mRNA_H-paniculata_contig116.1032.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig116.1032.1
Unique NamemRNA_H-paniculata_contig116.1032.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig116.1032.1 vs. uniprot
Match: D7FQQ5_ECTSI (4'-phosphopantetheinyl transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ5_ECTSI)

HSP 1 Score: 308 bits (790), Expect = 4.880e-97
Identity = 190/372 (51.08%), Postives = 236/372 (63.44%), Query Frame = 1 
Query:   25 MRRRDSICPWATAGLLMLVLSKHPALSLIIAVRQLHISRGPTHRPHRSCHLHPRATSCRSHTNDQCADYGLHRSAVGSIREGKQRRGLRRARSWMLDAADLKGQSISFASARAAPAAALRTAMDTYLPFGRLVGVELPVKITEEAMRVASAELMPEEVSYCLGLHPAMQLPFLGGRLAIRRALRDVGNKANTAITPADAGSSGVVTAPVPLDSTCGAILHNEAGAPLLPEGMSASISHKHHLAVALVQKAGAPGHLGVDIELPAVRRRADLRRRVLTQQEVDNLGGVSGLSEEEDVLLRFSMKEAVYKAAHPVLRRPLVFKDVEVQPKSDGSCEVHTTKPGAWGNLSLLAGWVRIEDVLGQPLLLTYCKAVE 1140
            M R+ ++  WAT   ++L+L + PALS+   V             H S +L   A+  RS  + + A          +     +R+G+RR R+  +  +D  G S S AS+     + L TAMD  LPFGR VGV LP  +T++ M  A  EL+P+E++YCLGL  A+QL FLGGRLAIRRAL                G   V  A     ++  AILHN+ GAP+LPEG+SASISHK HLAVALVQ +G  GHLG+DIELPAV+RR DLRRRVLT +E D+LGGV G+S++E+VLLRFSMKEAVYKAAHP L RPL FKDVEVQP   G CEV TT  GAWG L L AGW+   DVLGQPL L+YCKAV+
Sbjct:    1 MERKVALHRWATLAYVILLLCESPALSMAFCV-------------HHSRYLRS-ASYARSFESARLA---------AATSTPPRRKGMRRGRATSMLHSDACGGSTS-ASSSQVQLSQLPTAMDRILPFGRCVGVALPPTLTDDVMTAAGEELLPKEMAYCLGLPRALQLGFLGGRLAIRRALN---------------GMEDVSAA-----ASSQAILHNQDGAPVLPEGVSASISHKQHLAVALVQ-SGCEGHLGIDIELPAVQRRLDLRRRVLTPRECDSLGGVDGMSDQEEVLLRFSMKEAVYKAAHPFLHRPLGFKDVEVQPVRGGGCEVRTTTRGAWGGLRLSAGWMFFPDVLGQPLFLSYCKAVD 327
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BLAST of mRNA_H-paniculata_contig116.1032.1 vs. uniprot
Match: A0A838HLQ8_9BACT (4'-phosphopantetheinyl transferase superfamily protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A838HLQ8_9BACT)

HSP 1 Score: 119 bits (297), Expect = 7.260e-27
Identity = 86/226 (38.05%), Postives = 117/226 (51.77%), Query Frame = 1 
Query:  403 LPFGRLVGVELPVKITEEAMRVASAELMPEEVSYCLGLHPAMQLPFLGGRLAIRRALRDVGNKANTAITPADAGSSGVVTAPVPLDSTCGAILHNEAGAPLLPEGMSASISHKHHLAVALVQKAGAPGHLGVDIELPAVRRRADLRRRVLTQQEVDNLGGVSGLSEEEDVLLRFSMKEAVYKAAHPVLRRPLVFKDVEVQPKSDGSCEVHTTKPGAWGNLSLLAGW 1080
            LP G  VGV LP + +E A  +A  +L  +E ++  GL    ++ ++GGR+A+ RAL   G +A                         GAIL  E GAP LP G++ S+SHK  LAVALV  A A   +G+DIE   V R A++ R VLT+ E   L  +       +VLLRFS KEAVYKA  P +RR + F++V V+P+  G   V     G  G   +  GW
Sbjct:   11 LPHGLCVGVRLP-EPSENAGELALEQLGADERAHAAGLPFRRRITWVGGRVALHRALERAGQQA-------------------------GAILATERGAPSLPPGIAGSVSHKEGLAVALVAPA-AGWRVGIDIERMRVPR-AEIERHVLTEGERQELTALRQEERWREVLLRFSAKEAVYKALDPFVRRYVSFQEVTVRPEPQGGGRVQLALKGGEGPFQVEMGW 208
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BLAST of mRNA_H-paniculata_contig116.1032.1 vs. uniprot
Match: A0A7S2SQZ6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQZ6_9STRA)

HSP 1 Score: 121 bits (303), Expect = 7.960e-27
Identity = 89/222 (40.09%), Postives = 117/222 (52.70%), Query Frame = 1 
Query:  403 LPF--GRLVGVELPVKITEEAMRVASAELMPEEVSYCLGLHPAMQLPFLGGRLAIRRALRDVGNKANTAITPADAGSSGVVTAPVPLDSTCGAILHNEAGAPLLPEGMSASISHKHHLAVALVQKAGAP---GHLGVDIE-LPAVRRRADLRRRVLTQQEVDNLGGV--SGLSEEEDVLLRFSMKEAVYKAAHPVLRRPLVFKDVEVQPKSDGSCEVHTTKP 1044
            LPF  G  +GV+LP  + + A+     EL  EEV++   L       FLGGR+AIRRA+   G K                     L  T G I  +  GAP+L  G+  SISHK H+AVALVQ        G +GVDIE L   R +  L +RVL ++EVD LG +  +GL+++++VLL FS KEAVYKA  P L R + F++V      DGSC      P
Sbjct:   82 LPFHGGLCLGVQLPDALADTAL---PPELHEEEVAFASDLSQIRAAEFLGGRVAIRRAM---GAK---------------------LAETVGPIHRSSRGAPVLSNGIRGSISHKRHVAVALVQTGPCSPVGGRIGVDIEDLHPTRYKGRLAQRVLLEEEVDKLGSLESTGLTKDQEVLLAFSFKEAVYKAIDPFLERFVSFQEVVASFSPDGSCSARMVAP 276
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BLAST of mRNA_H-paniculata_contig116.1032.1 vs. uniprot
Match: A0A7S4T7K3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T7K3_9STRA)

HSP 1 Score: 122 bits (305), Expect = 9.320e-27
Identity = 90/234 (38.46%), Postives = 131/234 (55.98%), Query Frame = 1 
Query:  403 LPFGRLVGVELPVKITEEAMRVASAELMPEEVSYCLGL-HPAMQLPFLGGRLAIRRALRDVGNKANTAITPADAGSSGVVTAPVPLDSTCGAILHNEAGAPLLPEGMSASISHKHHLAVALVQKAGAPGH-LGVDIELPAVRRRADLRRRVLTQQEVDNLGGVSGLSEEEDVLLRFSMKEAVYKAAHPVLRRPLVFKDVEVQPKSDGSCEVHTT-KPGAWGNLSLL-AGWVRIE 1092
            LP G+ VG+ L    +  A    S  L P+EV+Y + L     Q  F  GRLA+R AL    + ++ A  PA +                 AIL +E G P +P+G+  SI+HK    VALV  A      +GVD+E     RR+ + RR+LT+ E+ NLG V G+++EE+VLLRFS+KE+VYKA HP+L + + FK+ E+ P ++G+  V+   K GA  +L  + A W RI+
Sbjct:  119 LPEGQCVGLRLCTNASPPAW--ISDVLHPKEVAYAMNLPSQTSQDTFFVGRLAMRHALL-ASHTSSFAALPAVSADDA-------------AILKDEHGRPTMPKGVLGSITHKKKTGVALVSSASTRRRGVGVDLEQTCTGRRS-IARRILTEGEILNLGCVEGVTKEEEVLLRFSLKESVYKAMHPLLNQYIGFKEAEIIPHTNGTATVYINLKNGAHASLDCITAHWRRIQ 335
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BLAST of mRNA_H-paniculata_contig116.1032.1 vs. uniprot
Match: A0A7V4FZ99_9DELT (Enterobactin synthase component D n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V4FZ99_9DELT)

HSP 1 Score: 110 bits (276), Expect = 5.950e-24
Identity = 84/240 (35.00%), Postives = 115/240 (47.92%), Query Frame = 1 
Query:  403 LPFGRLVGVELPVKITEEAMRVASAELMPEEVSYCLGLHPAMQLPFLGGRLAIRRALRDVGNKANTAITPADAGSSGVVTAPVPLDSTCGAILHNEAGAPLLPEGMSASISHKHHLAVALVQKAGAPGHLGVDIE----LPA------VRRRADLRRRVLTQQEVDNLGGVSGLSEEEDVLLRFSMKEAVYKAAHPVLRRPLVFKDVEVQPKSDGSCEVHTTKPGAWGNLSLLAGWVRIE 1092
            L  GR VGV +P ++ +  + V    L PEE +    L PA +  ++ GR+A+R+A RD+G      + P                   G IL N  GAP LP  ++ SISHK  LAV L  +A     LGVD+E    LPA       + R D+R RVLT+ E+  L  V   +    VLL FS+KEA+YKA HP++ R + F +  V P  DG   V  +     G       W  I+
Sbjct:   12 LVHGRCVGVCIPTEVDDRLLDV----LFPEERTLVSALAPARRPSWVAGRIALRQAFRDLG------LEP-------------------GPILMNRHGAPDLPPDLAGSISHKKTLAVGLAARAENRTCLGVDLEDIPPLPASVEEARAQARPDIRARVLTKDELAQLERVPEQARRRQVLLHFSLKEALYKALHPLVIRHVGFHEASVTPLPDGGVRVTLSLSEDQGTFDAECTWTEIQ 222
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BLAST of mRNA_H-paniculata_contig116.1032.1 vs. uniprot
Match: A0A7S2A1R9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A1R9_TRICV)

HSP 1 Score: 112 bits (279), Expect = 7.280e-24
Identity = 94/264 (35.61%), Postives = 128/264 (48.48%), Query Frame = 1 
Query:  403 LPFGRLVGVELPVKITEEAMRVASAE--------LMPEEVSY-----CLGLHPAMQLPFLGGRLAIRRALRDVGNKANTAITPADAGSSGVVTAPVPL-----DSTCGAILHNEAGAPLLPEGMSASISHKHHLAVALVQ--------KAGAPGH-LGVDIELPAVRRRADLRRRVLTQQEVDNLGGVSGLSEEEDVLLRFSMKEAVYKAAHPVLRRPLVFKDVEVQPKSDGSCEVHTT-KPGAWGNLSLL-AGWVRIEDVLGQ 1107
            LP GR VG+ LP   +      +           L PEEV +     C G   +    F  GRLAIR AL  +  +          GSS      VP       S+   IL +  G P +P+G   SISHK    VALV         K G P   +GVDIE    RR + + R+VLT+ E+D+LG + G++  E+VLLRFS+KE+VYKA HP+L + + F++ E+ P  DG+  V    K GA   L  + A W R+    G+
Sbjct:   27 LPEGRCVGLRLPPSSSSSPSAESDGTKEHWIREYLPPEEVGFGLDQGCAGTRDS----FFAGRLAIRAALGSLAKQQQEEEQGTAEGSSASSVPSVPRIGPSSSSSFPPILRDGHGRPTVPDGFLGSISHKRVTGVALVSRDDDNKGGKRGRPRRGVGVDIEQTRSRRMS-IERKVLTKGELDDLGKLEGVTRSEEVLLRFSLKESVYKALHPLLTQYIGFQEAEIVPLPDGTARVALDLKTGAQDRLGYVGAHWRRMRVRRGE 285
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BLAST of mRNA_H-paniculata_contig116.1032.1 vs. uniprot
Match: A0A4D9CTH4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTH4_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.130e-22
Identity = 78/199 (39.20%), Postives = 113/199 (56.78%), Query Frame = 1 
Query:  529 QLPFLGGRLAIRRALRDVGNKANTAITPADAGSSGVVTAPVPLDSTCGAILHNEAGAPLLPEGMSASISHKHHLAVALVQKAG-----APGHLGVDIELPAVRRRAD-LRRRVLTQQEVDNLGGVS--GLSEEEDVLLRFSMKEAVYKAAHPVLRRPLVFKDVEVQPKSDG-SCEVHTTKPGAWGNLSLLAG-WVRIED 1095
            +L FLGGRLA+RR+LR +                     P+ ++    A+L +E GAP LP  + ASISHK  LA+ L++        A  ++GVDIE+   R   + +  RVLT++E D LGG++  G+S E ++LLRFS+KE+VYKA +P LRR + F++ EV P  DG S  V   K GA   L    G W ++++
Sbjct:  111 RLAFLGGRLALRRSLRKLPQ-------------------PIRIEQ---AVLRDEKGAPALPSHVQASISHKQDLAICLLRSVEEDPNRALSNIGVDIEICQPRPSTNSIATRVLTRREQDELGGLASLGISGESELLLRFSLKESVYKAIYPFLRRYVAFQEAEVTPHVDGTSTIVLLLKGGAAEGLFEAEGHWQQVDN 287
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BLAST of mRNA_H-paniculata_contig116.1032.1 vs. uniprot
Match: W7TPT1_9STRA (4-phosphopantetheinyl transferase entd n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPT1_9STRA)

HSP 1 Score: 108 bits (269), Expect = 8.820e-22
Identity = 73/192 (38.02%), Postives = 110/192 (57.29%), Query Frame = 1 
Query:  481 LMPEEVSYCLGLHPA-MQLPFLGGRLAIRRALRDVGNKANTAITPADAGSSGVVTAPVPLDSTCGAILHNEAGAPLLPEGMSASISHKHHLAVALVQKAG-----APGHLGVDIELPAVRRRAD-LRRRVLTQQEVDNLGGVS--GLSEEEDVLLRFSMKEAVYKAAHPVLRRPLVFKDVEVQPKSDGSCEV 1029
            L P+E+   + +     +L FLGGRLA+RR+LR +                     P+ ++    A+L +E GAP LP  + ASISHK  LA+ L++        A  ++GVDIE+   R   + +  RVLT++E D LGG++  G+S E ++LLRFS+KE+VYKA +P LRR + F++ EV P  DG+  +
Sbjct:  178 LHPKELDLAMNMSNLDSRLAFLGGRLALRRSLRKLPQ-------------------PIRIEQ---AVLRDEKGAPALPSHVQASISHKQDLAICLLRSVEEDPNRALSNIGVDIEICQPRPSTNSIATRVLTRREQDELGGLASLGISGESELLLRFSLKESVYKAIYPFLRRYVAFQEAEVTPHVDGTSTI 347
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BLAST of mRNA_H-paniculata_contig116.1032.1 vs. uniprot
Match: A0A6M4IQ62_9BACT (4'-phosphopantetheinyl transferase superfamily protein n=1 Tax=Gemmatimonas groenlandica TaxID=2732249 RepID=A0A6M4IQ62_9BACT)

HSP 1 Score: 105 bits (262), Expect = 9.340e-22
Identity = 82/237 (34.60%), Postives = 115/237 (48.52%), Query Frame = 1 
Query:  364 APAAALRTAMDTYLPFGRLVGVELPVKITEEAMRVASAELMPEEVSYCLGLHPAMQLPFLGGRLAIRRALRDVGNKANTAITPADAGSSGVVTAPVPLDSTCGAILHNEAGAPLLPEGMSASISHKHHLAVALVQK-----AGAPGHLGVDIELPAVRR---RADLRRRVLTQQEVDNLGGVSG--LSEEEDVLLRFSMKEAVYKAAHPVLRRPLVFKDVEVQPKSDGSCEVHTTKP 1044
            AP+A   T +D         G+ LP         VA A L P+E +    + P  +  F+ GRLA+R A                      V    P D+T G IL  E GAP+LP  ++ S+SHKH  A+ALV       AGA  H+GVD+E   + R   R  + RR+LT  E+D L       L++ E V+L F++KEAVYKA  P +RR + F +V ++  +DG+  V    P
Sbjct:   25 APSAFTMTRVDVPATLDPDTGIWLPAL-------VADARLHPDEAALVEAMPPTRRATFVAGRLAMRAA----------------------VAVHAPQDAT-GPILRTERGAPVLPNSVAGSVSHKHDAALALVLPRRALTAGASVHVGVDLEHRPIARDVTRPSIARRILTAPELDALSAFDADPLAQRERVILSFALKEAVYKAIDPTVRRYVRFTEVALEFTADGAVAVSLLLP 231
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BLAST of mRNA_H-paniculata_contig116.1032.1 vs. uniprot
Match: A0A7S1GJ90_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJ90_CYCTE)

HSP 1 Score: 107 bits (267), Expect = 1.240e-21
Identity = 83/232 (35.78%), Postives = 118/232 (50.86%), Query Frame = 1 
Query:  394 DTYLPFGRLVGVEL-------PVKITEEAMRVAS----AELMPEEVSYCLGLHPAMQL--PFLGGRLAIRRALRDVGNKANTAITPADAGSSGVVTAPVPLDSTCGAILHNEAGAPLLPEGMSASISHKHHLAVALVQKAGAPGH-------LGVDIELPAVRRRADLRRRVLTQQEVDNLGGVSGLSEEEDVLLRFSMKEAVYKAAHPVLRRPLVFKDVEVQPKSDGSCEV 1029
            D  LP GR VGVEL       P  ++ E +  +S    A L P+EV++ +   P       F  GRLA+R ALR   N A+ +I                        L ++ G P++P G   SISHK ++ VALV               +G+DIE    +R  D+ ++VLT  E+  LG V G++ EE+VLLRFSMKE++YKA HP+L + + F++ EV P  DG+  V
Sbjct:   99 DIELPEGRCVGVELMHPGPDHPDSLSPENIARSSHWIHAMLHPQEVAFGVS-QPKEHARDSFFVGRLAMREALRLEQNSAHASI------------------------LKDQHGRPIVPRGYLGSISHKRNVGVALVTTTSTTSDESETVEGVGIDIEQTLTKR--DIAKKVLTPTEISELGKVEGVTIEEEVLLRFSMKESLYKAMHPILCQYVGFQEAEVTPYPDGTASV 303
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig116.1032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQQ5_ECTSI4.880e-9751.084'-phosphopantetheinyl transferase n=1 Tax=Ectocar... [more]
A0A838HLQ8_9BACT7.260e-2738.054'-phosphopantetheinyl transferase superfamily pro... [more]
A0A7S2SQZ6_9STRA7.960e-2740.09Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4T7K3_9STRA9.320e-2738.46Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7V4FZ99_9DELT5.950e-2435.00Enterobactin synthase component D n=1 Tax=Deltapro... [more]
A0A7S2A1R9_TRICV7.280e-2435.61Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A4D9CTH4_9STRA3.130e-2239.20Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TPT1_9STRA8.820e-2238.024-phosphopantetheinyl transferase entd n=1 Tax=Nan... [more]
A0A6M4IQ62_9BACT9.340e-2234.604'-phosphopantetheinyl transferase superfamily pro... [more]
A0A7S1GJ90_CYCTE1.240e-2135.78Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig116contigH-paniculata_contig116:33821..40531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.0
Seed ortholog evalue3.8e-82
Seed eggNOG ortholog2880.D7FQQ5
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.4'-phosphopantetheinyl transferase superfamily
EggNOG OGs2EAJI@1,2SGT3@2759
Ec32 ortholog description4'-phosphopantetheinyl transferase superfamily
Ec32 orthologEc-01_000130.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1736
Cds size1131
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig116.1032.1prot_H-paniculata_contig116.1032.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig116 33845..39950 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928870.671368-UTR-H-paniculata_contig116:33820..338441622928870.671368-UTR-H-paniculata_contig116:33820..33844Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig116 33821..33844 +
1691480651.193963-UTR-H-paniculata_contig116:33820..338441691480651.193963-UTR-H-paniculata_contig116:33820..33844Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig116 33821..33844 +
1622928870.7368221-UTR-H-paniculata_contig116:39950..405311622928870.7368221-UTR-H-paniculata_contig116:39950..40531Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig116 39951..40531 +
1691480651.239555-UTR-H-paniculata_contig116:39950..405311691480651.239555-UTR-H-paniculata_contig116:39950..40531Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig116 39951..40531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928870.6847754-CDS-H-paniculata_contig116:33844..343511622928870.6847754-CDS-H-paniculata_contig116:33844..34351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig116 33845..34351 +
1691480651.203786-CDS-H-paniculata_contig116:33844..343511691480651.203786-CDS-H-paniculata_contig116:33844..34351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig116 33845..34351 +
1622928870.7017477-CDS-H-paniculata_contig116:38265..385271622928870.7017477-CDS-H-paniculata_contig116:38265..38527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig116 38266..38527 +
1691480651.2144346-CDS-H-paniculata_contig116:38265..385271691480651.2144346-CDS-H-paniculata_contig116:38265..38527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig116 38266..38527 +
1622928870.7152824-CDS-H-paniculata_contig116:38912..391091622928870.7152824-CDS-H-paniculata_contig116:38912..39109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig116 38913..39109 +
1691480651.2219548-CDS-H-paniculata_contig116:38912..391091691480651.2219548-CDS-H-paniculata_contig116:38912..39109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig116 38913..39109 +
1622928870.7268853-CDS-H-paniculata_contig116:39785..399501622928870.7268853-CDS-H-paniculata_contig116:39785..39950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig116 39786..39950 +
1691480651.2291727-CDS-H-paniculata_contig116:39785..399501691480651.2291727-CDS-H-paniculata_contig116:39785..39950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig116 39786..39950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig116.1032.1

>prot_H-paniculata_contig116.1032.1 ID=prot_H-paniculata_contig116.1032.1|Name=mRNA_H-paniculata_contig116.1032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=377bp
MRRRDSICPWATAGLLMLVLSKHPALSLIIAVRQLHISRGPTHRPHRSCH
LHPRATSCRSHTNDQCADYGLHRSAVGSIREGKQRRGLRRARSWMLDAAD
LKGQSISFASARAAPAAALRTAMDTYLPFGRLVGVELPVKITEEAMRVAS
AELMPEEVSYCLGLHPAMQLPFLGGRLAIRRALRDVGNKANTAITPADAG
SSGVVTAPVPLDSTCGAILHNEAGAPLLPEGMSASISHKHHLAVALVQKA
GAPGHLGVDIELPAVRRRADLRRRVLTQQEVDNLGGVSGLSEEEDVLLRF
SMKEAVYKAAHPVLRRPLVFKDVEVQPKSDGSCEVHTTKPGAWGNLSLLA
GWVRIEDVLGQPLLLTYCKAVESPQQ*
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mRNA from alignment at H-paniculata_contig116:33821..40531+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig116.1032.1 ID=mRNA_H-paniculata_contig116.1032.1|Name=mRNA_H-paniculata_contig116.1032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6711bp|location=Sequence derived from alignment at H-paniculata_contig116:33821..40531+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGGAAAGTGACACGATCTGTCGATGAGGCGTCGGGACAGCATATGCCC
TTGGGCAACCGCTGGGCTTCTCATGCTAGTGCTTTCCAAGCATCCCGCTC
TTTCTCTGATCATTGCGGTCCGCCAGCTGCACATTTCTCGAGGCCCAACC
CATCGTCCTCACCGAAGTTGCCACTTGCACCCCCGCGCAACTTCTTGCAG
AAGCCACACTAACGACCAGTGTGCAGATTATGGATTGCATCGCTCTGCGG
TAGGAAGCATTAGGGAAGGGAAGCAACGGAGAGGACTTCGTCGCGCGCGT
TCGTGGATGCTTGATGCTGCTGACTTGAAGGGTCAGTCGATCTCTTTCGC
TAGTGCGAGGGCTGCGCCCGCAGCGGCTTTGCGTACTGCCATGGACACCT
ACTTGCCGTTTGGGAGATTGGTTGGTGTGGAGCTACCTGTGAAAATTACG
GAAGAGGCTATGCGAGTCGCGAGCGCTGAGCTCATGCCAGAGGAGGTGTC
TTATTGTCTGGGGCTTCACCCGGCAATGCAGGCGAGAGGTGGTGTCATGG
TAACGGGATCCTTTACGGATTTCGGAATAGTTCTTTTGCGCTTTCTCTCT
CTTTTGGATGCTGAATGTGCACCTCTGTTCTTCAACATCTGTGTTCATAT
CTCTTGTACAGACAGAACAGTAGAACACGGAGTGTAACAATACGGCTCGA
AGTATTAAACCTATAGGTATGGTGCTTACGAAGACATGTGAAGTACCGTC
GTTGGTGTTTTGCGCCGCTACGTCTTCACTTCGTTCGGTCTACCGTATAG
ACTATACTAGTAGCCTGTGCACAACGGTATTTTGTAAATATCTCCTGCAA
TTTTTGGTTTCATGAAAAAATAAAGCGTATTATTCGAAACCCTACACGTT
CAGCTTGTATGAAGATATCTTAAAAGTGTTCTTTGAATTCGAAATGGTTA
TCTCAACACCTTTTTAGAGGCCCAAGTCGGCTGAAAACCATGGCTTTCCC
CTGTTTCGCGAGCCATTTCTTTGCATGTACGTAGAGTTTCAGAACGAGCA
ATAGCGCAAACGAAGTCCCTCAATTATACCAAGCTGCTCGTCGCGAAAGG
GGTGACGAATATGACGTCGACGTCACCATCGATGGCGAGTGGTAGCAGGA
GTGGTACACGGAGGTTTTCCTCCCCACACTCAAGGGAAAGATGCCATGGT
TGGGGGAGGAGGAAGTGGTTCTGCGGGCAAGAGCACGTCGAGGAAATCTA
AACCTGGCTGGGAGGGAGGACGGTTGGAACGTCAAGCTCATGACACAGCC
GGCATAGTCTCCCGATCTCAGTATCAACCATTTGGGATTTTTTGCATCCC
TGACATCCAGAGTGTGGAGGGAGTGCTACCATACGTCAGATGCCCTTGTA
GAGTGATTGAAGAGCACGTTCGGCCAGCATGACGCGGATAGTCTAGAGTT
GGTTTGGTGGAGCCTCTTCAAGCGGTACGACCTAGTGTTGAAAGTGCTAT
TAATAGGGGGAAACGATTTAGAAATTGGGCATATGGGGAGCAGGAAAAGA
CCGCGTGAGGGGCTTTTGGACCAACTTGGTCCCGATTGACAAAACCACTT
ACAACGCAGCCTTCAATTGATGGATTGATAAAGCAGGGTCGCAGCACTGA
AGAACGATTTTAATTGTAATATGTCGTATGGAAGCGGCAGTAATCGATAC
AACGCAACAAATCCATTCGTTAATCAGAGGTCTCCCTCTCCTTGAACCTG
ATTTTCAGTTGATTGCGGTCTACTCGGTTGTGTTTGCAAAACCTTCCCTT
TCCGAAAACAAAACAAAACAAGCGTGTTGAGATATCCGGTTCTCAACCAC
TTCGAATTAGAAAGACGTTGTGAAGATATTTACATGCAAGTTGAACGTGT
AGGCTATGTATTGAATGACCTATTTTTCTTTTTACGAAACCTAACATTTC
AAAAGATATTTACAAAATACCGTTATAAGGCGGACTTATCCAACAGAGGT
AGTATATTGATGCAGAGACCACGGGTGTTACTCGTAGACTGGAATCAATC
TCGGATATTACTGTCAATCCCCAAATTGGTCATGATCTAAGGTTACTGAT
AAGTCTAAGTGTACATACGTACATAACTGAGACTTGGGGTCTCAAGAGGA
TACGATAGAGTTCTTATACAGGATGGTTGCACCAAGAAGCACAACAATCC
TTTGCCCATATTTTTCTTGTGATGTGATATACATGCCAAAATGTACAAAT
GAACGTCTAGTTGACGCTGAGCACATGAAAAACACAATTCCGTGGTCCGA
CTCGGGCTCCGACGTTTCTGTTCTATCAAGTAAATAAAATAACGACATTT
GGACCAATGTACAAAATGTGCCGGAAGTTGTTCCTCCGGGTATTTCTCGC
ATTTTTCAGCCTTCACTCCATGGTCTTTATTGCTTGTAAATAAAAAACTC
TAATTCATGTCTTTTCCTTGGAGTATGTGATTCTACTACAATGCAACAAA
AAAATCTTACAAACTGGAAGCTCGTAAGAACGATGGAGGAAAATTAAAAT
TCGCAAGATTTCCGTTTGGGGACTTGAGTGGTTTTTCTTTTTTTTCCGTG
GTTTTCACGAGTTATTAAGAACGAACACGAAAACGCGATTGTTCTCATTG
AAATTACAGCCTCAATATCGCGCTTTTTTTGATATGTAAATTCGAAAATC
GAGGGAAAGGGAACACTACCAAAACCAAAAATTTGACCAAATATTATCCC
CCTTAAACCTGCGGGGGGGGAAATGACAAGAAACAACTTGTTTCCAGCAA
GCCCAACGTCAAGTTACCCACCACGATAAATAACTGTTGTGTTGTCATGT
CCCGATTGTCATGACTGACTGGTAGACCACCTGCTTCTGTGGCTGTGGGT
ATTGTTACTCGTAATAGGACGCCACACACCCAGCGGCTATCGTTTGCTAC
GGAAATCTTGGGATGGTTTGCGGGTGCCTACCAGCTCCTGTGTCCCGCAA
ACATGGTGCTGCATGCAGCAGCACACGAACAGTCTGCACTACATGCAGAA
ATTATGTGTGTATCCTTCGTCGCGGGGCGCAAGTCTATGGCATCATGTTG
CTTGGGCTGTGCAGCTGACTGTCACTGCTCGAGGGACCCAGTCTATGTAA
TGCAGTCTGTCACTTGCACCACTTTTACATCAAGTACACGGCGCTCCGGC
TACTTTTCCAGCCCTTGACGAACGGGAATTTTGTCAATATTGCCGATAAC
CTAAACACGTCGCACTCTCGGTGTAGTATTTGTCATATGTTTGTCGACAT
GCGGGTCTAATCTCAACCCGATCAAAGCAATTCTGTCCCTCGAAATTCGG
TATCCCCGAACCATTCCCTTCTAAAAATAATCCTTCTTCGACGCGGGACT
GTCAGAAGCCACACGTCGAAATTTGTCGAAATGCGAATTTGCTGGTCTGT
AAAGGTTAACCCATCGCCAAAAAAACGAAAAGCGCGAGTATTCTTGATTC
GTATTATCAATGCTTGAATTAAACATAATACATGTATATATTACACTCAT
AAGTCGTAAAAGCGATGGAGAAAACGCTTGGTGGAAAAATCTAAAATTGT
CTCGACAGAACCAAAAAAATGGGCAAAACAGCGGTGCATAAATAAAATCT
AGTTCTCGAATCTTAATATCGATTGAACTCTGTTGACTTTCGACTGGCGT
ATCTGTCTTTGCTGTTGAGTGCCGATGGCTACAACTGTGGCAACCCCGTC
GAGTGTGAAATGTGTTGTTTGATCCGTCTCTCGTATAGCCTTGAGAAATT
TCCTAGGAGTGAAAAAAAGATGGAAGATTTTCCAAATGTATTCGTCTGTG
GAAATTGTTTGTATCTATATAACGTGTCACTGGAACGCTCTCTTACGATA
TTATATGAGCTTCGAACTACGCACGATGTAAAGAACCGAATCTCTCTCAT
CACGCAGAAACGCCAACATAGCCATTACATTATGCTGGTGTGCGAATGCT
ATCAGCAGTACAAAATTGTTGCAAAAGCTACGCTCCCATAAGGTTTAGCG
CACACTTGGAATTTTTTTTGAGATTGTGTAAAACTCAGAGGCCTCGCCCA
AACGCCGTTCATCGTTAACAAATAGCAAAAAAGTAGGATCGTTGATGCCA
AGAGGCAAGGCGAAGCATGATTATTTATTTTGAACTTCGAACAGCCAGCA
TTCCGAGCTATGCAGTCCACACTTACAAAAACGTTGTACACCACAACCTA
ATACTTGTACGATACCGTCCCTATAAACCGAACTGAGTTTTGCGCGAATT
GGCTTCCTCTCAAGTAGCTTTTGAACCTCACTAAGGTACCCTTTACGCCA
ATACCCATCCCCACCTATGCCCACGTCTTTTGGTGAGAGTACAGTATCCT
GCCTTTGCTTGTCGCCCTCACGCCAACACACGCGCACGCGAACAGCTACC
GTTCCTGGGGGGAAGATTGGCGATCCGGAGGGCTTTGCGCGACGTGGGTA
ACAAGGCCAACACCGCTATTACCCCTGCTGACGCTGGCAGTAGTGGTGTA
GTTACTGCACCTGTCCCTTTAGACAGCACATGCGGGGCGATACTTCACAA
TGAAGCCGGCGCGCCGCTGCTGCCTGAGGGCATGTCTGCTTCGATCAGCC
ACAAGCATCACCTTGCTGTAGCGCTCGTTCAAAAGGCTGGTGCTCCTGGG
CACTTGGGTGCGTTGCGTACACGACTCCCTGTGATAGCAGTGCCAACGTT
GATCGTGTATGGTACGGGGCCTTGTGCAGAGCCGTCACTGTTCCCTGAGT
CGCTGGAAATCCACCGCAAATGCAAGTTCAATTACGGACCCTGTACTCCA
CCCCTCAACCAAAGCTGTAGAAGTAAAGCAGGGGTATTTACGGTGCTATG
CCCTTTCTATGGCAATACTTTGTCCGCGGGGGGGGGTACTTTAATATGCC
CAAATAGGTGCTACCTTCTGTATTTGCTGCGGAGCGGAATTTGAAAGGGT
TCAAGAATTGAACATGAGCACATGCGCCAAAGAATAATTTAATGCCACTC
TCTCCTGTGTCTTTAAAATGCTGTGCTTACTCGTGGACCAAGGTGTGGAT
ATTGAGCTGCCGGCGGTACGAAGGCGGGCTGATCTACGGCGACGGGTGTT
GACGCAGCAGGAGGTCGATAACCTGGGAGGCGTGTCTGGTCTGTCGGAAG
AGGAGGACGTGCTCTTGAGGTTTTCCATGAAAGAGGCGGTGTATAAAGCG
GCACACCCTGTCCTTCGTCGACCTCTAGTGTTCAAAGACGTGAGTTGCGC
ATTGTACTTACAAAATTCATCAGTTTAGAGTATACAGTGTGTAAATATTA
GGGGACAAATTTATATTATATATATATATATATATATATATGCAAGTGGT
TCGCTCATGTGAGGAGCAACAGTAAAGTGTATCTGTCGCACAATTCAGTG
TTGCCCGTTGGCTGAGGGGAAAATAGTTGAATAGTTGGTGATTTTTTTAG
TGTCCTTCGGCCAATTTGAGGCAAAATCACTCCTGCGTCAACTCGTTGAA
CGGTTTGATCGACTCTGGGTTAGAACGGCATGTCCTCCAAAGAACGGGCC
AAAACCTGCCTGCATACGCACGTTTTTCGAACAAACGATGGCACTCTTGA
AAAGCCTCCTGCGGTGGCGAACGTTCAACCCGTTCGGTCTTTGATGTGGC
GATTGTGATTGCTTAAGCGATGCAATGTTCATGCACACCACACTACAAGT
ATGGTGGCCTTGTCTATGCTGTCTGGCCCAGAATTCCAGATCTACGTAAA
AGTGAGGTTTCTGTGTTGGTCCAACCTGTACGCTGTTGCAGGGGTGTCTA
CATGTATCTCCGACTGAGCTTGTGTTGTCTTCGTGAAGTTGTTCCTGTAC
GTTGAAAGTTATTTCATTTTCCGGCGTTTGAGATTTTTGTGTTGTGTCCG
TTACCTCAAAAACAGGTGGAAGTGCAGCCCAAGTCGGACGGAAGCTGCGA
GGTTCACACTACAAAACCCGGGGCTTGGGGAAATTTGAGCCTTTTAGCGG
GATGGGTGCGGATCGAGGATGTATTAGGGCAACCTCTGCTTTTGACGTAC
TGCAAAGCGGTCGAGTCCCCGCAACAATAGCACCAACTCAATGATGTCTA
TGCCATTCGCTGCAGAGGCATTTCTCAGAGCTTCACTTTGATCCCCATGT
GCGGTGTCAAGCTGCTACACATGTGGAGTGCATCGAACAGTGAAATATTT
GGTTTGGTTTTTATTTCCGTGTAAAGACATGATACAGATGGTACAGGTGC
AATTTATTTGTGGGAAGTAATCGATATAGGACACATCGCGACATGATTGT
GTCCAATCGAAACGCAATACTCAAGAGCGCATAAATTTTCCGTCGTCACC
CTCGACCGCAGCGTGTCTTGCGTAGCCGGAAAGCTTGCCATTTTGTGGTG
GGCAGACCCGCTTGACCAGCGAATGCGCAACTGATGCCGTGGGAGTCGCG
GGTATCTCGTGAAATATCCTTGTTGCTTGACTGAAGCACCATGCATCGGG
CTACGATTCCATGTTGTTCGTATCCTGACAGCGCTCACTTCTATTTAATT
GGTATTCATGGTTGGTTTACCTGCGTTACTCCTGTCCAGAGGGTGGGCTT
TTATGCAGGATCTGCAAAGCTAGTACTCATATTGCCTCTGTTCAGAGAGC
TGGTTAATTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig116:33821..40531+

>mRNA_H-paniculata_contig116.1032.1 ID=mRNA_H-paniculata_contig116.1032.1|Name=mRNA_H-paniculata_contig116.1032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2262bp|location=Sequence derived from alignment at H-paniculata_contig116:33821..40531+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGCGTCGGGACAGCATATGCCCTTGGGCAACCGCTGGGCTTCTCAT
GCTAGTGCTTTCCAAGCATCCCGCTCTTTCTCTGATCATTGCGGTCCGCC
AGCTGCACATTTCTCGAGGCCCAACCCATCGTCCTCACCGAAGTTGCCAC
TTGCACCCCCGCGCAACTTCTTGCAGAAGCCACACTAACGACCAGTGTGC
AGATTATGGATTGCATCGCTCTGCGGTAGGAAGCATTAGGGAAGGGAAGC
AACGGAGAGGACTTCGTCGCGCGCGTTCGTGGATGCTTGATGCTGCTGAC
TTGAAGGGTCAGTCGATCTCTTTCGCTAGTGCGAGGGCTGCGCCCGCAGC
GGCTTTGCGTACTGCCATGGACACCTACTTGCCGTTTGGGAGATTGGTTG
GTGTGGAGCTACCTGTGAAAATTACGGAAGAGGCTATGCGAGTCGCGAGC
GCTGAGCTCATGCCAGAGGAGGTGTCTTATTGTCTGGGGCTTCACCCGGC
AATGCAGATGAGGCGTCGGGACAGCATATGCCCTTGGGCAACCGCTGGGC
TTCTCATGCTAGTGCTTTCCAAGCATCCCGCTCTTTCTCTGATCATTGCG
GTCCGCCAGCTGCACATTTCTCGAGGCCCAACCCATCGTCCTCACCGAAG
TTGCCACTTGCACCCCCGCGCAACTTCTTGCAGAAGCCACACTAACGACC
AGTGTGCAGATTATGGATTGCATCGCTCTGCGGTAGGAAGCATTAGGGAA
GGGAAGCAACGGAGAGGACTTCGTCGCGCGCGTTCGTGGATGCTTGATGC
TGCTGACTTGAAGGGTCAGTCGATCTCTTTCGCTAGTGCGAGGGCTGCGC
CCGCAGCGGCTTTGCGTACTGCCATGGACACCTACTTGCCGTTTGGGAGA
TTGGTTGGTGTGGAGCTACCTGTGAAAATTACGGAAGAGGCTATGCGAGT
CGCGAGCGCTGAGCTCATGCCAGAGGAGGTGTCTTATTGTCTGGGGCTTC
ACCCGGCAATGCAGCTACCGTTCCTGGGGGGAAGATTGGCGATCCGGAGG
GCTTTGCGCGACGTGGGTAACAAGGCCAACACCGCTATTACCCCTGCTGA
CGCTGGCAGTAGTGGTGTAGTTACTGCACCTGTCCCTTTAGACAGCACAT
GCGGGGCGATACTTCACAATGAAGCCGGCGCGCCGCTGCTGCCTGAGGGC
ATGTCTGCTTCGATCAGCCACAAGCATCACCTTGCTGTAGCGCTCGTTCA
AAAGGCTGGTGCTCCTGGGCACTTGGCTACCGTTCCTGGGGGGAAGATTG
GCGATCCGGAGGGCTTTGCGCGACGTGGGTAACAAGGCCAACACCGCTAT
TACCCCTGCTGACGCTGGCAGTAGTGGTGTAGTTACTGCACCTGTCCCTT
TAGACAGCACATGCGGGGCGATACTTCACAATGAAGCCGGCGCGCCGCTG
CTGCCTGAGGGCATGTCTGCTTCGATCAGCCACAAGCATCACCTTGCTGT
AGCGCTCGTTCAAAAGGCTGGTGCTCCTGGGCACTTGGGTGTGGATATTG
AGCTGCCGGCGGTACGAAGGCGGGCTGATCTACGGCGACGGGTGTTGACG
CAGCAGGAGGTCGATAACCTGGGAGGCGTGTCTGGTCTGTCGGAAGAGGA
GGACGTGCTCTTGAGGTTTTCCATGAAAGAGGCGGTGTATAAAGCGGCAC
ACCCTGTCCTTCGTCGACCTCTAGTGTTCAAAGACGTGTGGATATTGAGC
TGCCGGCGGTACGAAGGCGGGCTGATCTACGGCGACGGGTGTTGACGCAG
CAGGAGGTCGATAACCTGGGAGGCGTGTCTGGTCTGTCGGAAGAGGAGGA
CGTGCTCTTGAGGTTTTCCATGAAAGAGGCGGTGTATAAAGCGGCACACC
CTGTCCTTCGTCGACCTCTAGTGTTCAAAGACGTGGAAGTGCAGCCCAAG
TCGGACGGAAGCTGCGAGGTTCACACTACAAAACCCGGGGCTTGGGGAAA
TTTGAGCCTTTTAGCGGGATGGGTGCGGATCGAGGATGTATTAGGGCAAC
CTCTGCTTTTGACGTACTGCAAAGCGGTCGAGTCCCCGCAACAATAGGTG
GAAGTGCAGCCCAAGTCGGACGGAAGCTGCGAGGTTCACACTACAAAACC
CGGGGCTTGGGGAAATTTGAGCCTTTTAGCGGGATGGGTGCGGATCGAGG
ATGTATTAGGGCAACCTCTGCTTTTGACGTACTGCAAAGCGGTCGAGTCC
CCGCAACAATAG
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