mRNA_H-paniculata_contig3975.10308.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3975.10308.1
Unique NamemRNA_H-paniculata_contig3975.10308.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3975.10308.1 vs. uniprot
Match: D7FPU9_ECTSI (BZIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPU9_ECTSI)

HSP 1 Score: 345 bits (885), Expect = 4.210e-105
Identity = 255/515 (49.51%), Postives = 301/515 (58.45%), Query Frame = 2 
Query:  893 AEDRKARNRERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTEHHTAGVLLALSCSPNRCIQGRVGGASDSSTRTPQAVAPVP-------------GRDWNRELALHEETLHKITKEFESMDGGQHAGEEGCGGVLDDSSTGRRSVGGSIGKGGDSSRGAASRGTLADRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLKAEIRASGIHLPEAPNNPAAGQDMVPEEPLPEYLAALLEFAEGKAQSPCAASSAASAA-------------LTVPRAPKSPSVF----SRQSS---------------------------------------ASSLTVSSSRCVDTNAPVPPALEPKSNA----------PGQALEDAGKLCAFMEAAQSRSAKRIRVVGQ-------DGSDSSITG----ARARIWSDHGSTTSESRGSSESGDEISTCGQREAADAA----LLLASRGARKNDDGSLSSPAFWTSRQVLERYVLPRQ 2155
            A DRKARNRERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLST+H TAGVLLALSCSP +C +G  G    SS  +P    P               GRDW  E+A HE+ L KIT+EFE MDG Q AG++      ++++T     GG    G   SRGA  +GTL+DRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQL+ EIRASGI LPE  N     ++ +PEEPLPEYLAAL +FAEGK+ S   A  +  A+             ++ P  P+ PS      SRQ+S                                       A S+ +S    +   A   PA+ P + A          PGQALEDA  LCAFMEAAQ+RS KR+RV  Q       DG+ S+ +     A+ R WSD GSTTSESRG S+  +E     +R++AD +    L          D G++  P FWTSRQVLERYVLPRQ
Sbjct:   80 AADRKARNRERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTDHRTAGVLLALSCSPKQCQEGPAGSQHPSSRSSPALKLPKAAATPAASRSSKGSGRDWGEEVASHEDALRKITQEFERMDGSQQAGDD------EEAAT---HAGGKXXXG---SRGA--KGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLEHEIRASGIQLPED-NWAEEVRETIPEEPLPEYLAALWDFAEGKSHSTSKAPGSGVASXXXXXXXXXXXXPVSPPATPRMPSAGAFRQSRQTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPXRPXSPPLAGSMAMS---VLSEQASKQPAVAPATAAGADPVAAASNPGQALEDASALCAFMEAAQTRSVKRVRVAPQQQXXXRKDGNTSTESAKQMQAQPRGWSDQGSTTSESRGGSDLSEE-DAANERKSADGSGASTLSXXXXXXSSRDSGAVLPPEFWTSRQVLERYVLPRQ 575
[Close]
BLAST of mRNA_H-paniculata_contig3975.10308.1 vs. uniprot
Match: A0A6H5L2A4_9PHAE (BZIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A4_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 2.080e-59
Identity = 129/209 (61.72%), Postives = 141/209 (67.46%), Query Frame = 2 
Query:  893 AEDRKARNRERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTEHHTAGVLLALSCSPNRCIQGRVGGASDSSTRTPQAVAPVPG-------------RDWNRELALHEETLHKITKEFESMDGGQHAGEEGCGGVLDDSSTGRRSVGGSIGKGGDSSRGAASRGTLADRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKM 1480
            A DRKARNRERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLST+HHTAGVLLALSCSP +C +G  G    SS  +P    P                RDW +E+A HE+ L KIT+EFE MDG Q AG+               S               A++GTL+DRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKM
Sbjct:   81 AADRKARNRERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTDHHTAGVLLALSCSPQQCQEGPAGNQHQSSRSSPALKLPKAAATPAASRSSKGSSRDWGQEVASHEDALRKITQEFERMDGSQQAGDXXXXXXXXXXXXXXXS--------------RAAKGTLSDRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKM 275
[Close]
BLAST of mRNA_H-paniculata_contig3975.10308.1 vs. uniprot
Match: A0A6U4EHK2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EHK2_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.420e-13
Identity = 79/233 (33.91%), Postives = 110/233 (47.21%), Query Frame = 2 
Query:  917 RERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTEHHTAGVLLALSCSPNRCIQGRVGGASDSSTRTP------QAVAPVPGRDWNRELALHEETLHKITKEFESMDGGQHAGEEGCGGVLDDSSTGRRSVGGSIGKGGDSSRGAASRGTLADRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLKAEIRASGIHLPE--------APNNPAAGQDM 1573
            RERNR+HARKTRQRKKQ ++ELQ +I  L+ E   L Q   + +TA VLL +S   +R    ++    +   R         A A  P  +   +  L +ET     K+++    G++  EE                                      R  +RRERNRMHAKRTR+RKKLF+E    +I KM+ EN Q++  +R SG+ LPE        A  +P +G DM
Sbjct:  177 RERNRMHARKTRQRKKQQMKELQARIDKLKHEGTLLRQHIFDRYTANVLLVMSGKADRSETSQLSKLEEVMDREGINCLLGAASALQPRLEMTADGKL-KETAPDEDKDYKPRRRGKYTPEE--------------------------------------RDRVRRERNRMHAKRTRDRKKLFLEESENLIFKMEEENVQMRRYLRQSGLELPEQLLREEAEAAAHPDSGDDM 370
[Close]
BLAST of mRNA_H-paniculata_contig3975.10308.1 vs. uniprot
Match: A0A835ZF21_9STRA (BZIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF21_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.310e-12
Identity = 87/268 (32.46%), Postives = 121/268 (45.15%), Query Frame = 2 
Query:  890 SAEDRKARNRERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTEHHTAGVLLALSCSPNRCIQGRVGGASDS------------STRTPQAVAPVPGRDWNRELALHEETLHKITKEFESMDGGQHAGEEGCGGVLDDSSTGRRSVGGSIGKGGDSSRGAASRGTLADRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLKAEIRASGIHLPEA-----------PNNPAAGQDMVPEEPLPEYLAALLEFA 1624
            S +DR+ R+RERNRLHARKTRQRKK  ++ LQ +I  L++E   L +   E    G L AL  S    +   V  A  +            S     A+A     DW  +L+ H   L  +     +MD    A        L D++   R+                    L  R  LRRERNRMHAKR R+RKKL V+A + ++  +   NA  +A +R + + LP A           P++P A  D    +PLPE +  L E+A
Sbjct:   20 SVDDRRKRSRERNRLHARKTRQRKKAQIESLQDRIRALKREGDLLHKQQKEQEVLGTL-ALMQSHAAAVPAAVAAAHGAQPPQDEAHMGKISELAQAAIAVWAEADWAAQLSEHCAALTALMNLCNTMDSQYMAS-------LSDAAAAERAXXXXXXXXXXXXXXXXXXAAL--RAQLRRERNRMHAKRARDRKKLLVDASTAIVGVLDARNALARAHLRRAALSLPPALAATLSTAAAAPSSPYAEDDAA-SDPLPEDVFELWEYA 276
[Close]
BLAST of mRNA_H-paniculata_contig3975.10308.1 vs. uniprot
Match: A0A7S2REX0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REX0_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.330e-11
Identity = 77/224 (34.38%), Postives = 110/224 (49.11%), Query Frame = 2 
Query:  875 KRKRMSAEDRKARNRERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTEHHTAGVLLALSCSPNR------CIQGRVGGASDSSTRTPQAVAPVPGRDWNRELALHEETLHKITKEFESMDGGQHAGEEGCGGVLDDSSTGRRSVGGSIGKGGDSSRGAASRGTLADRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLKAEIRASGI 1528
            KR+R+S+E+R  R+RERNR+HA+KTRQRKK  ++ LQ +I  L+ E   L Q+  E +TA +LL +S +               G ++  S  T  ++A + GRD + E    EE   K T+                          RR                  + T A+R  +RRERNRMHAKRTR+RKKLF+E     I  M+ ENA+L+  +   G+
Sbjct:  187 KRRRLSSEERLQRSRERNRMHAKKTRQRKKMQIEALQARIDELKTEFLGLRQIVDERYTAYILLVMSGAAENGSGASFLSSSAEGPSTLGSKFTSASLAQIIGRDPDAEDDK-EEAPQKRTR--------------------------RRG-----------------KYTPAEREHIRRERNRMHAKRTRDRKKLFLEESERKIAVMEEENAKLRDFLTRHGM 366
[Close]
BLAST of mRNA_H-paniculata_contig3975.10308.1 vs. uniprot
Match: A0A7S2L7Q6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L7Q6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.330e-10
Identity = 76/220 (34.55%), Postives = 110/220 (50.00%), Query Frame = 2 
Query:  917 RERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTEHHTAGVLLALSCSPNRCIQGRVGGASDSSTRTPQAVAPVPGRDWNRELALHEET-----LHKITKEFESMDGGQHAGEEGCG---GVLDDSSTGRRSVGGSIGKGGDSSRGAASRG-------------TLADRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLKAEI 1513
            RERNR+HARKTRQRKK+H+Q+LQ +   L+ E+ RL Q   E +TA +L+ L  +      G    A+D S  T  AV+  P      E+ L   T       KI +    +  GQH   +      G  +D++    +   + G+G     G    G             T A+   +RRERNRMHAKRTR+RK++F+E    MI +++ ENA L+  +
Sbjct:   18 RERNRMHARKTRQRKKEHMQQLQNRADELKLEQIRLKQCINEKNTANILVGLFQT------GEDSAAADGSDDTETAVSMDP----QVEVLLKRPTEEIPDASKIPELPALILPGQHTKRKSSSSNDGASEDNTPTAAAAPAADGEGVTIPEGEQEDGIDYVLLGKDRGSCTPAELDQIRRERNRMHAKRTRDRKRIFMEEMETMIKQLEDENALLQGHM 227
[Close]
BLAST of mRNA_H-paniculata_contig3975.10308.1 vs. uniprot
Match: A0A6U2ACZ3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2ACZ3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.630e-9
Identity = 71/224 (31.70%), Postives = 106/224 (47.32%), Query Frame = 2 
Query:  917 RERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTEHHTAGVLLALSCSPNRCIQGRVGGASDSSTRTPQ----AVAPVPGRDWNRELAL------HEETLHKITKEFES------MDGGQHAGEEGCG----GVLDDSSTGRRSVGGSIGKGGDSSRGAASRGTLADRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLKAEIRASGI 1528
            RERNR+HARKTRQRKK+H+Q LQ +   L+ E+ RL Q   E +TA +LL +    +R      G A D + +  +    +   +P      EL        H    +K   + +       +DGG   G    G    G++ D       +               S+ T A+   +RRERNRMHAKRTR+RK++F+E   VMI +++ EN  L+  +    +
Sbjct:   32 RERNRMHARKTRQRKKEHMQSLQNRADELKNEQLRLKQAINEKNTASILLGMF---SRDGPASGGSAKDVNPKVEELLRRSAEEIPDASKIPELPALILPGQHNSKKNKAAAQMQPPAAAAPLDGGGLEGSPEMGPQHGGLMPDDGIDYELLSKD-----------RSKCTPAELDRIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLESENGLLQGHLEGLSV 241
[Close]
BLAST of mRNA_H-paniculata_contig3975.10308.1 vs. uniprot
Match: A0A7S4VPU5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VPU5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.210e-9
Identity = 69/212 (32.55%), Postives = 109/212 (51.42%), Query Frame = 2 
Query:  917 RERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTEHHTAGVLLALSCSPNRCIQGRVGGASDSSTRTPQAVAPVPGRDWNRELALHEETLHKITKEFESMDGGQHAGEEGCG---GVLDDSSTGRRSVGGSIGKGGDSSRGA--------ASRGTLADRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLKAEIRA 1519
            RERNR+HARKTRQRKK+H+Q LQ +   L+Q++ +L Q   E +TA +LL + C          G + D   R           D  +  A       KI +    +  GQH+G++  G      ++ +  +     ++   G+ + G          S+ T A+   +RRERNRMHAKRTR+RK++F+E   VMI +++ EN  L++ + +
Sbjct:   11 RERNRMHARKTRQRKKEHMQNLQDRADELKQKQIQLKQTIHEKNTANILLGMFCKEK-------GESGDVDPRV---------EDLLKRSAEDIPDASKIPELPALILPGQHSGKKKMGTSSSAAEEMAMAQHEAILALPVAGNPNDGIDYELLGKDRSKCTPAELDKIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLEGENQVLQSHLNS 206
[Close]
BLAST of mRNA_H-paniculata_contig3975.10308.1 vs. uniprot
Match: A0A7S4W4V3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W4V3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 5.340e-9
Identity = 69/212 (32.55%), Postives = 109/212 (51.42%), Query Frame = 2 
Query:  917 RERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTEHHTAGVLLALSCSPNRCIQGRVGGASDSSTRTPQAVAPVPGRDWNRELALHEETLHKITKEFESMDGGQHAGEEGCG---GVLDDSSTGRRSVGGSIGKGGDSSRGA--------ASRGTLADRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLKAEIRA 1519
            RERNR+HARKTRQRKK+H+Q LQ +   L+Q++ +L Q   E +TA +LL + C          G + D   R           D  +  A       KI +    +  GQH+G++  G      ++ +  +     ++   G+ + G          S+ T A+   +RRERNRMHAKRTR+RK++F+E   VMI +++ EN  L++ + +
Sbjct:   11 RERNRMHARKTRQRKKEHMQNLQDRADELKQKQIQLKQTIHEKNTANILLGMFCKEK-------GESGDVDPRV---------EDLLKRSAEDIPDASKIPELPALILPGQHSGKKKMGTSSSAAEEMAMAQHEAILALPVAGNPNDGIDYELLGKDRSKCTPAELDKIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLEGENQVLQSHLNS 206
[Close]
BLAST of mRNA_H-paniculata_contig3975.10308.1 vs. uniprot
Match: A0A7S4RSS5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RSS5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 7.670e-9
Identity = 69/212 (32.55%), Postives = 109/212 (51.42%), Query Frame = 2 
Query:  917 RERNRLHARKTRQRKKQHVQELQLKIWGLRQERQRLLQLSTEHHTAGVLLALSCSPNRCIQGRVGGASDSSTRTPQAVAPVPGRDWNRELALHEETLHKITKEFESMDGGQHAGEEGCG---GVLDDSSTGRRSVGGSIGKGGDSSRGA--------ASRGTLADRTALRRERNRMHAKRTRNRKKLFVEACSVMIDKMKVENAQLKAEIRA 1519
            RERNR+HARKTRQRKK+H+Q LQ +   L+Q++ +L Q   E +TA +LL + C          G + D   R           D  +  A       KI +    +  GQH+G++  G      ++ +  +     ++   G+ + G          S+ T A+   +RRERNRMHAKRTR+RK++F+E   VMI +++ EN  L++ + +
Sbjct:  183 RERNRMHARKTRQRKKEHMQNLQDRADELKQKQIQLKQTIHEKNTANILLGMFCKEK-------GESGDVDPRV---------EDLLKRSAEDIPDASKIPELPALILPGQHSGKKKMGTSSSAAEEMAMAQHEAILALPVAGNPNDGIDYELLGKDRSKCTPAELDKIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLEGENQVLQSHLNS 378
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3975.10308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FPU9_ECTSI4.210e-10549.51BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L2A4_9PHAE2.080e-5961.72BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6U4EHK2_9STRA1.420e-1333.91Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A835ZF21_9STRA1.310e-1232.46BZIP domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2REX0_9STRA2.330e-1134.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2L7Q6_9STRA3.330e-1034.55Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A6U2ACZ3_9STRA1.630e-931.70Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S4VPU5_9STRA2.210e-932.55Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4W4V3_9STRA5.340e-932.55Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4RSS5_9STRA7.670e-932.55Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3975contigH-paniculata_contig3975:9048..12588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue9.7e-10
Seed eggNOG ortholog35128.Thaps24189
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Basic region leucine zipper
EggNOG OGs2CYZ1@1,2S7C7@2759,2XC3T@2836
Ec32 ortholog descriptionBasic leucine zipper transcription factor
Ec32 orthologEc-18_001760.1
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size2535
Cds size1650
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3975.10308.1prot_H-paniculata_contig3975.10308.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3975 9562..12217 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930216.4864128-UTR-H-paniculata_contig3975:9047..95611622930216.4864128-UTR-H-paniculata_contig3975:9047..9561Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3975 9048..9561 +
1691481195.252342-UTR-H-paniculata_contig3975:9047..95611691481195.252342-UTR-H-paniculata_contig3975:9047..9561Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3975 9048..9561 +
1622930216.5576847-UTR-H-paniculata_contig3975:12217..125881622930216.5576847-UTR-H-paniculata_contig3975:12217..12588Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3975 12218..12588 +
1691481195.2848632-UTR-H-paniculata_contig3975:12217..125881691481195.2848632-UTR-H-paniculata_contig3975:12217..12588Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3975 12218..12588 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930216.5097983-CDS-H-paniculata_contig3975:9561..105271622930216.5097983-CDS-H-paniculata_contig3975:9561..10527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3975 9562..10527 +
1691481195.2691054-CDS-H-paniculata_contig3975:9561..105271691481195.2691054-CDS-H-paniculata_contig3975:9561..10527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3975 9562..10527 +
1622930216.5353606-CDS-H-paniculata_contig3975:11533..122171622930216.5353606-CDS-H-paniculata_contig3975:11533..12217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3975 11534..12217 +
1691481195.277063-CDS-H-paniculata_contig3975:11533..122171691481195.277063-CDS-H-paniculata_contig3975:11533..12217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3975 11534..12217 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3975.10308.1

>prot_H-paniculata_contig3975.10308.1 ID=prot_H-paniculata_contig3975.10308.1|Name=mRNA_H-paniculata_contig3975.10308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=550bp
MVPILSSVECHAVVVITIYLFPTHLLIALSYLRRRHIFQGGYLVSLRTHH
RGQQITQQAVVATAGKMDVIDVAGKLLGLGVADLGAGESGSEDEDACWSR
ADSAASYEGVGSDDEHSANGKRKRMSAEDRKARNRERNRLHARKTRQRKK
QHVQELQLKIWGLRQERQRLLQLSTEHHTAGVLLALSCSPNRCIQGRVGG
ASDSSTRTPQAVAPVPGRDWNRELALHEETLHKITKEFESMDGGQHAGEE
GCGGVLDDSSTGRRSVGGSIGKGGDSSRGAASRGTLADRTALRRERNRMH
AKRTRNRKKLFVEACSVMIDKMKVENAQLKAEIRASGIHLPEAPNNPAAG
QDMVPEEPLPEYLAALLEFAEGKAQSPCAASSAASAALTVPRAPKSPSVF
SRQSSASSLTVSSSRCVDTNAPVPPALEPKSNAPGQALEDAGKLCAFMEA
AQSRSAKRIRVVGQDGSDSSITGARARIWSDHGSTTSESRGSSESGDEIS
TCGQREAADAALLLASRGARKNDDGSLSSPAFWTSRQVLERYVLPRQVC*
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mRNA from alignment at H-paniculata_contig3975:9048..12588+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3975.10308.1 ID=mRNA_H-paniculata_contig3975.10308.1|Name=mRNA_H-paniculata_contig3975.10308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3541bp|location=Sequence derived from alignment at H-paniculata_contig3975:9048..12588+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTTTCCGAGGGCGCGAACGTCAAACAAAGGTAGGCGTATTGCTTGATT
CTGCGGGATTGGCTGGGGTGATAACGTAACATGATTGATCCTGGTGTGTT
GGATGTGTAAAATTAGTTGTCGCGCATCACAGGAAGGGACACGAAACGTA
CAGTGTTGGCTACAAGCAACCACAGAGGTTTTATTATTTCAGAGAACCCA
AGCGAATTCACCTCCTGCGGTGGCTCTTTTCTCTTCGTCGTTCAGGAGGT
CACTCCTATACTTCACACAGATTAGTATGCAGACATACGTCTGTATGGTC
TGGGCTGCTTTATAGCTCATAGGTAGCACGGGTGCTCCTAAGTATGCTGC
TTCGAGCGTGCTGTTTCAGCATGATTCTGTTTTGGTCTGTAACTGACAGG
GCTGTTGTCTAGCGCCCAGTACCTGGCACATTCTTCTCCGTCTGTACGAC
CCATACTCATCACAGCCCAAACCCACACCTCACCATCGCAACGCGAAGTC
TCTCTGCTTGAGGCATGGTACCCATCCTTTCTTCAGTTGAATGTCATGCT
GTCGTTGTTATTACCATCTACCTCTTCCCAACGCACCTATTGATTGCACT
GTCTTATCTTCGACGGCGGCATATTTTTCAGGGTGGATATTTAGTCTCGT
TGCGTACACACCACCGGGGACAGCAGATAACCCAACAGGCAGTGGTGGCG
ACAGCGGGGAAAATGGACGTAATCGACGTAGCAGGGAAGCTTCTTGGGCT
AGGCGTGGCTGATCTAGGGGCAGGGGAGTCTGGGTCAGAGGATGAGGACG
CATGCTGGTCCCGCGCGGACAGTGCCGCTTCGTACGAAGGGGTTGGTAGT
GATGATGAACACAGCGCCAACGGCAAGCGGAAGAGAATGTCTGCAGAAGA
CCGTAAAGCCCGCAACCGGGAGAGGAACCGCCTGCACGCTCGCAAAACGC
GGCAGCGGAAAAAGCAGCATGTTCAAGAGCTGCAGCTAAAGATCTGGGGC
CTCCGCCAGGAGCGTCAGCGATTACTTCAGCTCTCCACGGAGCATCATAC
CGCGGGCGTTCTGCTCGCCCTCAGCTGCTCGCCAAACCGCTGTATCCAAG
GAAGGGTAGGAGGAGCCAGCGACTCCTCCACACGGACCCCGCAGGCCGTC
GCCCCGGTCCCTGGGAGAGATTGGAACCGCGAGCTAGCTTTACATGAAGA
GACCCTACACAAGATAACAAAGGAGTTTGAGAGCATGGATGGCGGGCAGC
ACGCTGGTGAGGAAGGGTGTGGCGGCGTGTTGGACGACAGCAGCACTGGT
CGGCGGAGTGTTGGTGGCTCTATTGGTAAGGGCGGGGACTCTTCGCGCGG
GGCGGCAAGCAGGGGCACTCTGGCGGACAGGACGGCGCTGCGGCGCGAGA
GAAACCGCATGCACGCGAAGCGCACACGTAACCGCAAGAAGCTGTTCGTG
GAGGCTTGCAGCGTCATGATCGACAAGATGGTGAGCGATGTGTTGATTTT
GAATGTGTACTCCCTAAATTATAGATATGTTGAATTCGAGATAGAGACGC
ATCATCATGACACGTGTTTCGTATTTTTGTTCCGCAACACCAGCTGACGT
CAAAATGGAGCATATACTTTGTTGTATCCTTTTCACGACCCCTACCTCCA
TTTTTTCGGCTGCACAACGGATCACAAGCCGAAAGCAGCCAGATGTTGGA
AAAGTTTTTTATCTCGATTATGAACCGCTTGTCCATGCCGCAAGTTTCTG
ACTGCCCGGTCAATGCACGAGTGGCAGTTAGCCGCAATTTGACAAACTGC
AAAAGGAAAAACATGATGCACTCTATACTGAATTGTTTGTATTGCCATTC
AGGAGATCAACACAAACGTTCAAACGTTGTACAACCATTCAGTGTCCGTG
TGCTCGCTCAAATCATCAAGAATGTTTTCTATTTTCAGTGTTTTTCATGG
ACGAGAGTGTACTTCTTAGTGGAATCAGGGACAGCATGAACAGTACGAAA
ATTCAAACCTACCTGATGCACTGTTTTTTTGTCCTCGTGTGATGGCAATA
CGGACTGGCGGAATCGTCCCGTCTGCCAACCATCGTTTGATCACCGTCGC
GCGTTTTGGTCCTTCACGAGTGTTGGTCAACTTGCAGAAAACCTGAGGCA
GATGAACGTTGTACTCTACTGGGTTGCACAGTCGTTTTATACATTCCAGA
AGTAGACACCTTCGAATAGAGTACTGACACGGCGGGTAGTTGATAGCGGT
TCTCACAATCAAATAGTGGACAGTCTTATCCTCTCGTACCATATTCATGT
GAACGCGAACTCAGCCATAAAAACTCGCGAGAACATGCATACGTCACAGT
GCACGGAGTCAAGTAGTACACACCGAGCTCATCGTGTTCCTCTCCATTGC
CCGGTTGCGTTTATTGGTTCAACTTCACGTTTCTCTTGCATCACATCCCG
ACTCCCGACCGACCAACGCGTGTGCCCTACTTGCAGAAAGTCGAAAATGC
TCAGCTGAAGGCCGAAATCCGCGCGTCAGGAATCCACCTCCCAGAAGCCC
CCAACAATCCCGCGGCCGGTCAAGATATGGTCCCTGAAGAGCCCCTGCCA
GAGTACCTCGCTGCTCTGTTGGAGTTTGCCGAGGGAAAAGCTCAATCACC
TTGCGCGGCATCCTCCGCAGCGTCGGCTGCGCTCACGGTACCCAGAGCAC
CGAAGTCACCTTCGGTCTTTTCCCGGCAGTCTTCAGCATCATCGTTGACC
GTTTCTTCCTCCCGTTGCGTCGACACCAACGCGCCGGTGCCGCCAGCACT
CGAGCCCAAATCGAATGCACCTGGCCAGGCTCTCGAGGATGCTGGGAAGC
TTTGCGCATTCATGGAGGCCGCTCAATCGCGATCCGCGAAGCGGATTCGC
GTTGTTGGCCAAGATGGCAGCGACAGCAGTATTACTGGTGCGCGAGCGCG
AATCTGGTCTGACCATGGCAGCACTACGTCCGAGAGTAGGGGAAGTTCGG
AGTCTGGGGATGAGATCTCGACGTGCGGGCAGCGGGAGGCGGCCGACGCG
GCTTTACTGCTGGCATCAAGGGGAGCGAGAAAGAATGACGATGGTTCGCT
GTCGTCCCCCGCATTTTGGACGTCGCGTCAGGTTTTGGAGCGTTACGTTT
TACCACGTCAAGTCTGCTGATTCCTCTGCTTCGCCAGGTAGCGCAGCCAG
TCCACTTCTGAAGCGACAGACAACAACCAAAACGAATATCTGTGGAGAAA
CATTGTTGAGAATTTTGAGAGCGGTTGTCTATTGATGGACAAAAAAAAAG
GATTTTTTCGAAATACCCGGAGCTTTTACTTCTCTCGTGCATATACTATT
TTGCTAACTTTAGGCGTTCTTGGAGGCTGGTGAAGGCAATACATTTTATT
ATACAGTATATTTCACGGAGTTATGGCCAGGGCCCTAGTTTTGTAGTTTG
GCCTTGTAGACTACCGATATAGAGTGTCCATAGTGTTGCGCAGGATTTGC
AGCAGCAATTCGAGTTGATCGACGAGAATTAACGTGGTGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig3975:9048..12588+

>mRNA_H-paniculata_contig3975.10308.1 ID=mRNA_H-paniculata_contig3975.10308.1|Name=mRNA_H-paniculata_contig3975.10308.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3300bp|location=Sequence derived from alignment at H-paniculata_contig3975:9048..12588+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTACCCATCCTTTCTTCAGTTGAATGTCATGCTGTCGTTGTTATTAC
CATCTACCTCTTCCCAACGCACCTATTGATTGCACTGTCTTATCTTCGAC
GGCGGCATATTTTTCAGGGTGGATATTTAGTCTCGTTGCGTACACACCAC
CGGGGACAGCAGATAACCCAACAGGCAGTGGTGGCGACAGCGGGGAAAAT
GGACGTAATCGACGTAGCAGGGAAGCTTCTTGGGCTAGGCGTGGCTGATC
TAGGGGCAGGGGAGTCTGGGTCAGAGGATGAGGACGCATGCTGGTCCCGC
GCGGACAGTGCCGCTTCGTACGAAGGGGTTGGTAGTGATGATGAACACAG
CGCCAACGGCAAGCGGAAGAGAATGTCTGCAGAAGACCGTAAAGCCCGCA
ACCGGGAGAGGAACCGCCTGCACGCTCGCAAAACGCGGCAGCGGAAAAAG
CAGCATGTTCAAGAGCTGCAGCTAAAGATCTGGGGCCTCCGCCAGGAGCG
TCAGCGATTACTTCAGCTCTCCACGGAGCATCATACCGCGGGCGTTCTGC
TCGCCCTCAGCTGCTCGCCAAACCGCTGTATCCAAGGAAGGGTAGGAGGA
GCCAGCGACTCCTCCACACGGACCCCGCAGGCCGTCGCCCCGGTCCCTGG
GAGAGATTGGAACCGCGAGCTAGCTTTACATGAAGAGACCCTACACAAGA
TAACAAAGGAGTTTGAGAGCATGGATGGCGGGCAGCACGCTGGTGAGGAA
GGGTGTGGCGGCGTGTTGGACGACAGCAGCACTGGTCGGCGGAGTGTTGG
TGGCTCTATTGGTAAGGGCGGGGACTCTTCGCGCGGGGCGGCAAGCAGGG
GCACTCTGGCGGACAGGACGGCGCTGCGGCGCGAGAGAAACCGCATGCAC
GCGAAGCGCACACGTAACCGCAAGAAGCTGTTCGTGGAGGCTTGCAGCGT
CATGATCGACAAGATGATGGTACCCATCCTTTCTTCAGTTGAATGTCATG
CTGTCGTTGTTATTACCATCTACCTCTTCCCAACGCACCTATTGATTGCA
CTGTCTTATCTTCGACGGCGGCATATTTTTCAGGGTGGATATTTAGTCTC
GTTGCGTACACACCACCGGGGACAGCAGATAACCCAACAGGCAGTGGTGG
CGACAGCGGGGAAAATGGACGTAATCGACGTAGCAGGGAAGCTTCTTGGG
CTAGGCGTGGCTGATCTAGGGGCAGGGGAGTCTGGGTCAGAGGATGAGGA
CGCATGCTGGTCCCGCGCGGACAGTGCCGCTTCGTACGAAGGGGTTGGTA
GTGATGATGAACACAGCGCCAACGGCAAGCGGAAGAGAATGTCTGCAGAA
GACCGTAAAGCCCGCAACCGGGAGAGGAACCGCCTGCACGCTCGCAAAAC
GCGGCAGCGGAAAAAGCAGCATGTTCAAGAGCTGCAGCTAAAGATCTGGG
GCCTCCGCCAGGAGCGTCAGCGATTACTTCAGCTCTCCACGGAGCATCAT
ACCGCGGGCGTTCTGCTCGCCCTCAGCTGCTCGCCAAACCGCTGTATCCA
AGGAAGGGTAGGAGGAGCCAGCGACTCCTCCACACGGACCCCGCAGGCCG
TCGCCCCGGTCCCTGGGAGAGATTGGAACCGCGAGCTAGCTTTACATGAA
GAGACCCTACACAAGATAACAAAGGAGTTTGAGAGCATGGATGGCGGGCA
GCACGCTGGTGAGGAAGGGTGTGGCGGCGTGTTGGACGACAGCAGCACTG
GTCGGCGGAGTGTTGGTGGCTCTATTGGTAAGGGCGGGGACTCTTCGCGC
GGGGCGGCAAGCAGGGGCACTCTGGCGGACAGGACGGCGCTGCGGCGCGA
GAGAAACCGCATGCACGCGAAGCGCACACGTAACCGCAAGAAGCTGTTCG
TGGAGGCTTGCAGCGTCATGATCGACAAGATGAAAGTCGAAAATGCTCAG
CTGAAGGCCGAAATCCGCGCGTCAGGAATCCACCTCCCAGAAGCCCCCAA
CAATCCCGCGGCCGGTCAAGATATGGTCCCTGAAGAGCCCCTGCCAGAGT
ACCTCGCTGCTCTGTTGGAGTTTGCCGAGGGAAAAGCTCAATCACCTTGC
GCGGCATCCTCCGCAGCGTCGGCTGCGCTCACGGTACCCAGAGCACCGAA
GTCACCTTCGGTCTTTTCCCGGCAGTCTTCAGCATCATCGTTGACCGTTT
CTTCCTCCCGTTGCGTCGACACCAACGCGCCGGTGCCGCCAGCACTCGAG
CCCAAATCGAATGCACCTGGCCAGGCTCTCGAGGATGCTGGGAAGCTTTG
CGCATTCATGGAGGCCGCTCAATCGCGATCCGCGAAGCGGATTCGCGTTG
TTGGCCAAGATGGCAGCGACAGCAGTATTACTGGTGCGCGAGCGCGAATC
TGGTCTGACCATGGCAGCACTACGTCCGAGAGTAGGGGAAGTTCGGAGTC
TGGGGATGAGATCTCGACGTGCGGGCAGCGGGAGGCGGCCGACGCGGCTT
TACTGCTGGCATCAAGGGGAGCGAGAAAGAATGACGATGGTTCGCTGTCG
TCCCCCGCATTTTGGACGTCGCGTCAGGTTTTGGAGCGTTACGTTTTACC
ACGTCAAGTCTGCTGAAAAGTCGAAAATGCTCAGCTGAAGGCCGAAATCC
GCGCGTCAGGAATCCACCTCCCAGAAGCCCCCAACAATCCCGCGGCCGGT
CAAGATATGGTCCCTGAAGAGCCCCTGCCAGAGTACCTCGCTGCTCTGTT
GGAGTTTGCCGAGGGAAAAGCTCAATCACCTTGCGCGGCATCCTCCGCAG
CGTCGGCTGCGCTCACGGTACCCAGAGCACCGAAGTCACCTTCGGTCTTT
TCCCGGCAGTCTTCAGCATCATCGTTGACCGTTTCTTCCTCCCGTTGCGT
CGACACCAACGCGCCGGTGCCGCCAGCACTCGAGCCCAAATCGAATGCAC
CTGGCCAGGCTCTCGAGGATGCTGGGAAGCTTTGCGCATTCATGGAGGCC
GCTCAATCGCGATCCGCGAAGCGGATTCGCGTTGTTGGCCAAGATGGCAG
CGACAGCAGTATTACTGGTGCGCGAGCGCGAATCTGGTCTGACCATGGCA
GCACTACGTCCGAGAGTAGGGGAAGTTCGGAGTCTGGGGATGAGATCTCG
ACGTGCGGGCAGCGGGAGGCGGCCGACGCGGCTTTACTGCTGGCATCAAG
GGGAGCGAGAAAGAATGACGATGGTTCGCTGTCGTCCCCCGCATTTTGGA
CGTCGCGTCAGGTTTTGGAGCGTTACGTTTTACCACGTCAAGTCTGCTGA
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