 (79.27%), Query Frame = 2
Query:  290 WPPTDRLSDYVTESNLVDYSKLAKEEGTWLAPVIRQIKLTDPQQMGNAERHAFLINAYNLWTLHWVIRERRWPWWKGAVSTLAKARFFYWHRIATGAGSRNLFNFENKD-----------IRPEVNDARVHFALNCASMSCPPLRRNLFTAADLDEELDEITSAAINGGAFVQLTCDGK-LSVNPIFKWYKEDFDKEGGMLTFIRKHWTGATPLSSDIPIDFFEYDWRTNSVDSKWADRPLGGPAP 991
            WPP DRLS+YV ESNLVDY +LA EE  WLAPVI  IK  +P +  +AERHAFLINAYNLWTLH+VIRERR P +KGAVS LAKARFFYWH+++TGAG  NL+NFENK            IRP++NDARVHFALNCASMSCPPLRR LFT   LD ELDE+TSAAINGGA VQL  DGK LSVNPIFKWYKEDFDKEGG+  FIR  WTG+ P+  D  I+FF+YDWRTNS D+ W+DR LGGPAP
Sbjct:   39 WPPADRLSEYVKESNLVDYGRLAAEEKEWLAPVILSIKSNNPTET-DAERHAFLINAYNLWTLHYVIRERRCPGFKGAVSMLAKARFFYWHKVSTGAGRWNLYNFENKVGCVNSSLEDVVIRPDLNDARVHFALNCASMSCPPLRRKLFTGPGLDAELDEVTSAAINGGAMVQLKEDGKALSVNPIFKWYKEDFDKEGGVEAFIRSRWTGS-PIQKDPRIEFFDYDWRTNSADATWSDRALGGPAP 282          
BLAST of mRNA_H-paniculata_contig4008.10393.1 vs. uniprot
Match: A0A1Q9N9X8_HEILC (DUF547 domain-containing protein n=1 Tax=Heimdallarchaeota archaeon (strain LC_2) TaxID=1841597 RepID=A0A1Q9N9X8_HEILC)

HSP 1 Score: 157 bits (396), Expect = 2.010e-42
Identity = 85/205 (41.46%), Postives = 128/205 (62.44%), Query Frame = 2
Query:  338 VDYSKLAKEEGTWLAPVIRQIKLTDPQQMGNAERHAFLINAYNLWTLHWVIRE-RRWPWWKGAVSTLAKARFFYWHRIATGAGSRNLFNFENKDIRPEVNDARVHFALNCASMSCPPLRRNLFTAADLDEELDEITSAAINGGAFVQLTCDGKLSVNPIFKWYKEDFDKEGGMLTFIRKHWTGATPLSSDIPIDFFEYDWRTNSV 949
            V+YS L  +   WL   + ++K T+ +++  +E  AF +NAYNL TL  V +E  + P WKG +S  ++ RFF   R + G+   +L+  ENK +R +  D R+HFA+NCAS+SCP L   LF A  L+  L+++T   IN    V L  D  LS+N IFKWYK+DF + GG++TFI K+W G+  + ++I I++ +YDW  NS+
Sbjct:   20 VNYSLLKND--LWLKKNLEKMKNTNVKELTYSEEFAFWLNAYNLLTLQAVCKELEKNPNWKGNLSYFSRIRFFALRRHSIGSKKISLYTLENKILRKKFKDPRIHFAINCASISCPFLPGKLFEADSLETYLEDLTYQFINDQNSVILNED-TLSLNQIFKWYKKDFKEGGGLITFINKYWKGSK-IPNNIRIEYLKYDWHINSI 220          
BLAST of mRNA_H-paniculata_contig4008.10393.1 vs. uniprot
Match: A0A842RJ64_9ARCH (DUF547 domain-containing protein n=1 Tax=Candidatus Heimdallarchaeota archaeon TaxID=2026747 RepID=A0A842RJ64_9ARCH)

HSP 1 Score: 154 bits (390), Expect = 2.000e-41
Identity = 84/215 (39.07%), Postives = 117/215 (54.42%), Query Frame = 2
Query:  308 LSDYVTESNLVDYSKLAKEEGTWLAPVIRQIKLTDPQQMGNAERHAFLINAYNLWTLHWVIRE-RRWPWWKGAVSTLAKARFFYWHRIATGAGSRNLFNFENKDIRPEVNDARVHFALNCASMSCPPLRRNLFTAADLDEELDEITSAAINGGAFVQLT-CDGKLSVNPIFKWYKEDFDKEGGMLTFIRKHWTGATPLSSDIPIDFFEYDWRTNS 946
            LS ++ ++  VDY  L  +E  W    I +I+  D       ER AF +NAYN  T+  V+ +  + P W G  S + +  FFY+ R        +L+  ENK +R    D R+HF +NC S SCP L  N+F A  LDE LD +TS  IN    V L   D  L +N IFKWYK+DF KEGG++ FI+K+W G      ++ I + +YDW  N+
Sbjct:   13 LSHWIDKNGRVDYQSL--KEDKWFWKQIDKIETMDLTDKTEKERFAFWLNAYNFLTIKGVLDKLEKKPNWNGNTSFIGRILFFYFKRFKVANRKMSLYRLENKILRKRFRDPRIHFVINCGSSSCPFLPGNMFEANSLDETLDGLTSFFINSQTNVYLDEKDAILYLNKIFKWYKKDFKKEGGIIEFIKKYWKGPKEKLDNVKIKYKKYDWSLNN 225          
BLAST of mRNA_H-paniculata_contig4008.10393.1 vs. uniprot
Match: A0A1Q9NDR2_9ARCH (DUF547 domain-containing protein n=1 Tax=Candidatus Heimdallarchaeota archaeon LC_3 TaxID=1841598 RepID=A0A1Q9NDR2_9ARCH)

HSP 1 Score: 143 bits (361), Expect = 2.360e-37
Identity = 74/191 (38.74%), Postives = 111/191 (58.12%), Query Frame = 2
Query:  374 WLAPVIRQIKLTDPQQMGNAERHAFLINAYNLWTLHWVIRER--RWPWWKGAVSTLAKARFFYWHRIATGAGSRNLFNFENKDIRPEVNDARVHFALNCASMSCPPLRRNLFTAADLDEELDEITSAAINGGAFVQLTCDGK-LSVNPIFKWYKEDFDKEGGMLTFIRKHWTGATPLSSDIPIDFFEYDWR 937
            WL    ++I  TD   + + E+ AF INAYN+ T+ W +R++  + P WKG  S + K +FFY  +        NL+N ENK +R + N+ R+HFA+NCAS+SCPPL   + +A ++  +LD +TS  IN G  V+       L VN IFKWY++DF  +GG+L FI+ H      ++    + F  Y+W 
Sbjct:   23 WLDRKTKEIASTDINILSDNEKLAFYINAYNILTV-WAVRKKLKKNPSWKGNTSYIRKIKFFYLSKYVVAGKKINLYNLENKILRKKFNEPRIHFAINCASISCPPLPNKIISAENIHSQLDLLTSNFINDGVNVKYNKKQNILEVNSIFKWYEKDFKGQGGILLFIKNH-LSKNIINERTKLKFLPYNWN 211          
BLAST of mRNA_H-paniculata_contig4008.10393.1 vs. uniprot
Match: A0A5B9DFW7_9ARCH (DUF547 domain-containing protein n=1 Tax=Candidatus Prometheoarchaeum syntrophicum TaxID=2594042 RepID=A0A5B9DFW7_9ARCH)

HSP 1 Score: 142 bits (359), Expect = 7.450e-37
Identity = 78/218 (35.78%), Postives = 121/218 (55.50%), Query Frame = 2
Query:  305 RLSDYVTESNLVDYSKLAKEEGTWLAPVIRQIKLTDPQQMGNAERHAFLINAYNLWTLHWVIRE-RRWPWWKGAVSTLAKARFFYWHRIATGAGSRNLFNFENKDIRPEVNDARVHFALNCASMSCPPLRRNLFTAADLDEELDEITSAAINGGAFVQLTCDGK-LSVNPIFKWYKEDFDK-EGGMLTFIRKHWTGATPLSSDIPIDFFEYDWRTNSV 949
            +L  Y+ E++ VDY ++  +  TW    I++ +  D   + + +  AF +NAYNL+T+  V+   ++   WKG ++T ++ +FF   +      S +L   E K IR +  D RVHFA+NC S SCP L   LF   +L+E L+ ++   +N    V+     K LS+NPIFKWYK DF K  GG++ FI+K+W G         I +F+Y+W  NS 
Sbjct:   15 QLGRYLDENHNVDYDRIKND--TWFLDKIKEFESKDVSALSHDDEFAFWLNAYNLFTIKAVMDVLKKNKQWKGNLTTFSRMKFFVLRKYKIAGKSMSLSALETKIIRRKFKDPRVHFAINCGSSSCPVLYGRLFEGENLNELLENVSFNFVNNLTQVKFDETSKILSLNPIFKWYKNDFKKWAGGIVPFIKKYWKGPIENLDHAKIKYFQYNWTLNST 230          
BLAST of mRNA_H-paniculata_contig4008.10393.1 vs. uniprot
Match: A0A3M1VB17_9EURY (DUF547 domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A3M1VB17_9EURY)

HSP 1 Score: 128 bits (321), Expect = 2.670e-31
Identity = 79/219 (36.07%), Postives = 117/219 (53.42%), Query Frame = 2
Query:  308 LSDYVTESNLVDYSKLAKEEGTWLAPVIRQIKLTDPQQMGNAERHAFLINAYNLWTLHWVIRE-RRWPWWKGAVSTLAKARFFYWHRIATGAGSRNLFNFENKDIRPEVNDARVHFALNCASMSCPPLRRNLFTAADLDEELDEITSAAINGGAFVQLTCDGK---LSVNPIFKWYKEDFDKEGGMLTFIRKHWTGATPLSSDIPIDFFEYDWRTNSVD 952
            L  Y+++  LVDY KL ++   W   ++  I+  D   +    + AF +NAYNL  L  V++   + P WKG +S   K +FF+  R        NL   ENK IR +  D R+HFA+NC S+SCP L  + F   +LD+ LD +T+  IN     ++  DG    L V+ IFKWY +DF  + G++ FI K+     P   D  + F +YDW  NS++
Sbjct:   11 LKPYISDG-LVDYEKLKQDSTLW--DLLEAIEEMDLSNLSTKAKLAFWMNAYNLVVLKAVVKRLEKNPNWKGNLSLWDKIKFFFLERHRIAGRKMNLLTLENKIIR-KFGDPRIHFAINCGSISCPRLPHDTFNEENLDDLLDFLTTEFINSS---EVNYDGSTNTLYVSRIFKWYGKDFGGKQGIIQFISKYADRQIP--DDAEVIFKDYDWTLNSIN 220          
BLAST of mRNA_H-paniculata_contig4008.10393.1 vs. uniprot
Match: A0A8J7ZG25_9ARCH (DUF547 domain-containing protein n=1 Tax=Asgard group archaeon TaxID=2591838 RepID=A0A8J7ZG25_9ARCH)

HSP 1 Score: 123 bits (309), Expect = 1.320e-29
Identity = 76/216 (35.19%), Postives = 112/216 (51.85%), Query Frame = 2
Query:  308 LSDYVTESNLVDYSKLAKEEGTWLAPVIRQIKLTDPQQMGNAERHAFLINAYNLWTLHWV--IRERRWPWWKGAVSTLAKARFFYWHRIATGAGSRNLFNFENKDIRPEVNDARVHFALNCASMSCPPLRRNLFTAADLDEELDEITSAAINGGAFVQLTCDGK-LSVNPIFKWYKEDFDKEGGMLTFIRKHWTGATPLSSDIPIDFFEYDWRTNS 946
            L++Y+    LV+Y K+ +E+  W    I  ++    +++ + E  AF +N YNL T+  V  I E+  P WKG  S L K +FF   +         L   E+K IR +  D R+HFA+NC S SCP L   +     L++ LD +TS  IN G  +Q   + K L V+ IFKWY++DF + GG+  FI  +         D  I F +YDW  N+
Sbjct:   16 LANYIDSKGLVNYKKIKEEK--WFWEQINYLQNIQVEKLSDNELFAFWLNTYNLLTIKGVLDILEKN-PNWKGNTSLLGKLKFFILKKHKVADKKLTLNYIEHKIIRKQFRDPRIHFAINCGSTSCPFLPTKIIQPDKLEKTLDGLTSFFINSGN-IQFDHNKKILFVSKIFKWYRKDFKRVGGIKHFISIYLKAKIKDIQDYKIKFLKYDWSLNN 227          
BLAST of mRNA_H-paniculata_contig4008.10393.1 vs. uniprot
Match: UPI001F4FD533 (DUF547 domain-containing protein n=1 Tax=Pontibacter sp. E15-1 TaxID=2919918 RepID=UPI001F4FD533)

HSP 1 Score: 123 bits (309), Expect = 2.390e-29
Identity = 78/229 (34.06%), Postives = 116/229 (50.66%), Query Frame = 2
Query:  272 PTEGAAWPPTDRLSDYVTESNLVDYSKLAKEEGTWLAPVIRQIKLTDP--QQMGNAERHAFLINAYNLWTLHWVIRERRWPWWKGAVSTLAKARF-FYWHR--IATGAGSRNLFNFENKDIRPEVNDARVHFALNCASMSCPPLRRNLFTAADLDEELDEITSAAINGGAFVQLTCDGKLSVNPIFKWYKEDFDKEGGMLTFIRKHWTGATPLSSDIPIDFFEYDWRTN 943
            P    AW   + L  +V++S +VDY    +++   L   +  I  T P  Q+    E+ A+ INAYN +T+  +I        +    TL        WH+     G    +L   E+K +R E +D R+HFA+NCAS SCPPLR   F A+ LD +L E   A IN  +  ++T D K  V+ IF W+K DF K+G ++ F+ K+ T  T +     I + +YDW  N
Sbjct:   29 PPSHQAWD--ELLQQHVSKSGIVDYKGFIRDKAK-LQRYLSAISSTPPDKQKWSREEQMAYWINAYNAYTVKLIIDNYPLKSIQDLHPTLKVPGINTVWHKKFFRIGGQEASLDEIEHKILRKEFDDPRIHFAINCASFSCPPLRNEAFVASKLDRQLSEQAKAFINDPSRNKITAD-KAEVSQIFSWFKGDFTKKGSLVDFLNKYAT--TKIKPGAKISYMDYDWSLN 251          
BLAST of mRNA_H-paniculata_contig4008.10393.1 vs. uniprot
Match: UPI0004A74C4D (DUF547 domain-containing protein n=1 Tax=Desulfohalovibrio reitneri TaxID=1307759 RepID=UPI0004A74C4D)

HSP 1 Score: 122 bits (307), Expect = 5.230e-29
Identity = 76/226 (33.63%), Postives = 115/226 (50.88%), Query Frame = 2
Query:  302 DRLSDYVTESNLVDYSKLAKEEGTWLAPVIRQIKLTDPQQMGNAERHAFLINAYNLWTLHWVIRERRWPWWKGAVSTLAKARFFY---W--HRIATGAGSRNLFNFENKDIRPEVNDARVHFALNCASMSCPPLRRNLFTAADLDEELDEITSAAINGGAFVQLTCDGKLSVNPIFKWYKEDFDKEGGMLTFIRKHWTGATP-----LSSDIPIDFFEYDWRTNSV 949
            D L+++VT   LVDY  L  ++   LA  +  +  T+P  +   ER AF IN YN WTL  ++    WP     V ++     ++   W    I       +L + E+  +RPE ND R+HFA+NCASM CP L    F+A  LDE+LD  T A IN   +V+L   G L V+ IF W++ED+  E  +  F+++            + +D+ + + +YDW  N  
Sbjct:   35 DLLAEHVTADGLVDYQGLRADQAK-LANYLDVLARTEPDVLPRLERKAFFINTYNAWTLKLILDH--WP-----VDSIKDIGGWFGSPWDIEFIPLDENQVSLDHIEHDILRPEFNDPRIHFAVNCASMGCPKLMDEPFSAGRLDEQLDRRTWATINDPDYVRLE-GGTLYVSEIFDWFQEDWGGEDEVALFVKRFADKGLASRIGAVGNDLELKYIDYDWSLNDA 251          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4008.10393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR47_ECTSI1.190e-12371.31DUF547 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5L8M1_9PHAE7.960e-11870.73DUF547 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A1Q9N9X8_HEILC2.010e-4241.46DUF547 domain-containing protein n=1 Tax=Heimdalla... [more]
A0A842RJ64_9ARCH2.000e-4139.07DUF547 domain-containing protein n=1 Tax=Candidatu... [more]
A0A1Q9NDR2_9ARCH2.360e-3738.74DUF547 domain-containing protein n=1 Tax=Candidatu... [more]
A0A5B9DFW7_9ARCH7.450e-3735.78DUF547 domain-containing protein n=1 Tax=Candidatu... [more]
A0A3M1VB17_9EURY2.670e-3136.07DUF547 domain-containing protein n=1 Tax=Euryarcha... [more]
A0A8J7ZG25_9ARCH1.320e-2935.19DUF547 domain-containing protein n=1 Tax=Asgard gr... [more]
UPI001F4FD5332.390e-2934.06DUF547 domain-containing protein n=1 Tax=Pontibact... [more]
UPI0004A74C4D5.230e-2933.63DUF547 domain-containing protein n=1 Tax=Desulfoha... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4008contigH-paniculata_contig4008:2284..4928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score121.3
Seed ortholog evalue7.9e-25
Seed eggNOG ortholog1307759.JOMJ01000003_gene793
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Protein of unknown function, DUF547
EggNOG OGs1RBAE@1224,2MA07@213115,2WN5T@28221,42QZX@68525,COG0398@1,COG0398@2
Ec32 ortholog descriptionDomain of unknown function DUF547
Ec32 orthologEc-09_003520.1
COG Functional cat.S
Best tax levelDesulfovibrionales
Best eggNOG OGNA|NA|NA
Exons3
Model size1143
Cds size942
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4008.10393.1prot_H-paniculata_contig4008.10393.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4008 2433..4876 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930228.3852339-UTR-H-paniculata_contig4008:2283..24321622930228.3852339-UTR-H-paniculata_contig4008:2283..2432Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4008 2284..2432 -
1691481200.3066735-UTR-H-paniculata_contig4008:2283..24321691481200.3066735-UTR-H-paniculata_contig4008:2283..2432Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4008 2284..2432 -
1622930228.4352407-UTR-H-paniculata_contig4008:4876..49281622930228.4352407-UTR-H-paniculata_contig4008:4876..4928Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4008 4877..4928 -
1691481200.3470423-UTR-H-paniculata_contig4008:4876..49281691481200.3470423-UTR-H-paniculata_contig4008:4876..4928Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4008 4877..4928 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930228.3991115-CDS-H-paniculata_contig4008:2432..26901622930228.3991115-CDS-H-paniculata_contig4008:2432..2690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4008 2433..2690 -
1691481200.3168528-CDS-H-paniculata_contig4008:2432..26901691481200.3168528-CDS-H-paniculata_contig4008:2432..2690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4008 2433..2690 -
1622930228.410935-CDS-H-paniculata_contig4008:3137..32601622930228.410935-CDS-H-paniculata_contig4008:3137..3260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4008 3138..3260 -
1691481200.3254776-CDS-H-paniculata_contig4008:3137..32601691481200.3254776-CDS-H-paniculata_contig4008:3137..3260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4008 3138..3260 -
1622930228.422377-CDS-H-paniculata_contig4008:4315..48761622930228.422377-CDS-H-paniculata_contig4008:4315..4876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4008 4316..4876 -
1691481200.336245-CDS-H-paniculata_contig4008:4315..48761691481200.336245-CDS-H-paniculata_contig4008:4315..4876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4008 4316..4876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4008.10393.1

>prot_H-paniculata_contig4008.10393.1 ID=prot_H-paniculata_contig4008.10393.1|Name=mRNA_H-paniculata_contig4008.10393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=314bp
MNLSYSPLSIRDLFLIIFCFAAKPAQAFSTGTPALRRHCLGKSCQTTFAP
FPTSNYCSANLQKVSRAMTSSDGPTEGAAWPPTDRLSDYVTESNLVDYSK
LAKEEGTWLAPVIRQIKLTDPQQMGNAERHAFLINAYNLWTLHWVIRERR
WPWWKGAVSTLAKARFFYWHRIATGAGSRNLFNFENKDIRPEVNDARVHF
ALNCASMSCPPLRRNLFTAADLDEELDEITSAAINGGAFVQLTCDGKLSV
NPIFKWYKEDFDKEGGMLTFIRKHWTGATPLSSDIPIDFFEYDWRTNSVD
SKWADRPLGGPAP*
back to top

mRNA from alignment at H-paniculata_contig4008:2284..4928-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4008.10393.1 ID=mRNA_H-paniculata_contig4008.10393.1|Name=mRNA_H-paniculata_contig4008.10393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2645bp|location=Sequence derived from alignment at H-paniculata_contig4008:2284..4928- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCCCCCAAGCCCTGTGGATTGTGGACTAATCCGCCGAACAAAGAAAAC CCATGAACCTGTCATATAGTCCCCTCAGTATTCGAGATCTATTTCTAATT ATATTCTGTTTTGCGGCCAAACCAGCCCAAGCATTTTCAACTGGAACACC AGCACTACGCCGACACTGCCTTGGTAAGAGCTGTCAAACCACGTTCGCTC CTTTCCCTACGAGCAATTACTGCAGCGCGAATCTTCAGAAAGTGTCACGA GCGATGACATCATCAGACGGGCCGACAGAAGGGGCAGCGTGGCCACCGAC TGATCGTCTCAGTGACTATGTTACTGAATCAAATCTCGTAGATTACAGCA AGCTGGCGAAAGAGGAAGGGACTTGGCTTGCGCCAGTTATTCGACAAATC AAATTGACGGACCCTCAGCAGATGGGCAATGCCGAGCGGCATGCGTTTCT GATCAACGCATACAATCTATGGACACTTCATTGGGTCATCAGGGAGAGGA GATGGCCTTGGTGGAAGGGTGCCGTTTCTACGCTTGCGAAGGCGAGGTTC TTTTACTGGCACAGGATAGCAACTGGCGCAGGATCGAGGAACTTGTTCAA CTTCGAGAACAAGGTACAAGCTATCCTGTCTCATACACACGCATCAGTAC CTTCCGTTGCCACTGACGTTCTCGACGACCCAATATCGACCGAAATCGTG TAGATAAGCTATGCTTGAGATACACACGAGCCACGGAATGAGTGTTCATC GTGGTTGTTCGCTACGTTCTGCTGCTGTACAGTGAATTGCTATATTTTTA ATAAATAGAATGAACGCCACTCCAGTTAACACCCAACCTAGTACTGGAAC TCTACTGTTGCGTCTGTGTTATATCCTAAATAATTCATTAAATCGAAGAG CTCCAGGTAGCACGACGTTGTCATGGGTCTGCGGTGCAGCTCTGTTATAG TGTGCTTCACTTATGATTTTCTGTCTAATCTCATCTTATTAGCTACAAGT ACGACCGATCGACAGCGGCCTTGAAAGGTCGCCCGGACGACGTCGATCGG ACGGTCGGTTGAACGATCGAACCATGGGCGGGGGGCGGGGGGCAACCAGT ATGCCTTGTCGTTTGTTGCAGGGCGTTAACTATTCGTGTGAAGCGCTTCA GAACTGACTGTGCAGCGCCGGTTCAAGGGCATGTCTTTACAAGTCACGGG TTGTCGTTTCAGCGTAACCCAGTCCAGACCGGCTCCAAGCTCTGCTGCCC GATTCTCGCCGCCAATCGACTTGCCGCTCTCACCCCGCCGCTCCGTCGAC TCCAAACCACACGTGGAGCACTACCCTCCCCAGCGCGCCAGGGAGTCTCG ATGTGTGCCCGAAAACCCGTTTCTGAAAACGCCTATATCGCGAGACCTAT GCTGACATATTTCAACAGGTTACAGACTAAAATAAAATACTACTGACAAG GCTTGACTTTATTTGGACAGAGATGGATGTGTATTTATTTCTCCGTTCCT GCAGAACTTCACCTGCAGCTGCAGTTGACCTGTATGTACCGCCATTTTGT CACGTTGGGGCGTTCGTATGTAAAAAAATATTAATTTCCCTCGTGAAGGT GGCTAAGAACGAACATCCAATTTTAACCTTTGTCTGATCACGGAGCTTAA ATATCTCTTTATGCGCAGGACATACGCCCTGAGGTGAACGACGCTAGGGT TCATTTTGCCCTCAACTGCGCGTCCATGTCGTGCCCTCCGCTCCGGAGAA ATCTTTTCACCGCTGCGGATCTAGACGAAGAACTCGATGAGGTACAATTA GCAGGCATTTTTTTTTCGCGCATTGGTTATTACGGAAGTGCTGCTCATCG TTTTATTTTTTTTATCACTTTTGCTGCAAAACGATAGGCGGAGGCACAAC TTTTATTGTATATGCTCACCTTCTTATCACGTTTTCTAGCGTCATAGCTA ATATTCAGCTGAACCCTTTTTGAGTTGATATCGATGACTGGCAATTAGAA CCGAGTGCCATCTTGAGAAAAGTCCAACGGGACGGAACTTGCTTTGTATC TTCTGTACTACATCTCCAAAATTCTGCAATACACGTTACAAGTCTGACGT ATATGGGGGCATTACAGTTGGCCATCGCCCATGTATAAAGTAGTCGACAG TTAGATCTCACTATAGCGCCAACAGTGGCATGCACATACTCGCACCTTGC GAAAGTTATCTAAATATGCTGTATGCTTTGCGCTACAGATCACATCAGCC GCTATCAACGGGGGAGCATTCGTGCAGCTCACCTGCGACGGAAAGCTTAG CGTCAATCCCATCTTCAAATGGTATAAAGAAGATTTCGACAAGGAAGGAG GGATGCTTACCTTTATTCGTAAGCACTGGACAGGAGCTACACCGCTGTCA TCTGATATTCCAATCGACTTCTTCGAGTACGATTGGAGGACGAACAGCGT CGATTCTAAATGGGCAGATCGGCCCCTTGGAGGACCTGCACCCTAGGCTC GACCAGGCTGCTGGGAACGGAGCATATATTTTTTTTGACCCCCGGAAGGC TGAGGGAAAAACCTGCACCGATGCTTCCATACTCAAGTATTTTACCAAAG TATATCTACATTTCCTTCAACAGAACAGAGTTATTTATTCCTCTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4008:2284..4928-

>mRNA_H-paniculata_contig4008.10393.1 ID=mRNA_H-paniculata_contig4008.10393.1|Name=mRNA_H-paniculata_contig4008.10393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1884bp|location=Sequence derived from alignment at H-paniculata_contig4008:2284..4928- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACCTGTCATATAGTCCCCTCAGTATTCGAGATCTATTTCTAATTAT
ATTCTGTTTTGCGGCCAAACCAGCCCAAGCATTTTCAACTGGAACACCAG
CACTACGCCGACACTGCCTTGGTAAGAGCTGTCAAACCACGTTCGCTCCT
TTCCCTACGAGCAATTACTGCAGCGCGAATCTTCAGAAAGTGTCACGAGC
GATGACATCATCAGACGGGCCGACAGAAGGGGCAGCGTGGCCACCGACTG
ATCGTCTCAGTGACTATGTTACTGAATCAAATCTCGTAGATTACAGCAAG
CTGGCGAAAGAGGAAGGGACTTGGCTTGCGCCAGTTATTCGACAAATCAA
ATTGACGGACCCTCAGCAGATGGGCAATGCCGAGCGGCATGCGTTTCTGA
TCAACGCATACAATCTATGGACACTTCATTGGGTCATCAGGGAGAGGAGA
TGGCCTTGGTGGAAGGGTGCCGTTTCTACGCTTGCGAAGGCGAGGTTCTT
TTACTGGCACAGGATAGCAACTGGCGCAGGATCGAGGAACTTGTTCAACT
TCGAGAACAAGATGAACCTGTCATATAGTCCCCTCAGTATTCGAGATCTA
TTTCTAATTATATTCTGTTTTGCGGCCAAACCAGCCCAAGCATTTTCAAC
TGGAACACCAGCACTACGCCGACACTGCCTTGGTAAGAGCTGTCAAACCA
CGTTCGCTCCTTTCCCTACGAGCAATTACTGCAGCGCGAATCTTCAGAAA
GTGTCACGAGCGATGACATCATCAGACGGGCCGACAGAAGGGGCAGCGTG
GCCACCGACTGATCGTCTCAGTGACTATGTTACTGAATCAAATCTCGTAG
ATTACAGCAAGCTGGCGAAAGAGGAAGGGACTTGGCTTGCGCCAGTTATT
CGACAAATCAAATTGACGGACCCTCAGCAGATGGGCAATGCCGAGCGGCA
TGCGTTTCTGATCAACGCATACAATCTATGGACACTTCATTGGGTCATCA
GGGAGAGGAGATGGCCTTGGTGGAAGGGTGCCGTTTCTACGCTTGCGAAG
GCGAGGTTCTTTTACTGGCACAGGATAGCAACTGGCGCAGGATCGAGGAA
CTTGTTCAACTTCGAGAACAAGGACATACGCCCTGAGGTGAACGACGCTA
GGGTTCATTTTGCCCTCAACTGCGCGTCCATGTCGTGCCCTCCGCTCCGG
AGAAATCTTTTCACCGCTGCGGATCTAGACGAAGAACTCGATGAGGACAT
ACGCCCTGAGGTGAACGACGCTAGGGTTCATTTTGCCCTCAACTGCGCGT
CCATGTCGTGCCCTCCGCTCCGGAGAAATCTTTTCACCGCTGCGGATCTA
GACGAAGAACTCGATGAGATCACATCAGCCGCTATCAACGGGGGAGCATT
CGTGCAGCTCACCTGCGACGGAAAGCTTAGCGTCAATCCCATCTTCAAAT
GGTATAAAGAAGATTTCGACAAGGAAGGAGGGATGCTTACCTTTATTCGT
AAGCACTGGACAGGAGCTACACCGCTGTCATCTGATATTCCAATCGACTT
CTTCGAGTACGATTGGAGGACGAACAGCGTCGATTCTAAATGGGCAGATC
GGCCCCTTGGAGGACCTGCACCCTAGATCACATCAGCCGCTATCAACGGG
GGAGCATTCGTGCAGCTCACCTGCGACGGAAAGCTTAGCGTCAATCCCAT
CTTCAAATGGTATAAAGAAGATTTCGACAAGGAAGGAGGGATGCTTACCT
TTATTCGTAAGCACTGGACAGGAGCTACACCGCTGTCATCTGATATTCCA
ATCGACTTCTTCGAGTACGATTGGAGGACGAACAGCGTCGATTCTAAATG
GGCAGATCGGCCCCTTGGAGGACCTGCACCCTAG
back to top