mRNA_H-paniculata_contig3977.10311.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3977.10311.1
Unique NamemRNA_H-paniculata_contig3977.10311.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3977.10311.1 vs. uniprot
Match: D7FP39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP39_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.240e-6
Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = -3 
Query:    1 GKTLFKY--GQLRMQYVLEKRCGEAGSLGPRDLLIIQPTSIGKGMDSKFME 147
            G T  +Y  GQLRM+Y+L KR G+    GP DLLI+QPTSIG G+D+ F+E
Sbjct:  528 GGTDLRYYGGQLRMKYLLSKRRGQVEEAGPEDLLILQPTSIGAGIDAGFLE 578
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BLAST of mRNA_H-paniculata_contig3977.10311.1 vs. uniprot
Match: A0A6H5KRI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI8_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.460e-5
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = -3 
Query:    1 GQLRMQYVLEKRCGEAGSLGPRDLLIIQPTSIGKGMDSKFME 126
            GQLRM+Y+L KR  +    GP D+LI+QPTSIG G+D+ F+E
Sbjct:  273 GQLRMKYLLSKRRSQVEEAGPEDVLILQPTSIGAGIDAGFLE 314
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3977.10311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP39_ECTSI1.240e-656.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRI8_9PHAE2.460e-557.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3977contigH-paniculata_contig3977:342..889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size550
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930216.8752532-CDS-H-paniculata_contig3977:341..6921622930216.8752532-CDS-H-paniculata_contig3977:341..692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3977 342..692 +
1691481195.3714352-CDS-H-paniculata_contig3977:341..6921691481195.3714352-CDS-H-paniculata_contig3977:341..692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3977 342..692 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930216.893343-UTR-H-paniculata_contig3977:692..8891622930216.893343-UTR-H-paniculata_contig3977:692..889Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3977 693..889 +
1691481195.382171-UTR-H-paniculata_contig3977:692..8891691481195.382171-UTR-H-paniculata_contig3977:692..889Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3977 693..889 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3977.10311.1prot_H-paniculata_contig3977.10311.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3977 342..692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3977.10311.1

>prot_H-paniculata_contig3977.10311.1 ID=prot_H-paniculata_contig3977.10311.1|Name=mRNA_H-paniculata_contig3977.10311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
LHELGVHPLADAGGLYDQQVSWSEATRLATPLLEHILHPQLAVLKQGFSA
LHLLLLFLTSLVCLRASAILTLTFIYTTSTAVRRRRRRWRRASPFVFFFR
RHSARCRQSDSRTLAP*
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mRNA from alignment at H-paniculata_contig3977:342..889+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3977.10311.1 ID=mRNA_H-paniculata_contig3977.10311.1|Name=mRNA_H-paniculata_contig3977.10311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=548bp|location=Sequence derived from alignment at H-paniculata_contig3977:342..889+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCATGAACTTGGAGTCCATCCCCTTGCCGATGCTGGTGGGCTGTATGA
TCAGCAAGTCTCGTGGTCCGAGGCTACCCGCCTCGCCACACCGCTTCTCG
AGCACATACTGCATCCGCAATTGGCCGTACTTAAACAAGGTTTTTCCGCG
CTGCATCTGCTTCTCCTCTTCTTGACCAGTCTTGTCTGCCTCCGTGCCTC
CGCCATTCTTACTCTTACCTTCATCTATACAACAAGCACCGCCGTGCGGC
GGCGGCGGCGGCGGTGGCGACGAGCTTCGCCCTTCGTCTTTTTTTTCCGT
CGCCATTCTGCCCGGTGCCGCCAAAGCGACTCCCGTACTTTGGCACCTTA
AGGTACTCCTCATTGTAACGTTGCCACCACTGTCGTTGTCTTTGTCCTTG
TCCTTGTCGCCGTTGCCATCGCTGGGTGTACGGACGTTATTGATGGCGTT
ATCGCTGTGGGTGGCCAAGGCGCGCCGGAAAGAAGACGGGAGACGGAGTG
TCTGCGAGCGATGCTGCTCCCGCGGCGGCGGCAGCGGCGGCTGTTTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig3977:342..889+

>mRNA_H-paniculata_contig3977.10311.1 ID=mRNA_H-paniculata_contig3977.10311.1|Name=mRNA_H-paniculata_contig3977.10311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig3977:342..889+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCATGAACTTGGAGTCCATCCCCTTGCCGATGCTGGTGGGCTGTATGA
TCAGCAAGTCTCGTGGTCCGAGGCTACCCGCCTCGCCACACCGCTTCTCG
AGCACATACTGCATCCGCAATTGGCCGTACTTAAACAAGGTTTTTCCGCG
CTGCATCTGCTTCTCCTCTTCTTGACCAGTCTTGTCTGCCTCCGTGCCTC
CGCCATTCTTACTCTTACCTTCATCTATACAACAAGCACCGCCGTGCGGC
GGCGGCGGCGGCGGTGGCGACGAGCTTCGCCCTTCGTCTTTTTTTTCCGT
CGCCATTCTGCCCGGTGCCGCCAAAGCGACTCCCGTACTTTGGCACCTTA
ACTCCATGAACTTGGAGTCCATCCCCTTGCCGATGCTGGTGGGCTGTATG
ATCAGCAAGTCTCGTGGTCCGAGGCTACCCGCCTCGCCACACCGCTTCTC
GAGCACATACTGCATCCGCAATTGGCCGTACTTAAACAAGGTTTTTCCGC
GCTGCATCTGCTTCTCCTCTTCTTGACCAGTCTTGTCTGCCTCCGTGCCT
CCGCCATTCTTACTCTTACCTTCATCTATACAACAAGCACCGCCGTGCGG
CGGCGGCGGCGGCGGTGGCGACGAGCTTCGCCCTTCGTCTTTTTTTTCCG
TCGCCATTCTGCCCGGTGCCGCCAAAGCGACTCCCGTACTTTGGCACCTT
AA
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