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Homology
BLAST of mRNA_H-paniculata_contig4.10359.1 vs. uniprot
Match: D8LRM5_ECTSI (DUF3598 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRM5_ECTSI) HSP 1 Score: 306 bits (783), Expect = 6.570e-98 Identity = 165/345 (47.83%), Postives = 226/345 (65.51%), Query Frame = 1
Query: 133 MSFCVPFAPGPVQPARQREWESFVASNAGVWRGIWTTYDDTGAQQGEPDRMDTNLGLSSDGERIKHVNTLFVGSVDSDCSTCFDSVETKNIQVGEYTKETFRQRAYGSGYINGPGVTPRGDMSTEVGFR-HGNSRVRCIVVHRLPAEQLAGIEPPSHLALERIVVVKESIASGELAGETPSVDLLWSHLDEPAWLGLWRGSAGILENDSSSSGSSGSGPVRRGVVWRQENVSPTHLRACRCSGAGESDD--HVSLEVGGRIRLKAPKIIRAGEPADITIGWAPPPRSESNT-QRILQGKVQVEALSRVVDTEYVSEGSQRIKISPPQLFRFVVEDLERVASAGLR 1155
++F +P +P R+W + A + G WRG+WTTYD G ++G+PDRMDT + LS+DG+ + HVNTLFVGSV SDCSTC DSVET++I G+YT ETFR RA Y+ GPGVT GDM+TE+GFR + RVR +V HR Q G+EPP LAL+RIVVV+E++A+ PS WS D P+WLGLWRG +L+ G G G+ W+++ + PTHLR CRCSGA DD H S E+ G I L+APKI+ AG+PA++++ A +S++ T RI+Q KV++EALSRVV+T + G + ++++PP+L + V L V SAGL+
Sbjct: 20 LAFSLPLSPSG------RDWNDYTAQHVGKWRGLWTTYDSAGVERGDPDRMDTTISLSADGKTVAHVNTLFVGSVGSDCSTCHDSVETRDIPAGQYTTETFRHRASSGCYLFGPGVTRGGDMTTELGFRLDEDRRVRVLVSHR---PQANGVEPPLQLALQRIVVVRETLAAQRQT--PPSASSCWS-FDRPSWLGLWRGHEMVLDG--------GGGDADDGLSWKEKALPPTHLRRCRCSGAAIEDDDSHASFELDGGILLEAPKIVDAGKPAELSVRCAIGRKSKAATPNRIVQAKVRLEALSRVVETVRSAAG-ENVRVAPPKLLQLSVHSLTPVESAGLK 343
BLAST of mRNA_H-paniculata_contig4.10359.1 vs. uniprot
Match: A0A7S2B064_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B064_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 5.020e-16 Identity = 94/368 (25.54%), Postives = 156/368 (42.39%), Query Frame = 1
Query: 121 PQLSMSFCVPFAPGPVQPARQREWESFVASNAGVWRGIWTTYDDTGAQQGEPDRM-DTNLGLSSDGERIKHVNTLFVGSVDSDCSTCFDSVETKNIQVGEY-TKETFRQRAYGSGYINGPGVTPRGDMSTEVGFRHGNSRVRCIVVHRLPA---EQLAGIEPPSHLALERIVVVKESI--------------ASGELAGETPSVDLLWSHLDEPAWLGL----WRGSAGILENDS-SSSGSSGSGPVRRGVVWRQENVSPTHLRACRCSGAGESDDHVSLEVGGRIRLKAPKII------RAGEPADITIGWAPPPRSESNTQRILQGKVQVEALSRVVDTEYVSEGSQRIKISPPQLFRFVVEDLER 1134
P +S CV P A + +W+ F ++ G W G+W T++ G G + + D +L D + SV SDC TC DS + + + +G+ T R G +NGP V G +STE+G R G+SRVR H +PA + AGI PP L L R+V+ +E++ + + AG +VDL W W L W G+ ++ + S + ++ + +W + ++R G+G S H+ L G + ++ P+ I G A + W ++ R G +E D + +S +++ PP + F ++LER
Sbjct: 27 PLRKVSRCVTVVPVDNLDA-EGQWDLFRTNHVGRWEGVWETFNPIGDNIGTVEAIFDVSL---EDDVTATMSQAIRENSVSSDCETCHDSTQERWLPLGQVGTGALRRMTCSGPAMVNGPTVLRSGALSTELGLRFGDSRVRVTFQH-IPAWEGDSTAGIGPPDCLDLFRVVMRRETLRDAPPTRAQAEADRSEDKYAGGKGAVDL-WRGFPPFQWAQLPTEPWSGTHHVVSSQQFSDAPTTVNEDDAASWLWHE------YIRGDDGDGSGTSQWHLRLP--GGVLIQCPRRIPRQPEEEGGASAMFKLAWL---AESTSLVRASVGVCALEEEDSGGDDDMLS-----VRLKPPSIVSFSADELER 372
BLAST of mRNA_H-paniculata_contig4.10359.1 vs. uniprot
Match: A0A7S0HW35_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HW35_9EUKA) HSP 1 Score: 57.8 bits (138), Expect = 8.130e-7 Identity = 35/71 (49.30%), Postives = 40/71 (56.34%), Query Frame = 1
Query: 334 NTL-FVG-SVDSDCSTCFDSVETKNIQVGEYTKETFRQRAYGSGYINGPGVTPRGDMSTEVGFRHGNSRVR 540
NTL FV SV SDC TCFDS ETK + G ++ +T G G GP V G MS E RHG+ RVR
Sbjct: 31 NTLIFVSQSVRSDCETCFDSEETKEMPAGSFSADTLPYYICGQGSALGPRVLRSGAMSFEACVRHGDERVR 101
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 124.0 |
| Seed ortholog evalue | 1.5e-25 |
| Seed eggNOG ortholog | 55529.EKX50313 |
| Hectar predicted targeting category | signal peptide |
| EggNOG OGs | 29Z2R@1,2RXVA@2759 |
| Ec32 ortholog description | Domain of unknown function DUF3598 |
| Ec32 ortholog | Ec-12_000370.1 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 2 |
| Model size | 1322 |
| Cds size | 1146 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4.10359.1 >prot_H-paniculata_contig4.10359.1 ID=prot_H-paniculata_contig4.10359.1|Name=mRNA_H-paniculata_contig4.10359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=382bp
MCKARLEERRRLKVKNMPRTQVKLVRIPCLVMLLALPQLSMSFCVPFAPG
PVQPARQREWESFVASNAGVWRGIWTTYDDTGAQQGEPDRMDTNLGLSSD
GERIKHVNTLFVGSVDSDCSTCFDSVETKNIQVGEYTKETFRQRAYGSGY
INGPGVTPRGDMSTEVGFRHGNSRVRCIVVHRLPAEQLAGIEPPSHLALE
RIVVVKESIASGELAGETPSVDLLWSHLDEPAWLGLWRGSAGILENDSSS
SGSSGSGPVRRGVVWRQENVSPTHLRACRCSGAGESDDHVSLEVGGRIRL
KAPKIIRAGEPADITIGWAPPPRSESNTQRILQGKVQVEALSRVVDTEYV
SEGSQRIKISPPQLFRFVVEDLERVASAGLR* back to topmRNA from alignment at H-paniculata_contig4:2151..6129+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4.10359.1 ID=mRNA_H-paniculata_contig4.10359.1|Name=mRNA_H-paniculata_contig4.10359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3979bp|location=Sequence derived from alignment at H-paniculata_contig4:2151..6129+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCACTTGCAGCATGTGCAAGGCAAGGCTTGAAGAGAGGAGGAGATTGAA
AGTCAAGAATATGCCAAGAACACAAGTGGTGAGAACTGCGTCAAACCAAA
CTTTTCCCCACTCTCCGTTAGTACGCTTCGTCGTTGCATATTTCGGATTT
CACTATGCTGTCCTACAAAGACACATGATTCGCAAGGCTCCCACCAGACT
GACGTAAGATGTATAGTACTCAAGGTTTTTACAGCAGGGGTACAGAGGTG
TAGAGCTGGGCCAGAGTACGATGACTCATAGTATTTTCAACGCATACTAC
CTGCATAACACCTGCGATATAAGCGTTGCAACAACCTTGGCAAGTGTAGC
CTACGAGATCGGCAGTTTAATGTTCAGTAACGATGCTTTAACACGCGAGC
TTTTCCCGAAAGATCTTTCGCCTCTCTCAATAATTGACAACAATTTTCGT
AACACCAATAAGCAAGCTCGTGAATTTGTATGCGTATTGCTGAGAGCCAC
CGTACCCACGATTATTTTGATTGTCATCGAACGACAGGGTATTAACTCTA
TTATAACAGTGCTGTAGTAAGGGGACGGGGTATTTTCCCCCCCATTAGTA
TCCGGTACTCTATAAAACTTTACAGTGACTGCTGTCATACATAAATTTAG
TGTACCGTCACTAAATTTAGCGAAGCGCCCCTCATACCTACGCTGACTTC
ATCGACGAAGAAACATGTTGTCTCATGAGTATGACGGGTGTGCGTCATAG
TAAGTTATCACATCTCTCCATTTGCAGGTTGCGTACCCGAAATGTTGGGA
ATAATGAACAGCTGGACGAAAAGACAGACAGGACAAGCATGATTAATGTT
TTGAAGTCATGTCAGTAAGTTTTGAACGTGTTTGATTTCGTCATTGTCTT
GTGAGAAAGGTGAAAGGTCGCTTCGCCAGTATTCAGTATGAGCACTTTCA
ATAATGATGAATGTCCTTCTTTGTTGACGTTTTTTTGCATTGGATCCATA
ATCTTGACCTGGATTTCAGCATATCCAACTGTATAGCCCCAGTGCGCGAA
CGGGACAGCGAAGATTATTAAGGCACGTTCCCTAGATAAAAAACGAAGCG
CTGCCCAAGTTTGGGGGCGGAATGACCTCATGTGGGAGAAGTCAGGTAGG
AAGATGTGTCTGCTGCGGCTTATACCCTCCCCCCCCTCCGCCGGCAAACC
GGCATTACAGTGTTGTGAGACTACCGCAGTGATGTTACGGCTATATCAAC
AAAAAGGTTGCCTGTGGCACGTAGAGTTCCAGTATCAAACAAAAAACAAT
TAAATAACTTGTGGGGAAGGCTTCTGCCGAAGCAATACCAGGAAAAAGTA
GTCCAAGTTCAGCACGACACCCAAGGAGCTTGGATTTGCCAGTTGCAGGC
ACGCGCGACCGTAGCCGACGCGTTTATGACGGCTAGAGTAAAGGATCCGC
CCGTCGTTTCGTTTTGTAACCAGGATATACTTCATGATATCTTCACCCAT
GGACGTACGTGTACAATTGTGTAAAAACTACAATTCAAATTTCTCTTTAA
AGCTCTCATGCACGACTATCAGTTCGCATAAAATTGAAGTGATGTGTACT
ACGAGCTGAAGTAACGGTCGACCTGAAGGTGGTTTGTGTATCGTCCCATA
TTGCTTCATTTTCTGTCTTTCAGCACTCGATTTTATACGAAAATGGATAA
TAGTGATGAAGTGTGTTCGTGTACCAAGTGCCATTCCCTGAACATAGGTA
TAGCACAAGATATTGACAATCATCGTGTCGGGCTAGACGTTGGGAGATGA
CTTCCGACGTTTGTATAATCGGTGTGTATGCATGGTATATGTTTTTTTTG
TTCGATAAGCGCGAGCCATTCATGCGCTGGTATTGACGGAATGGACCCAG
AGTTCTTGCAAGAGATAGCTATACACGTTCTCTGTGGCTGAGAAGCAGCA
TTTGTGCGGCCTTCTCCTCCCCCGACATCACAGACTGCGCCGAATATCAT
ATAAATTTGTTTAGGGAATGTTGAGAAAAAAACAACATAGCGCAGGCAGA
ACACGGGTGCTCGATTTCATCCCTAAAGAACTAGTAGCTCTAGCTCTATA
TGTTAGTGGGACCAAAAGTGGATCCATTCAAGATCTCATCGAGGTCCACC
TGTCCGTAGGTGGGTAGTCTCGCTCGGTGAGGATATAGGGCTTGAAAAAT
CATCCTGGGAGTCTTTCTTATGCAGGCTCGTACAGCGTGCGTTTGGAAAA
ATCAAGATGAGGGAGGGTGCCATGTGACGGAATATGTGTTGATATGGTAC
CTGGTACCTGCTCTCGTTGTTATAAGCGGACGAAAATTCAATTCAAGTAT
AATTACCTAGGGATGACCGAGGTCGAGGCTCATTCACGGCGTAACCGGTT
CCGTGATAACGTCACAATATTCAATATTCGTTGCATGTATTGTTTGCTCT
CCTGTTCTCTTTTTCGATTAATACATGGATGTTCAACCCGTTTTGTTGTC
GTATATTCCTTGCTGTTCGATTGTCACTCCTTCCCACGCTTTTTTTTGGG
CTCTGACGGTCGCAAGGGATCTCCTGTTAATTGGTTCTTGTGTTTTCGTG
GGATTCATTCATCTTCTTAGATGCACTTCGACAGGTTGGAGTGAGACGAG
CATAGATAAGTTCAAATACGTACTGTAAAAATAAGATGCCCCCCCTACTT
TTTTCGTTTCCCTCTATTATCGCATCCATATGCAGAAGCTTGTAAGAATC
CCTTGCCTGGTGATGCTGCTAGCTTTGCCACAGCTATCGATGTCCTTCTG
TGTGCCGTTTGCGCCGGGTCCCGTCCAACCCGCGCGCCAGCGAGAATGGG
AAAGCTTTGTCGCCAGTAATGCCGGGGTATGGCGTGGGATATGGACCACC
TACGACGACACAGGAGCTCAACAGGGTGAACCCGACCGCATGGATACGAA
TCTCGGACTATCATCGGACGGGGAGAGAATAAAACATGTTAACACACTGT
TCGTAGGATCTGTAGACTCAGACTGCTCTACGTGTTTCGACAGCGTGGAA
ACTAAGAACATTCAAGTCGGAGAGTACACCAAGGAAACATTCCGACAACG
TGCTTACGGATCAGGGTATATTAATGGCCCAGGAGTCACTCCGCGCGGAG
ACATGTCGACAGAGGTTGGCTTCCGACACGGCAACTCAAGGGTACGATGC
ATTGTTGTTCATCGATTGCCAGCAGAACAGTTAGCCGGGATAGAGCCACC
CTCTCATCTAGCACTGGAGCGAATTGTAGTCGTCAAGGAGAGCATTGCCT
CTGGCGAACTGGCTGGAGAAACTCCTTCTGTCGACTTGTTGTGGTCACAT
CTTGACGAACCTGCTTGGCTTGGGCTTTGGCGTGGGAGCGCTGGAATCCT
GGAGAATGACAGCAGCAGCAGCGGCAGCAGCGGCAGCGGTCCTGTTCGTA
GGGGGGTTGTGTGGCGACAGGAGAATGTGTCTCCAACCCATCTCCGCGCG
TGCCGATGTTCGGGGGCTGGGGAAAGTGATGATCATGTTTCACTGGAAGT
TGGTGGCAGAATTCGTTTGAAAGCTCCCAAAATTATTCGGGCTGGAGAAC
CAGCTGATATAACCATTGGTTGGGCTCCTCCTCCTCGAAGTGAGAGTAAT
ACCCAACGAATCCTGCAAGGGAAGGTGCAGGTTGAGGCTTTAAGTAGGGT
TGTGGATACAGAATACGTGTCTGAAGGTTCACAGCGCATCAAAATTTCTC
CACCCCAGCTGTTTCGATTTGTAGTGGAAGATCTTGAGCGTGTAGCATCG
GCTGGATTGCGGTGAGTGCGGGTCGCGAATAATTGATGCCACCCTTGACA
TTTTTTGCTGCCTGTCGCTTTCTGTGGCATTAATAGAATATGTGGCCATA
TTTTGTGTTGTGATGAACATCGATGAACATATGTCTGTAACTTGCACAAG
CGAAACAGCCGTTGCCTTGCTAATCAAAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig4:2151..6129+ >mRNA_H-paniculata_contig4.10359.1 ID=mRNA_H-paniculata_contig4.10359.1|Name=mRNA_H-paniculata_contig4.10359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2292bp|location=Sequence derived from alignment at H-paniculata_contig4:2151..6129+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCAAGGCAAGGCTTGAAGAGAGGAGGAGATTGAAAGTCAAGAATAT
GCCAAGAACACAAGTGATGTGCAAGGCAAGGCTTGAAGAGAGGAGGAGAT
TGAAAGTCAAGAATATGCCAAGAACACAAGTGAAGCTTGTAAGAATCCCT
TGCCTGGTGATGCTGCTAGCTTTGCCACAGCTATCGATGTCCTTCTGTGT
GCCGTTTGCGCCGGGTCCCGTCCAACCCGCGCGCCAGCGAGAATGGGAAA
GCTTTGTCGCCAGTAATGCCGGGGTATGGCGTGGGATATGGACCACCTAC
GACGACACAGGAGCTCAACAGGGTGAACCCGACCGCATGGATACGAATCT
CGGACTATCATCGGACGGGGAGAGAATAAAACATGTTAACACACTGTTCG
TAGGATCTGTAGACTCAGACTGCTCTACGTGTTTCGACAGCGTGGAAACT
AAGAACATTCAAGTCGGAGAGTACACCAAGGAAACATTCCGACAACGTGC
TTACGGATCAGGGTATATTAATGGCCCAGGAGTCACTCCGCGCGGAGACA
TGTCGACAGAGGTTGGCTTCCGACACGGCAACTCAAGGGTACGATGCATT
GTTGTTCATCGATTGCCAGCAGAACAGTTAGCCGGGATAGAGCCACCCTC
TCATCTAGCACTGGAGCGAATTGTAGTCGTCAAGGAGAGCATTGCCTCTG
GCGAACTGGCTGGAGAAACTCCTTCTGTCGACTTGTTGTGGTCACATCTT
GACGAACCTGCTTGGCTTGGGCTTTGGCGTGGGAGCGCTGGAATCCTGGA
GAATGACAGCAGCAGCAGCGGCAGCAGCGGCAGCGGTCCTGTTCGTAGGG
GGGTTGTGTGGCGACAGGAGAATGTGTCTCCAACCCATCTCCGCGCGTGC
CGATGTTCGGGGGCTGGGGAAAGTGATGATCATGTTTCACTGGAAGTTGG
TGGCAGAATTCGTTTGAAAGCTCCCAAAATTATTCGGGCTGGAGAACCAG
CTGATATAACCATTGGTTGGGCTCCTCCTCCTCGAAGTGAGAGTAATACC
CAACGAATCCTGCAAGGGAAGGTGCAGGTTGAGGCTTTAAGTAGGGTTGT
GGATACAGAATACGTGTCTGAAGGTTCACAGCGCATCAAAATTTCTCCAC
CCCAGCTGTTTCGATTTGTAGTGGAAGATCTTGAGCGTGTAGCATCGGCT
GGATTGCGGTGAAAGCTTGTAAGAATCCCTTGCCTGGTGATGCTGCTAGC
TTTGCCACAGCTATCGATGTCCTTCTGTGTGCCGTTTGCGCCGGGTCCCG
TCCAACCCGCGCGCCAGCGAGAATGGGAAAGCTTTGTCGCCAGTAATGCC
GGGGTATGGCGTGGGATATGGACCACCTACGACGACACAGGAGCTCAACA
GGGTGAACCCGACCGCATGGATACGAATCTCGGACTATCATCGGACGGGG
AGAGAATAAAACATGTTAACACACTGTTCGTAGGATCTGTAGACTCAGAC
TGCTCTACGTGTTTCGACAGCGTGGAAACTAAGAACATTCAAGTCGGAGA
GTACACCAAGGAAACATTCCGACAACGTGCTTACGGATCAGGGTATATTA
ATGGCCCAGGAGTCACTCCGCGCGGAGACATGTCGACAGAGGTTGGCTTC
CGACACGGCAACTCAAGGGTACGATGCATTGTTGTTCATCGATTGCCAGC
AGAACAGTTAGCCGGGATAGAGCCACCCTCTCATCTAGCACTGGAGCGAA
TTGTAGTCGTCAAGGAGAGCATTGCCTCTGGCGAACTGGCTGGAGAAACT
CCTTCTGTCGACTTGTTGTGGTCACATCTTGACGAACCTGCTTGGCTTGG
GCTTTGGCGTGGGAGCGCTGGAATCCTGGAGAATGACAGCAGCAGCAGCG
GCAGCAGCGGCAGCGGTCCTGTTCGTAGGGGGGTTGTGTGGCGACAGGAG
AATGTGTCTCCAACCCATCTCCGCGCGTGCCGATGTTCGGGGGCTGGGGA
AAGTGATGATCATGTTTCACTGGAAGTTGGTGGCAGAATTCGTTTGAAAG
CTCCCAAAATTATTCGGGCTGGAGAACCAGCTGATATAACCATTGGTTGG
GCTCCTCCTCCTCGAAGTGAGAGTAATACCCAACGAATCCTGCAAGGGAA
GGTGCAGGTTGAGGCTTTAAGTAGGGTTGTGGATACAGAATACGTGTCTG
AAGGTTCACAGCGCATCAAAATTTCTCCACCCCAGCTGTTTCGATTTGTA
GTGGAAGATCTTGAGCGTGTAGCATCGGCTGGATTGCGGTGA back to top
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