mRNA_H-paniculata_contig3974.10306.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3974.10306.1 vs. uniprot
Match: A0A6H5L2Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Z5_9PHAE) HSP 1 Score: 457 bits (1175), Expect = 4.070e-130 Identity = 238/424 (56.13%), Postives = 291/424 (68.63%), Query Frame = 1
Query: 4 KGVKGNKFPYRKRLREGLETAYQN----RGMLFCMQEAILYARGKDPICPDHRPLWWPEAGGNGPQIRAPLVGANFEGRRVGAASLQPWQVRRNIFGDGSTT--GADGRVEDSPVRADGMRLPPMMVLPLSALRSRLPEFKEGKTVPLSSIPKTSAVVWVSHCWMGTPSRPDDQDNSKAKVLYKGLKDLDASDVYVWIDVACLPDSV-----GAMSKAEESSKGQAQGQWVXXXXXXXXXXXXXXXXXXXXXAGRRARTIRALPLYMLCCDFFLAMDEQEPVYWCSPWTRLERAALREAIALTSGGGATKASRAGHPRMLKMRRDEVTTFMGLSRRSKATITRANSNVRGGAGSSRQIAEVLLPPFAQGVKVGASGIGAMDVPAMKICYQLLEGLSLVREKLDRYPCMDIPRLTPGAEAQDRPI 1242
KG K KFPY+KRLREGL+ AYQ+ RGMLFC+QEA+LY RGKDPICP + P WWP + PQIRAPLVG+ FEGRRVGAASL PWQ+R N+FG+G+ G G S VRADG R+PPMMVLPLSA++ RLP+F EG TVP+S IP+ + VVWVSH W GTP+RPDDQ N+KAK +Y+GL +LD DVYVW+DV+CLP SV G + + +G+ V G+RARTIRALPL++LCCD+FL++D++EP+Y SPWTRLERAALRE + LTSGGGATK +RAGHPRML+M RDE +FM L +RS ++ N+ S LPPF G K ASGI A DVPAM+ +QLL+GLSL+R KL RYP +DIPRL E +D PI
Sbjct: 1408 KGGKMTKFPYQKRLREGLDAAYQSECGDRGMLFCLQEALLYVRGKDPICPGYSPRWWPSSPATSPQIRAPLVGSWFEGRRVGAASLLPWQMRHNLFGEGALADDGGTGAGSPSRVRADGTRVPPMMVLPLSAVQKRLPDFDEGLTVPVSEIPRNAVVVWVSHYWGGTPARPDDQGNTKAKAIYEGLTNLDRGDVYVWVDVSCLPQSVQQPAGGRGGGGDAAVPTTPRGKAVAEAVAFSSSGRSQTEVEALEEVGQRARTIRALPLFLLCCDYFLSVDDREPIYTRSPWTRLERAALREVLTLTSGGGATKTTRAGHPRMLRMLRDETASFMDLPKRSTTVVSHLNN-------LSMLPKLEALPPFGPGSKSAASGIWASDVPAMQRSFQLLDGLSLMRAKLARYPAVDIPRLHLAEEGEDTPI 1824
BLAST of mRNA_H-paniculata_contig3974.10306.1 vs. uniprot
Match: D7FQV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV9_ECTSI) HSP 1 Score: 435 bits (1119), Expect = 3.060e-123 Identity = 225/400 (56.25%), Postives = 277/400 (69.25%), Query Frame = 1
Query: 1 SKGVKGNKFPYRKRLREGLETAYQNRGMLFCMQEAILYARGKDPICPDHRPLWWPEAGGNGPQIRAPLVGANFEGRRVGAASLQPWQVRRNIFGDGSTTGADGRVEDSP--VRADGMRLPPMMVLPLSALRSRLPEFKEGKTVPLSSIPKTSAVVWVSHCWMGTPSRPDDQDNSKAKVLYKGLKDLDASDVYVWIDVACLPDSV-------GAMSKAEESSKGQAQGQWVXXXXXXXXXXXXXXXXXXXXXAGRRARTIRALPLYMLCCDFFLAMDEQEPVYWCSPWTRLERAALREAIALTSGGGATKASRAGHPRMLKMRRDEVTTFMGLSRRSKATITRANSNVRGGAGSSRQIAEVLLPPFAQGVKVGASGIGAMDVPAMKICYQLLEGLSLVREK 1173
+KG K KFPY+KRLREGL+ AYQNRGMLFC+QEA+LY RGKDPICP + P WWP + PQIRAPLVG+ FEGRRVGAASL PWQ+R N+FG+G+ G SP VRADG R+PPMMVLPLSA++ RLP+F EG TVP+S IP+ + VVWVSH W GTP+RPDDQ N+KAK +Y+GL +LD DVYVW+DV+CLP S G + + +G+A + V G+RARTIRALPL++LCCD+FL++D++EP+Y SPWTRLERAALRE + LTSGGGATK +RAGHPRML+M RDE +FM L +RS ++ N+ S LPPF G K ASGI A DVPAM+ +QLL+GLSL + K
Sbjct: 1260 AKGGKMTKFPYQKRLREGLDAAYQNRGMLFCLQEALLYVRGKDPICPGYSPRWWPSSPATSPQIRAPLVGSWFEGRRVGAASLLPWQMRHNLFGEGALANGGGAGAGSPSRVRADGTRVPPMMVLPLSAVQKRLPDFDEGLTVPVSEIPRNAVVVWVSHYWGGTPARPDDQGNTKAKAIYEGLVNLDRGDVYVWVDVSCLPQSAQQPAGGGGGDAAVPTTPRGKAVAEAVAFSSSGRSQTEVEALEE----VGQRARTIRALPLFLLCCDYFLSVDDREPIYTRSPWTRLERAALREVLTLTSGGGATKTTRAGHPRMLRMLRDETASFMDLPKRSTTVVSHMNN-------LSMLPKLEALPPFGPGSKSAASGIWASDVPAMQRSFQLLDGLSLGQGK 1648 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3974.10306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3974.10306.1 >prot_H-paniculata_contig3974.10306.1 ID=prot_H-paniculata_contig3974.10306.1|Name=mRNA_H-paniculata_contig3974.10306.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1359bp MLFCMQEAILYARGKDPICPDHRPLWWPEAGGNGPQIRAPLVGANFEGRRback to top mRNA from alignment at H-paniculata_contig3974:161..15980- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3974.10306.1 ID=mRNA_H-paniculata_contig3974.10306.1|Name=mRNA_H-paniculata_contig3974.10306.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15820bp|location=Sequence derived from alignment at H-paniculata_contig3974:161..15980- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3974:161..15980- >mRNA_H-paniculata_contig3974.10306.1 ID=mRNA_H-paniculata_contig3974.10306.1|Name=mRNA_H-paniculata_contig3974.10306.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=8154bp|location=Sequence derived from alignment at H-paniculata_contig3974:161..15980- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |