mRNA_H-paniculata_contig3983.10326.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3983.10326.1
Unique NamemRNA_H-paniculata_contig3983.10326.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3983.10326.1 vs. uniprot
Match: D7FU95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU95_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 9.210e-20
Identity = 63/97 (64.95%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:    1 STAPTLDLARLIHNAEEGGMSLEELEASLASPIVATPPALLRPGVGPAARGAAG--RGRGPLIGSRVVSGSF-TSRSTSIA----SHNAYTDDDISS 270
            S +P+LD+ARL++NAEEGGM+LEE+EA LASPIVATPPALLRPGVG AARG  G  RGRG L+     SGS+ +SRSTSI     S+N  T+DD+SS
Sbjct:  969 SQSPSLDMARLLYNAEEGGMTLEEVEACLASPIVATPPALLRPGVG-AARGGPGAPRGRG-LLQRNSASGSYISSRSTSITEDMMSNNNLTEDDMSS 1063
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BLAST of mRNA_H-paniculata_contig3983.10326.1 vs. uniprot
Match: A0A6H5JL50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL50_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.680e-15
Identity = 54/96 (56.25%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:    1 STAPTLDLARLIHNAEEGGMSLEELEASLASPIVATPPALLRPGVG-PAARGAAGRGRGPLIGSRVVSGSF-TSRSTSIA----SHNAYTDDDISS 270
            S +P+LD+AR +H AEEGGM+L+E++A LASPIVATPPALLRPGVG P A  + G     L+     SGS+ +SRSTSI     S+N  T+DD+SS
Sbjct: 1222 SPSPSLDMARFLHTAEEGGMTLDEVDACLASPIVATPPALLRPGVGAPRAPRSGG-----LLQRNSASGSYMSSRSTSITEDVISNNNLTEDDMSS 1312
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BLAST of mRNA_H-paniculata_contig3983.10326.1 vs. uniprot
Match: A0A6H5KLU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU0_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 4.320e-6
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:    1 STAPTLDLARLIHNAEEGGMSLEELEASLASPIVATPPALLRPGVGPAARGAAGRGRGPLIGSRVVSG 204
            S AP  D+A L+ NAE GGM+L++LEASL S I+ +PP++LRPG          RG G L G+R  +G
Sbjct:  168 SQAPVPDIADLLDNAEMGGMALDDLEASLTSLIMNSPPSMLRPGT------TVSRGLGLLRGNREGAG 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3983.10326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FU95_ECTSI9.210e-2064.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL50_9PHAE2.680e-1556.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLU0_9PHAE4.320e-648.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3983contigH-paniculata_contig3983:6810..9172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_001370.1
Exons3
Model size273
Cds size270
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3983.10326.1prot_H-paniculata_contig3983.10326.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3983 6811..9172 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930219.3637497-CDS-H-paniculata_contig3983:6810..68621622930219.3637497-CDS-H-paniculata_contig3983:6810..6862Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3983 6811..6862 -
1691481196.3131952-CDS-H-paniculata_contig3983:6810..68621691481196.3131952-CDS-H-paniculata_contig3983:6810..6862Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3983 6811..6862 -
1622930219.3786373-CDS-H-paniculata_contig3983:8260..84301622930219.3786373-CDS-H-paniculata_contig3983:8260..8430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3983 8261..8430 -
1691481196.3235157-CDS-H-paniculata_contig3983:8260..84301691481196.3235157-CDS-H-paniculata_contig3983:8260..8430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3983 8261..8430 -
1622930219.412443-CDS-H-paniculata_contig3983:9124..91721622930219.412443-CDS-H-paniculata_contig3983:9124..9172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3983 9125..9172 -
1691481196.333732-CDS-H-paniculata_contig3983:9124..91721691481196.333732-CDS-H-paniculata_contig3983:9124..9172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3983 9125..9172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3983.10326.1

>prot_H-paniculata_contig3983.10326.1 ID=prot_H-paniculata_contig3983.10326.1|Name=mRNA_H-paniculata_contig3983.10326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
STAPTLDLARLIHNAEEGGMSLEELEASLASPIVATPPALLRPGVGPAAR
GAAGRGRGPLIGSRVVSGSFTSRSTSIASHNAYTDDDISS
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mRNA from alignment at H-paniculata_contig3983:6810..9172-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3983.10326.1 ID=mRNA_H-paniculata_contig3983.10326.1|Name=mRNA_H-paniculata_contig3983.10326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2363bp|location=Sequence derived from alignment at H-paniculata_contig3983:6810..9172- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGACGGCTCCGACGCTTGACTTGGCGCGTCTCATCCACAACGCTGAGGT
TGAAAACGAGGGATGAAATCATTTGTTTGTATTGTTTTTTGTATATATAT
ATATATTTTTTTTTATGGTTTGGTTTATTTTGATTTTGATTTTGATTTAG
ATCGGTTCGAAGGTGTGTGTAGGCGGTTTTAGAGGAATGGAGGCGTTGAA
TATATTTTTTTCCAATGTTGAGCACTAAAGTGTTTCGACAAATGTGTTTT
GAATTTGAGTAACAATTAGAGGAATACGAAGATTCTCGTTTCGTGTTTTG
TTTTTCAATAGGTGATGTTGGTTTATTACCTTGTATAATAATTCGTTCGT
TGTTTTTGGTTGTTTATGGAAGATATAATTAAAAAATTGTATTTTTCGTG
AAATTCGTTACTGTTGCCATATGTCCTCAAATGCCTATATGACTGAATGC
TGGCGAATAGACAGACATGGTACACCCGCATCGTTTTCAAACATTCGATG
CAGCAGGAAAATTTGCGGTCTACTGTAAGCGAATTTCTTAACTCTTGCAA
AGTGCTCTTGTTTCGTTTGCCGTATTGTTGTATTTCAGCTTGGTCGAGTA
GCTTGCCTTTTATCAACAAGACGGTTTCGTATATTTGTGTCTGCTCTCAC
TGGAAACAAGACTGTATGCAAGTGTGTAATGTGTTGTTCTGTACTTCTAC
GCTTTCGATGTTTCATGTGTTTGACATTTAAAATACGTACAGGAGGGCGG
CATGAGTCTTGAAGAACTGGAGGCTAGCCTGGCCTCCCCCATCGTCGCCA
CGCCGCCCGCCCTTTTGCGTCCGGGAGTTGGTCCCGCCGCCCGCGGTGCT
GCCGGGCGCGGACGCGGGCCTCTGATCGGTAGCCGTGTTGTGTCTGGGTC
GTTTACTTCAAGGTGTGCAGTCGAAATCGAGATGGGGATTAAAAAAACGA
GTAGGGGGGGGGAGAACGACTGATACCACGAAAATTGGAAACAAGTCTCC
ATTTTGCCAACTGAAATTCTCGCCATGGTAGTGAATTGACCCTGTCACAG
CCAGTTGCACTAAAACGCTGAATTTCGTGTCATACTCCATTGTAGATATG
TTGGGGTTATTTAGCTAGGTTCCATCTGCGTCTGTATAATAGACCCATGA
ACAAAATTAGAACGAGTCTACGCCCAAAAGGGTAGGGCACGGCTGTTTTG
CCGATGACTGGACGCGAGTGTGATTAAGGGTTTTAACGGGTGAGGATTCT
GCTTCTCAAAGGGCAGTCTAAAACCGTATGTCAAAACGGACAAGTCCCGT
ACTACGGCTACCCCACAATTTCCTTGATTCTTGAGCTTAGAATCAAGGGG
AGACCGACGTGATCATTAACCTGAGTTCTTCGGGGATCTAAATCGGGGCC
TTGTACTTGATACATTGTTGTGGGATTAAGCTTCTTCCCTCACAGCACTT
TCGAAATTATATGATCGACATTGTATACCTCCGGGGTGGAAAGAAAGAAA
GAAATGAACAAAATTAGATAACCACTAAGAAGGACTTGAAGGTCTAGGAT
TACTTACTCACAAACTGAACAAACAAGGGGGGACAATGAGATATTTTTGT
GACATAATGATTAAGTTGTGTGTTTTTTGGCAAAAAGCTGGGAGCAGGAT
AGACTGTAAGTTAGTTGGGTTTGCTCGATTGGCGTTTTGGATTGATTGGG
ATTTAGGGGGATGTAAGGAAGGACCACGTAGTGTTGTTGTTGTTGTTGTT
GGTGGTGGTCGTGGTGGTGATGATATATGCTCGATGTCCGATGTCCAGGT
CAGGTTCATGGCGAACAAAACCTGTCCGATAGTCAATATTTGTCCGTGAA
GAACAACGAGTACTTTGGTGCGAACAAGCCGATCGCCTCCTGGGCGTTCC
CACGAAAGTCACGCGCACCCCCCCCCGAAATGATGTGGTTTTATGGTGGT
AGTTGTATACAAGTGAATGATAAAGGCAGCTCCATAAAACTCAGCATGGT
TACGAAAGAGTCATTTATATGAGGTTCAGAGTTATTTAGTATCATGTTTC
GGTCCCTCCATCCCCCCCTTCTGGATAGCATGCTAGGATAGTTTTTTTTT
TTTAAATCTTATGTTTTCTTTTTTTTAAATCTTATGTTTTCTTTTTTTTA
AATCTTATGTTTTCTTTTTTTTAATCTTATGTTTTCTTTTTGTTGCTTTT
TTGTTTGTTTTGGTTAAACCTGCACCCGGGGCACCAACACACCGTACATC
TCGACGCAACATGCAACGCGACGCGACGCGACGCGACGCGACGCCATGCT
ATCAAATCAGATCGACATCGATCGCCTCGCACAACGCCTACACGGACGAC
GATATCTCCTCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3983:6810..9172-

>mRNA_H-paniculata_contig3983.10326.1 ID=mRNA_H-paniculata_contig3983.10326.1|Name=mRNA_H-paniculata_contig3983.10326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig3983:6810..9172- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGACGGCTCCGACGCTTGACTTGGCGCGTCTCATCCACAACGCTGAGTC
GACGGCTCCGACGCTTGACTTGGCGCGTCTCATCCACAACGCTGAGGAGG
GCGGCATGAGTCTTGAAGAACTGGAGGCTAGCCTGGCCTCCCCCATCGTC
GCCACGCCGCCCGCCCTTTTGCGTCCGGGAGTTGGTCCCGCCGCCCGCGG
TGCTGCCGGGCGCGGACGCGGGCCTCTGATCGGTAGCCGTGTTGTGTCTG
GGTCGTTTACTTCAAGGAGGGCGGCATGAGTCTTGAAGAACTGGAGGCTA
GCCTGGCCTCCCCCATCGTCGCCACGCCGCCCGCCCTTTTGCGTCCGGGA
GTTGGTCCCGCCGCCCGCGGTGCTGCCGGGCGCGGACGCGGGCCTCTGAT
CGGTAGCCGTGTTGTGTCTGGGTCGTTTACTTCAAGATCGACATCGATCG
CCTCGCACAACGCCTACACGGACGACGATATCTCCTCGATCGACATCGAT
CGCCTCGCACAACGCCTACACGGACGACGATATCTCCTCG
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