mRNA_H-paniculata_contig4001.10374.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4001.10374.1
Unique NamemRNA_H-paniculata_contig4001.10374.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4001.10374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4001contigH-paniculata_contig4001:9977..11999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size401
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930225.9813213-CDS-H-paniculata_contig4001:9978..101581622930225.9813213-CDS-H-paniculata_contig4001:9978..10158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4001 9979..10158 -
1691481199.1859412-CDS-H-paniculata_contig4001:9978..101581691481199.1859412-CDS-H-paniculata_contig4001:9978..10158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4001 9979..10158 -
1622930225.9997287-CDS-H-paniculata_contig4001:11780..119991622930225.9997287-CDS-H-paniculata_contig4001:11780..11999Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4001 11781..11999 -
1691481199.1963344-CDS-H-paniculata_contig4001:11780..119991691481199.1963344-CDS-H-paniculata_contig4001:11780..11999Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4001 11781..11999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4001.10374.1prot_H-paniculata_contig4001.10374.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4001 9979..11999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4001.10374.1

>prot_H-paniculata_contig4001.10374.1 ID=prot_H-paniculata_contig4001.10374.1|Name=mRNA_H-paniculata_contig4001.10374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
RKEKRRAEHARAKKEASRLRLEKIKREEAAAREARTSAATTLQAWGRGLR
TRSAVSAVLAARGLPPLGTRLPEDTRESSQLPPLSCHPHLKEAHAGLATI
TPRTSVSTMRLSEDSPDSIGRGFSFGAGGSAKS
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mRNA from alignment at H-paniculata_contig4001:9977..11999-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4001.10374.1 ID=mRNA_H-paniculata_contig4001.10374.1|Name=mRNA_H-paniculata_contig4001.10374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2023bp|location=Sequence derived from alignment at H-paniculata_contig4001:9977..11999- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAAAGAGAAGAGACGCGCCGAACACGCACGAGCAAAGAAGGAGGCGAG
CAGATTACGCCTCGAAAAGATTAAGAGAGAGGAGGCCGCGGCAAGGGAGG
CTCGTACTTCGGCAGCGACAACGTTGCAAGCTTGGGGTAGAGGATTGCGG
ACGAGGTCTGCTGTTTCTGCAGTTTTAGCGGCGAGAGGTTTGCCTCCCCT
TGGGACGCGTTTGCCAGAGGTAAGCAAGGCAAGACCTTTTTCCCATCGTG
GTTTCATTCCGAAGAATGTGCGGGCGTCACCATCTTTTTCAGCCCTTGAT
AGTACAATCGCTCAAACCTGCGGTTAGAGGATGGGATTGCTCACAGGAAC
AATCGGGCATACAAAAGTACCCACTGCACTTCATCCAATCATCTGGGAGC
AGGTATACTGCGCATTGAAATAAGAACAAGTCTCAGGGCCAAACCCCACG
GTTGGTCCAGTGGCATCAGCAGAAAACTAGGTGTAGGCTGAGCTAATAGG
CTAATGGCTCTGACCCCCTTATTTACCTGTAGGCAGGCCCGTAGTGTACT
TACGCCATCCTGCCCCTCCCCCTCGTGAACACTAACGTGACCACGTTCGT
GCCTTGAGTACTCGTAAATTTGGAAAAAATTGTAGGGGACGCGGTGATGC
GGTGTAACATGATCTTGAACCGATATTGGCAATTGGCGCAAAATTTGGGT
CGTTTGGGCAAGCACTTTTTTTTTCTTTTTTTTCTTTATTTCGAGGTGGG
AGGACCATACCTCGTAGCGACCAATGTTCATTTGGTGGTGATCATACATT
TCCTGCATCTTGACGCGTGGCCAGCAATGCGAAACTGGCCAAATGAGAGT
GACCCAGGCGAGAGGTCTCGAAAACTTTCAAGGATTAGGATAGATGAGAT
CATTCACAGCTCACCTTGCACCGAAACATCTTGACATGGATGCAATTCGC
CTGAGTTTCAGAATGAGCGGACACAAAGAATAAAGTTTCCATCCCTGTCT
ATTCGATATACGAGTATTATTAGCGGTCGTGGATGGTTCGGGGCACATAA
AATACACGACCTTATTCTGAAATTCAGGCGATTTTTTTTTTTTTTTTTTA
ATTTTCGTACCGAATATGCCAATTATTCGTAATTGTCCGAGGGGGGTGAA
ATTTTCGATTATACAAATCTTAAATTGAAAAGATTAATTTTGTTACTGGT
GAAATTTGTCAAGTGCGAGTGCGACACGTGAAAACACGTTGGATTTTCTT
TCAATGTACAAGAAAAACGTCACGTACGTCAACAATAAGTTTTGTGGGTT
GTATTTTATTGACTAAGAACGGGTACAATTTTGGTGGATACTAGTCACGA
CACCTCGGAATAATTATGTGAGATATTGGGGCCGTCCGAAGACTTGGGAA
ATGTTTATACCGATATAGCTGTATTGTTGTCGTTTTTTTTCTTTTTTTTT
GTCCTCAAGGGAGAGGAAACATTTTGCCAACACTTACCCCGAGATCGGGT
TCGTGTGTCAGTTACCCGTAGGCCCGACTAGTTCAGCTGGCGGCGGCCAT
GTGAGATAGGCACCCCGAGCGTTCGCGCGATTTTGCGCAGGGTAGAGTAG
GACTCTCGACCACTAGAAAAAAAACCTCCTTTGTTGATTCCCTCAATCAA
ACTGGTGCAGTATACGCATCGCTCTGATGGGATGAGCTTTCGGCCCTAGA
TTGTTACCGTAGACCTTCAAGGTTCTTTATTCTCAACTGCTTTCTCCACT
CATAGGTATTTTTGGCACAAACAAATGCTGCTGCTGTGTCCCCCGTCTGC
ATTTATTTGGCGCCATGTTTCTTTGTTATCTTCTTTATCAGGATACCCGA
GAGTCCTCGCAGCTTCCACCTCTCAGCTGCCACCCACATCTTAAGGAAGC
TCATGCCGGTTTGGCCACAATTACCCCACGGACGTCCGTCTCAACCATGC
GACTGTCGGAGGATTCACCGGACTCTATCGGGAGGGGGTTTTCGTTCGGG
GCCGGGGGTAGTGCTAAGAGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4001:9977..11999-

>mRNA_H-paniculata_contig4001.10374.1 ID=mRNA_H-paniculata_contig4001.10374.1|Name=mRNA_H-paniculata_contig4001.10374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig4001:9977..11999- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAAAGAGAAGAGACGCGCCGAACACGCACGAGCAAAGAAGGAGGCGAG
CAGATTACGCCTCGAAAAGATTAAGAGAGAGGAGGCCGCGGCAAGGGAGG
CTCGTACTTCGGCAGCGACAACGTTGCAAGCTTGGGGTAGAGGATTGCGG
ACGAGGTCTGCTGTTTCTGCAGTTTTAGCGGCGAGAGGTTTGCCTCCCCT
TGGGACGCGTTTGCCAGAGAGAAAAGAGAAGAGACGCGCCGAACACGCAC
GAGCAAAGAAGGAGGCGAGCAGATTACGCCTCGAAAAGATTAAGAGAGAG
GAGGCCGCGGCAAGGGAGGCTCGTACTTCGGCAGCGACAACGTTGCAAGC
TTGGGGTAGAGGATTGCGGACGAGGTCTGCTGTTTCTGCAGTTTTAGCGG
CGAGAGGTTTGCCTCCCCTTGGGACGCGTTTGCCAGAGGATACCCGAGAG
TCCTCGCAGCTTCCACCTCTCAGCTGCCACCCACATCTTAAGGAAGCTCA
TGCCGGTTTGGCCACAATTACCCCACGGACGTCCGTCTCAACCATGCGAC
TGTCGGAGGATTCACCGGACTCTATCGGGAGGGGGTTTTCGTTCGGGGCC
GGGGGTAGTGCTAAGAGCGATACCCGAGAGTCCTCGCAGCTTCCACCTCT
CAGCTGCCACCCACATCTTAAGGAAGCTCATGCCGGTTTGGCCACAATTA
CCCCACGGACGTCCGTCTCAACCATGCGACTGTCGGAGGATTCACCGGAC
TCTATCGGGAGGGGGTTTTCGTTCGGGGCCGGGGGTAGTGCTAAGAGC
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