mRNA_H-paniculata_contig39773.10315.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig39773.10315.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 102 bits (255), Expect = 1.570e-22 Identity = 66/175 (37.71%), Postives = 97/175 (55.43%), Query Frame = 1
Query: 1 ALESAIEEARTEGLPSNGVAELRKIVMNSHFHAFRRALSGDPPADVEPLRVHVPAESRPGGRAQCRATRRN-----------------VWINIFTKLAQA--------GMKDTYRMVGDYHAVNNLIAPSAMPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQAQEIFTMV 450
AL+ A++ A GL G+ LR++V + F+ FRR + GDPPA+V P+ V + ++P +A+ R + V++N+ A A G K TYR VGD+ AVN I S PMP+LE + ++ A+ + +LD+LQGYW MPL P+AQEIFTM+
Sbjct: 601 ALDRAVDSAADAGLSPWGLDRLRQVV-DRRFNVFRRGVRGDPPANVPPMTVKLKTGAKPV-KARLRTYNPDKTKWLTTCLAALVALGLVYVNLQAIWASAIMLTPKRSGDKVTYRFVGDFRAVNRQIEKSPGPMPDLEADMQRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMI 773
BLAST of mRNA_H-paniculata_contig39773.10315.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 3.610e-19 Identity = 64/164 (39.02%), Postives = 86/164 (52.44%), Query Frame = 1
Query: 4 LESAIEEARTEGLPSNGVAELRKIVMNSHFHAFRRALS-GDPPADVEPLRVHVPAESRP-GGRAQCRATRRNVWI--------NIFTKLAQAGM----KDTYRMVGDYHAVNNLIAPSAMPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQAQEIFTMVT 453
L+SA+ A GL V LR I+ + ++AFRR L GDPPA+VEPLRV + +RP R + + W+ N+ A A M K YR+V D+ A N + MPN E ++ A + +LDLLQ YWQ PL P+AQEIFT+ T
Sbjct: 710 LDSAVSSAAAAGLEEPHVGRLRGII-SERWNAFRRGLRHGDPPANVEPLRVTLKPGARPVKARPRVYNPIKTAWLAGLGLVFLNMQAVWASAAMATPKKGGYRLVSDFRAANKQVEKVPGVMPNPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIAT 872
BLAST of mRNA_H-paniculata_contig39773.10315.1 vs. uniprot
Match: A0A2P4Y0M2_9STRA (CRN2-like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y0M2_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 2.340e-16 Identity = 52/151 (34.44%), Postives = 81/151 (53.64%), Query Frame = 1
Query: 1 ALESAIEEARTEGLPSNGVAELRKIVMNSHFHAFRRALSGDPPADVEPLRVHVPAESRPGGRAQCRATRRNVWINIFTKLAQAGMKDTYRMVGDYHAVNNLIAPSAMPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQAQEIFTMVT 453
AL + I+EAR GLP + + L++++ + FR A DPP V PL++ + +RP + +A RR W + ++ Y M D A N L P PM +LE + G+ + TLD +GYWQ+PLD ++QE+FT++T
Sbjct: 39 ALAAKIDEARQAGLPPDCINTLQQLLAR-YCDVFRLAFGNDPPVKVPPLKLRLKVGARP---VKAKARRR--WASA-PRIVAKKQPGEYCMTVDSRAANALTEPMLWPMTDLEADLASVEGSEDYFTLDWWRGYWQLPLDEESQEMFTIIT 182
BLAST of mRNA_H-paniculata_contig39773.10315.1 vs. uniprot
Match: H3H5L7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5L7_PHYRM) HSP 1 Score: 82.8 bits (203), Expect = 1.510e-15 Identity = 55/175 (31.43%), Postives = 83/175 (47.43%), Query Frame = 1
Query: 1 ALESAIEEARTEGLPSNGVAELRKIVMNSHFHAFRRALSGDPPADVEPLRVHVPAESRPGGRAQCRA------------------------TRRNVWINIFTKLAQAGMKDTYRMVGDYHAVNNLIAPSAMPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQAQEIFTMVT 453
ALE I+EAR GL S +L++++ H FR + DPP V PLRVH+ +RP +A+ R R+ W + ++ YRM D AVN L P PMP++E + + + T+D +GYWQ+PLD +QE++T++T
Sbjct: 617 ALELKIQEARANGLTSKEGDDLQELLFR-HIDVFRLSFGDDPPVRVPPLRVHLKEGARPV-KAKARRYPPDHKRYLEEHIEELVRHGLVKKNHRSRWASA-PRIVAKRKPGEYRMTVDTRAVNALTEPMPWPMPDIEADLAQVEDSEAYFTIDWWRGYWQLPLDEDSQELYTIMT 788
BLAST of mRNA_H-paniculata_contig39773.10315.1 vs. uniprot
Match: H3GWP3_PHYRM (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GWP3_PHYRM) HSP 1 Score: 80.1 bits (196), Expect = 1.260e-14 Identity = 55/171 (32.16%), Postives = 84/171 (49.12%), Query Frame = 1
Query: 16 IEEARTEGLPSNGVAELRKIVMNSHFHAFRRALSGDPPADVEPLRVHVPAESRPGGRAQCRATRRN-------------------VWINIFTKLAQAG------MKDTYRMVGDYHAVNNLIAPSAMPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQAQEIFTMVT 453
++EAR GLPS+ V L+++++ + FR A DPP V PL++ + +RP + +A R V+IN ++ A A YRM D A+N L P PM +LE G+ + TLD +GYWQ+PLD ++QE+FT++T
Sbjct: 573 VQEAREAGLPSDCVETLQQLLVR-YCDIFRLAFGNDPPIKVPPLKIRLKQGARP---VKAKARRYPPLHREYLEKHLNELLDHGLVYINHRSRWASAPRIVAKKQPGEYRMTVDTRAINVLTDPMLWPMTDLEADLASAEGSEDYFTLDWWRGYWQLPLDEESQELFTIIT 739
BLAST of mRNA_H-paniculata_contig39773.10315.1 vs. uniprot
Match: A0A225W4Z3_9STRA (CCHC-type domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W4Z3_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 1.290e-14 Identity = 54/171 (31.58%), Postives = 84/171 (49.12%), Query Frame = 1
Query: 1 ALESAIEEARTEGLPSNGVAELRKIVMNSHFHAFRRALSGDPPADVEPLRVHVPAESR-----PGGRAQCRA-------------TRRNVWINIFTKLA--QAGMKDTYRMVGDYHAVNNLIAPSAMPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQAQEIFTMVT 453
ALE ++EA GLPSN +LR+++ + FR + DPP V PLR P +++ P + R+ W + +A +AG YRM D HA+N L P PMP++E + + + T+D +GYWQ+PLD +QE++T++T
Sbjct: 648 ALELKLQEATRNGLPSNESEQLRQLLFR-YIDVFRLSFRNDPPVRVPPLRKERPVKAKARRYPPDHKRYLDXXIRELVEHGLVVENHRSRWASAARIVAKREAGQ---YRMTIDTHAINALTEPMPWPMPDIESDLAMVEDSDSYFTIDWWRGYWQLPLDEDSQELYTIMT 814
BLAST of mRNA_H-paniculata_contig39773.10315.1 vs. uniprot
Match: F0W7B6_9STRA (PREDICTED: similar to OSJNBa0011F23.1 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W7B6_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 2.340e-14 Identity = 49/155 (31.61%), Postives = 77/155 (49.68%), Query Frame = 1
Query: 4 LESAIEEARTEGLPSNGVAELRKIVMNSHFHAFRRALSGDPPADVEPLRVHVPAESRPGGRAQCRATRRNVWINIFT-----KLAQAGMKDTYRMVGDYHAVNNLIAPSAMPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQAQEIFTMVT 453
L+S +EE + G + V L ++V+ + + FR + DPP V L+V + P R TR N+ + T ++ YRM D AVN P + PMP+LE + + GA + +LD + YWQ+PLD +++ FT+VT
Sbjct: 121 LKSRLEEVKAAGASKSSVDRL-ELVLAKYENVFRVEFAADPPVKVPALKVRLKEGVEPIMAGSRRKTRFNLSQSRLTLGSAPRIVSKKETGDYRMTVDLRAVNAATVPMSWPMPHLEVLLASLEGAKCYFSLDCFRFYWQLPLDKDSRDYFTVVT 274
BLAST of mRNA_H-paniculata_contig39773.10315.1 vs. uniprot
Match: A0A6H5JCK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK9_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 3.140e-14 Identity = 61/171 (35.67%), Postives = 85/171 (49.71%), Query Frame = 1
Query: 4 LESAIEEARTEGLPSNGVAELRKIVMNSHFHAFRRALS-GDPPADVEPLRVHV-----PAESRP--------GGRAQCRATR---RNVWINIFTKLAQAGM----KDTYRMVGDYHAVNNLIAPSAMPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQAQEIFTMVT 453
L+SA+ A GL V LR I+ ++AFR + GDPPA+VEPLRV + P ++RP A C A+ V++N+ A A M K YR++ D+ A NN + MPN E + +LDLL+ Y Q PL P+AQ+IFT+ T
Sbjct: 484 LDSAVSSAVVAGLDEPHVGRLRSII-RERWNAFRPGMRPGDPPANVEPLRVTLKPGALPVKARPRTYNPIKTAWLAGCMASPVVLGLVFLNMQAVSASAAMATPKKGGYRLLSDFRAANNQVEKVPGVMPNPEASMAQFSATKFHGSLDLLRAYCQRPLSPEAQKIFTIAT 653
BLAST of mRNA_H-paniculata_contig39773.10315.1 vs. uniprot
Match: A0A6G0SHA0_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0SHA0_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.500e-13 Identity = 54/172 (31.40%), Postives = 80/172 (46.51%), Query Frame = 1
Query: 4 LESAIEEARTEGLPSNGVAELRKIVMNSHFHAFRRALSGDPPADVEPLRVHVPAESRP--GGRAQCRATRRNVWINIFTKLAQAGM--------------------KDTYRMVGDYHAVNNLIAPSAMPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQAQEIFTMVT 453
L ++EA G ++ ELR+IV++ + FR L D PADVEPL V + A ++P G + +R + +L AG+ +R+ DY VN + P A PNL + + GA F D +G+WQMPL P +QE+F+ VT
Sbjct: 485 LHRLVDEAIEGGFDADHGDELRRIVID-YADVFRLRLGHDEPADVEPLEVRLEAGAQPYRSGVRRYPEAQRQFLRDYVRELESAGLVVRNNQSPWSCPALPVAKRGSGEFRITIDYRPVNRMTVPLAGAAPNLAVVVESVRGAYGFGAFDFHKGFWQMPLHPNSQEMFSFVT 655
BLAST of mRNA_H-paniculata_contig39773.10315.1 vs. uniprot
Match: A0A225V3N5_9STRA (RNA-directed DNA polymerase (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V3N5_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 2.080e-13 Identity = 52/173 (30.06%), Postives = 78/173 (45.09%), Query Frame = 1
Query: 4 LESAIEEARTEGLPSNGVAELRKIVMNSHFHAFRRALSGDPPADVEPLRVH-----VPAESRPGGRAQCRA----------------TRRNV--WINIFTKLAQAGMKDTYRMVGDYHAVNNLIAPSAMPMPNLEEIGRGMAGASVFCTLDLLQGYWQMPLDPQAQEIFTMVT 453
L I+ A GLP A + + ++ +R A+S DPPA VEPLRV VP S P A +A + N W + + G +D +R+ DY VN + P A MP+ + + G VF +D G+WQ+PL +++EIF+ +T
Sbjct: 482 LNQLIDRAVANGLPQEHAAVVSDM-LSQFSDIWRDAVSSDPPARVEPLRVTLKSGAVPHRSPPRKYAPLQAQFIREYVKSLVDNNLVAKNNASRWACAVVPVRKPGSRDKFRLTIDYRPVNRVTIPIAGAMPSAATMAEALEGKKVFGNMDFTHGFWQLPLAEESREIFSFIT 653 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39773.10315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig39773.10315.1 >prot_H-paniculata_contig39773.10315.1 ID=prot_H-paniculata_contig39773.10315.1|Name=mRNA_H-paniculata_contig39773.10315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp ALESAIEEARTEGLPSNGVAELRKIVMNSHFHAFRRALSGDPPADVEPLRback to top mRNA from alignment at H-paniculata_contig39773:17..523- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig39773.10315.1 ID=mRNA_H-paniculata_contig39773.10315.1|Name=mRNA_H-paniculata_contig39773.10315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=507bp|location=Sequence derived from alignment at H-paniculata_contig39773:17..523- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig39773:17..523- >mRNA_H-paniculata_contig39773.10315.1 ID=mRNA_H-paniculata_contig39773.10315.1|Name=mRNA_H-paniculata_contig39773.10315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig39773:17..523- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |