mRNA_H-paniculata_contig40030.10381.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40030.10381.1
Unique NamemRNA_H-paniculata_contig40030.10381.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig40030.10381.1 vs. uniprot
Match: D7G9I1_ECTSI (Cyclopropane-fatty-acyl-phospholipid synthase/ oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I1_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 5.660e-23
Identity = 49/71 (69.01%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   52 QLQNLAAGSKQIFVSLNPSPLPEASLVHKKMIYEHPQFSPEAEMGQRLLSGFAGRRGLWFCGAWRGYGFHE 264
            +LQNL   S Q+FVSLNP   PE  LVH+ + Y HPQFSP AE GQRLLS   G+RGLWFCGAWRGYGFHE
Sbjct:  448 KLQNLDC-STQVFVSLNPHTPPEPGLVHETLRYRHPQFSPRAEGGQRLLSSVNGKRGLWFCGAWRGYGFHE 517          
BLAST of mRNA_H-paniculata_contig40030.10381.1 vs. uniprot
Match: A0A448ZB87_9STRA (Amino_oxidase domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZB87_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.230e-18
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 1
Query:   52 QLQNLAAGSKQIFVSLNPSPLPEASLVHKKMIYEHPQFSPEAEMGQRLLS-GFAGRRGLWFCGAWRGYGFHE 264
            +LQNL AG K IFVSLNP   P   +++KK I  HPQF+  + + ++ LS  F GR GLWFCGAW+GYGFHE
Sbjct:  433 KLQNLDAGGKDIFVSLNPHEAPAEEMIYKKTILAHPQFTAASTVARKKLSDSFQGRNGLWFCGAWQGYGFHE 504          
BLAST of mRNA_H-paniculata_contig40030.10381.1 vs. uniprot
Match: A0A835ZDJ8_9STRA (Mycolic acid cyclopropane synthetase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDJ8_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.710e-16
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   52 QLQNLAAGSKQIFVSLNPSPLPEASLVHKKMIYEHPQFSPEAEMGQRLLSGFAGRRGLWFCGAWRGYGFHE 264
            +LQNL      +FVSLNPS  P+ +  H+ +   HPQF+PE E  QR ++   GRRGLWFCGAW GYGFHE
Sbjct:  128 KLQNLDCRDS-VFVSLNPSAPPDPAKTHRVIETTHPQFTPEGERAQRKVAALNGRRGLWFCGAWMGYGFHE 197          
BLAST of mRNA_H-paniculata_contig40030.10381.1 vs. uniprot
Match: A0A7S2EJI1_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EJI1_TRICV)

HSP 1 Score: 73.9 bits (180), Expect = 4.570e-15
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 1
Query:   52 QLQNLAAGSKQIFVSLNPSPLPEASLVHKKMIYEHPQFSPEAEMGQRLLSGF-AGRRGLWFCGAWRGYGFHE 264
            +LQNL      +FVSLNP   P+ S VH++ +  HPQF+P  +  +R ++    G+ GLWFCGAW GYGFHE
Sbjct:   22 RLQNLQCNG-DVFVSLNPHSPPDPSKVHRRTVMAHPQFNPGTQRARRAITEVHQGKDGLWFCGAWGGYGFHE 92          
BLAST of mRNA_H-paniculata_contig40030.10381.1 vs. uniprot
Match: B7G7I7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G7I7_PHATC)

HSP 1 Score: 77.8 bits (190), Expect = 9.940e-15
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 1
Query:   52 QLQNLAAGSKQIFVSLNPSPLPEASLVHKKMIYEHPQFSPEAEMGQRLLSGFAGRRGLWFCGAWRGYGFHE 264
            +LQNL    + IFVSLNP   PE +L H+++I  HPQF+ +    +  L    G+ GLWFCGAW GYGFHE
Sbjct:  368 RLQNLET-DRDIFVSLNPHHAPEPALTHQRVILAHPQFNSKTLQAREKLGALQGKDGLWFCGAWSGYGFHE 437          
BLAST of mRNA_H-paniculata_contig40030.10381.1 vs. uniprot
Match: A0A7S2REM9_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REM9_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.360e-14
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 1
Query:   55 LQNLAAGSKQIFVSLNPSPLPEASLVHKKMIYEHPQFSPEAEMGQRLLSGFAGRRGLWFCGAWRGYGFHE 264
            LQ+L  G+  +F+SLNP   P   L ++KM Y HPQ+SP A   Q  L+   G +GLWFCGA+ GYGFHE
Sbjct:  358 LQHLPEGTPDVFLSLNPPFPPRPELTYRKMAYSHPQYSPGAVRAQVELTRLQGDKGLWFCGAYLGYGFHE 427          
BLAST of mRNA_H-paniculata_contig40030.10381.1 vs. uniprot
Match: A0A1Z9LS21_9PROT (Amino_oxidase domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TMED199 TaxID=1986632 RepID=A0A1Z9LS21_9PROT)

HSP 1 Score: 76.6 bits (187), Expect = 2.180e-14
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 WSYPKNIPSLSCPFLFV-QLQNLAAGSKQIFVSLNPSPLPEASLVHKKMIYEHPQFSPEAEMGQRLLSGFAGRRGLWFCGAWRGYGFHE 264
            W+Y  N    S    ++ QLQ+L   S  +FVSLNP  +P  SL+HKK++YEHP F+      Q+L++   G+  +++ GAW GYGFHE
Sbjct:  310 WNYLSNKNKXSSTTYWMNQLQDLNT-SLNVFVSLNPFKIPNKSLIHKKIVYEHPIFNNSTNEAQKLINKIQGKDNIYYAGAWLGYGFHE 397          
BLAST of mRNA_H-paniculata_contig40030.10381.1 vs. uniprot
Match: UPI001F38F997 (FAD-dependent oxidoreductase n=2 Tax=Polynucleobacter TaxID=44013 RepID=UPI001F38F997)

HSP 1 Score: 76.6 bits (187), Expect = 2.340e-14
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    4 SYPKN-IPSLSCPFLFVQLQNLAAG--SKQIFVSLNPSPLPEASLVHKKMIYEHPQFSPEAEMGQRLLSGFAGRRGLWFCGAWRGYGFHE 264
            +Y KN I S+S  +L  +LQ L A    + I VSLNP   P+  LV K++ Y HP F  +A   Q+ LS   G+ G+WFCGAW GYGFHE
Sbjct:  343 TYTKNQIQSVSVDYLINKLQPLPAALHEEPIIVSLNPLIDPKPELVFKEISYSHPIFDAKAISAQKNLSLIQGKAGIWFCGAWTGYGFHE 432          
BLAST of mRNA_H-paniculata_contig40030.10381.1 vs. uniprot
Match: A0A7S0UF45_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UF45_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.410e-14
Identity = 42/76 (55.26%), Postives = 51/76 (67.11%), Query Frame = 1
Query:   52 QLQNLAAGS---KQIFVSLNPSPLPEASLVHKKMIYEHPQFSPEAEMGQR--LLSGFAGRRGLWFCGAWRGYGFHE 264
            +LQNL   +   K+IFVSLNP   PE SL++KK+   HPQF+  A M  R  L +   GR GLWFCGAW+GYGFHE
Sbjct:  100 RLQNLDVATEAGKEIFVSLNPHESPEESLIYKKVNLAHPQFTL-ATMNARKSLQANHQGRNGLWFCGAWQGYGFHE 174          
BLAST of mRNA_H-paniculata_contig40030.10381.1 vs. uniprot
Match: A0A7S2SHK6_9STRA (Hypothetical protein n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SHK6_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.190e-13
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   52 QLQNLAAGSKQIFVSLNPSPLPEASLVHKKMIYEHPQFSPEAEMGQRLLSG-FAGRRGLWFCGAWRGYGFHE 264
            +LQNL   S  IFVSLNP   P+  L++ K    HPQF+P+  + ++ +S  + G+ GLWFCGAW+GYGFHE
Sbjct:  161 RLQNLDT-STDIFVSLNPHKKPDLKLIYHKQHMSHPQFTPQTLLARKEISEKYQGKDGLWFCGAWQGYGFHE 231          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40030.10381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9I1_ECTSI5.660e-2369.01Cyclopropane-fatty-acyl-phospholipid synthase/ oxi... [more]
A0A448ZB87_9STRA2.230e-1856.94Amino_oxidase domain-containing protein n=1 Tax=Ps... [more]
A0A835ZDJ8_9STRA1.710e-1654.93Mycolic acid cyclopropane synthetase-domain-contai... [more]
A0A7S2EJI1_TRICV4.570e-1548.61Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
B7G7I7_PHATC9.940e-1550.70Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2REM9_9STRA1.360e-1451.43Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A1Z9LS21_9PROT2.180e-1442.70Amino_oxidase domain-containing protein n=1 Tax=Al... [more]
UPI001F38F9972.340e-1447.78FAD-dependent oxidoreductase n=2 Tax=Polynucleobac... [more]
A0A7S0UF45_9STRA3.410e-1455.26Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S2SHK6_9STRA1.190e-1350.00Hypothetical protein n=2 Tax=Eucampia antarctica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40030contigH-paniculata_contig40030:192..467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue1.9e-19
Seed eggNOG ortholog2880.D7G9I1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.lipid biosynthetic process
EggNOG OGs2QSMW@2759,COG2230@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930226.922388-CDS-H-paniculata_contig40030:191..4671622930226.922388-CDS-H-paniculata_contig40030:191..467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40030 192..467 +
1691481199.6421795-CDS-H-paniculata_contig40030:191..4671691481199.6421795-CDS-H-paniculata_contig40030:191..467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40030 192..467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40030.10381.1prot_H-paniculata_contig40030.10381.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40030 192..467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40030.10381.1

>prot_H-paniculata_contig40030.10381.1 ID=prot_H-paniculata_contig40030.10381.1|Name=mRNA_H-paniculata_contig40030.10381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
WSYPKNIPSLSCPFLFVQLQNLAAGSKQIFVSLNPSPLPEASLVHKKMIY
EHPQFSPEAEMGQRLLSGFAGRRGLWFCGAWRGYGFHEVYV*
back to top

mRNA from alignment at H-paniculata_contig40030:192..467+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40030.10381.1 ID=mRNA_H-paniculata_contig40030.10381.1|Name=mRNA_H-paniculata_contig40030.10381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at H-paniculata_contig40030:192..467+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTCATATCCCAAAAATATTCCATCACTATCATGTCCGTTTCTATTCGT ACAGTTACAAAATCTGGCCGCCGGGTCGAAGCAGATATTCGTCTCACTCA ACCCCAGCCCTCTGCCGGAAGCAAGCTTGGTGCACAAGAAAATGATTTAT GAGCACCCTCAGTTTTCCCCCGAGGCGGAGATGGGACAGCGCCTGCTATC TGGCTTTGCCGGCCGCCGGGGTTTGTGGTTCTGCGGTGCTTGGAGGGGGT ACGGCTTTCACGAGGTATATGTGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig40030:192..467+

>mRNA_H-paniculata_contig40030.10381.1 ID=mRNA_H-paniculata_contig40030.10381.1|Name=mRNA_H-paniculata_contig40030.10381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig40030:192..467+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTCATATCCCAAAAATATTCCATCACTATCATGTCCGTTTCTATTCGT
ACAGTTACAAAATCTGGCCGCCGGGTCGAAGCAGATATTCGTCTCACTCA
ACCCCAGCCCTCTGCCGGAAGCAAGCTTGGTGCACAAGAAAATGATTTAT
GAGCACCCTCAGTTTTCCCCCGAGGCGGAGATGGGACAGCGCCTGCTATC
TGGCTTTGCCGGCCGCCGGGGTTTGTGGTTCTGCGGTGCTTGGAGGGGGT
ACGGCTTTCACGAGGTATATGTGTAATGGTCATATCCCAAAAATATTCCA
TCACTATCATGTCCGTTTCTATTCGTACAGTTACAAAATCTGGCCGCCGG
GTCGAAGCAGATATTCGTCTCACTCAACCCCAGCCCTCTGCCGGAAGCAA
GCTTGGTGCACAAGAAAATGATTTATGAGCACCCTCAGTTTTCCCCCGAG
GCGGAGATGGGACAGCGCCTGCTATCTGGCTTTGCCGGCCGCCGGGGTTT
GTGGTTCTGCGGTGCTTGGAGGGGGTACGGCTTTCACGAGGTATATGTGT
AA
back to top