mRNA_H-paniculata_contig39566.10276.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39566.10276.1
Unique NamemRNA_H-paniculata_contig39566.10276.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig39566.10276.1 vs. uniprot
Match: D8LJQ4_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ4_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 2.050e-64
Identity = 88/132 (66.67%), Postives = 111/132 (84.09%), Query Frame = 1
Query:    1 PKVDCFEDNPGILMYGMMCVVYTTGMWLLLASWLELPVSTTHSTVGGIVGMAMAYRGADCVNWYEKSDTFPYLTGISAIVASWVLSPVFSGILSVFLFGTVRTLVLRSEEAYRRSFWVYPVLVMATIAVNGE 396
            PKV+CF DNPG+LMYGMMCVVYTTGMWLLLAS+L LPVSTTH+T+G ++GM + Y GA CV W+++SD+FPY+ G++AI  SWVLSP+FSGI+S+ +F TVR  VLRS  A+ RSFWV+P+LVM  I V+GE
Sbjct:   27 PKVECFLDNPGVLMYGMMCVVYTTGMWLLLASYLALPVSTTHATIGAMIGMTVVYGGAGCVVWFQESDSFPYVKGVAAIAVSWVLSPIFSGIVSLLVFLTVRAFVLRSPNAFGRSFWVFPILVMVAITVDGE 158          
BLAST of mRNA_H-paniculata_contig39566.10276.1 vs. uniprot
Match: D8LJQ6_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ6_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 1.310e-61
Identity = 93/129 (72.09%), Postives = 109/129 (84.50%), Query Frame = 1
Query:    4 KVDCFEDNPGILMYGMMCVVYTTGMWLLLASWLELPVSTTHSTVGGIVGMAMAYRGADCVNWYEKSDTFPYLTGISAIVASWVLSPVFSGILSVFLFGTVRTLVLRSEEAYRRSFWVYPVLVMATIAVN 390
             V+CF DNPGILMYGMMCVVYTTGMWLLLAS+LELPVSTTHST+G I+GMA+AY G+ CV WY++SD FPY  G++AI  SWVLSP+FSG+ S+ +F TVR  VLRS  A+ RSFWV+PVLVM TIAVN
Sbjct:   49 NVECFLDNPGILMYGMMCVVYTTGMWLLLASYLELPVSTTHSTIGAIIGMAVAYAGSGCVVWYQESDIFPYFKGVAAIAVSWVLSPIFSGVASLLVFLTVRAFVLRSPNAFGRSFWVFPVLVMVTIAVN 177          
BLAST of mRNA_H-paniculata_contig39566.10276.1 vs. uniprot
Match: A0A6H5JNL8_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNL8_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 2.150e-61
Identity = 95/131 (72.52%), Postives = 112/131 (85.50%), Query Frame = 1
Query:    4 KVDCFEDNPGILMYGMMCVVYTTGMWLLLASWLELPVSTTHSTVGGIVGMAMAYRGADCVNWYEKSDTFPYLTGISAIVASWVLSPVFSGILSVFLFGTVRTLVLRSEEAYRRSFWVYPVLVMATIAVNGE 396
            K++CF DNPGILMYG MCVVYTTG+WLLLAS+ ELPVSTTHST+GGIVGMAM YRGADCV WYE++D FPYL GISAIVASWVLSPV S +++V LF  +RT VLRS ++++R+  V+P LV ATIAVNG 
Sbjct:    4 KIECFTDNPGILMYGNMCVVYTTGIWLLLASYFELPVSTTHSTIGGIVGMAMTYRGADCVVWYEEADLFPYLKGISAIVASWVLSPVLSAVIAVALFLFMRTFVLRSPDSHQRAIVVFPFLVTATIAVNGN 134          
BLAST of mRNA_H-paniculata_contig39566.10276.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 8.770e-60
Identity = 94/128 (73.44%), Postives = 111/128 (86.72%), Query Frame = 1
Query:    7 VDCFEDNPGILMYGMMCVVYTTGMWLLLASWLELPVSTTHSTVGGIVGMAMAYRGADCVNWYEKSDTFPYLTGISAIVASWVLSPVFSGILSVFLFGTVRTLVLRSEEAYRRSFWVYPVLVMATIAVN 390
            ++CFEDNPGILMYG MCVVYTTG+WLLLAS+ ELPVSTTHSTVGGIVGMAM YRGADCV WYE++D FPYL G+SAIVASW LSP+FS +++V LF  +RT VLRS +A++R+  V+P LV ATIAVN
Sbjct:   89 IECFEDNPGILMYGNMCVVYTTGIWLLLASFFELPVSTTHSTVGGIVGMAMTYRGADCVVWYEEADLFPYLKGVSAIVASWALSPLFSAVIAVALFLFMRTFVLRSPDAHKRAINVFPFLVTATIAVN 216          
BLAST of mRNA_H-paniculata_contig39566.10276.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 2.710e-58
Identity = 93/127 (73.23%), Postives = 108/127 (85.04%), Query Frame = 1
Query:   10 DCFEDNPGILMYGMMCVVYTTGMWLLLASWLELPVSTTHSTVGGIVGMAMAYRGADCVNWYEKSDTFPYLTGISAIVASWVLSPVFSGILSVFLFGTVRTLVLRSEEAYRRSFWVYPVLVMATIAVN 390
            +CFEDNPGILMYG MCVVYTTG WLLLAS+ ELPVSTTHST+GGIVGMA+ YRG DCV WYEK+D FPYL GISAIVASWVLSPV S +++V LF  +RT VLRS ++++R+  V+P LV ATIAVN
Sbjct:   91 ECFEDNPGILMYGNMCVVYTTGFWLLLASFFELPVSTTHSTIGGIVGMAITYRGPDCVVWYEKADLFPYLKGISAIVASWVLSPVLSAVIAVALFLFMRTFVLRSPDSHKRAIVVFPFLVTATIAVN 217          
BLAST of mRNA_H-paniculata_contig39566.10276.1 vs. uniprot
Match: D7FZJ7_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 1.920e-54
Identity = 86/128 (67.19%), Postives = 101/128 (78.91%), Query Frame = 1
Query:    7 VDCFEDNPGILMYGMMCVVYTTGMWLLLASWLELPVSTTHSTVGGIVGMAMAYRGADCVNWYEKSDTFPYLTGISAIVASWVLSPVFSGILSVFLFGTVRTLVLRSEEAYRRSFWVYPVLVMATIAVN 390
            ++CF DNPGILMYG MCVVYT G+WLLLAS+ ELPVSTTHST+GGIVGM M YRGADCV WYE++D FPY+ G+ AIV SW L PV SG+++  LF  VR LVLRSE A  RS  V+P+LV  TIA+ 
Sbjct:   90 IECFTDNPGILMYGNMCVVYTNGIWLLLASFFELPVSTTHSTIGGIVGMTMTYRGADCVVWYEEADHFPYIKGVFAIVVSWALFPVLSGVVATLLFFVVRALVLRSEHALNRSMIVFPLLVTVTIAIE 217          
BLAST of mRNA_H-paniculata_contig39566.10276.1 vs. uniprot
Match: D7FWT9_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 6.530e-54
Identity = 85/129 (65.89%), Postives = 107/129 (82.95%), Query Frame = 1
Query:    4 KVDCFEDNPGILMYGMMCVVYTTGMWLLLASWLELPVSTTHSTVGGIVGMAMAYRGADCVNWYEKSDTFPYLTGISAIVASWVLSPVFSGILSVFLFGTVRTLVLRSEEAYRRSFWVYPVLVMATIAVN 390
            +V CF DNPGILMYG MCVVYT+G WLLLAS+ ELPVSTTH+TVGGIVGMAM YRGADCV WYE+++ FPYL G+SAIVASW LSPV S +++V L+  +RT VLR++++ +++  ++P LV  TIAVN
Sbjct:   96 QVGCFVDNPGILMYGNMCVVYTSGFWLLLASFFELPVSTTHATVGGIVGMAMTYRGADCVVWYEEAEFFPYLKGVSAIVASWALSPVLSAVIAVALYFFMRTFVLRADQSQKKAINIFPCLVTVTIAVN 224          
BLAST of mRNA_H-paniculata_contig39566.10276.1 vs. uniprot
Match: D8LJP9_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJP9_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 8.950e-54
Identity = 78/131 (59.54%), Postives = 100/131 (76.34%), Query Frame = 1
Query:    4 KVDCFEDNPGILMYGMMCVVYTTGMWLLLASWLELPVSTTHSTVGGIVGMAMAYRGADCVNWYEKSDTFPYLTGISAIVASWVLSPVFSGILSVFLFGTVRTLVLRSEEAYRRSFWVYPVLVMATIAVNGE 396
            +V CF DNPG+LMYGMMCV+YTT MWLLLAS+LELPVS T ST+  IVGM +AY G  CV W+ +S+ FP   G+ AI+  W+LSP+ +G+ S  +F  +RT VLRS  A+RRSFWV+PVLVM  +A++GE
Sbjct:    6 QVSCFLDNPGVLMYGMMCVLYTTAMWLLLASYLELPVSATQSTISSIVGMTLAYGGRACVVWHRESEHFPGFQGVGAILLYWLLSPIVAGVASCLVFLALRTFVLRSPHAFRRSFWVFPVLVMIIVALDGE 136          
BLAST of mRNA_H-paniculata_contig39566.10276.1 vs. uniprot
Match: A0A7R9T173_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9T173_9CHLO)

HSP 1 Score: 161 bits (407), Expect = 1.080e-47
Identity = 69/127 (54.33%), Postives = 97/127 (76.38%), Query Frame = 1
Query:   10 DCFEDNPGILMYGMMCVVYTTGMWLLLASWLELPVSTTHSTVGGIVGMAMAYRGADCVNWYEKSDTFPYLTGISAIVASWVLSPVFSGILSVFLFGTVRTLVLRSEEAYRRSFWVYPVLVMATIAVN 390
            DCF D+PG+LMYG +CV+++  +WL++AS+LE+PVSTTHS VGG++GM M  RG+ CV W  KSDTFPY+ G++AIV SW+LSP+ SG  S   F T+R LV+RS+ +Y R+   +PVL+  T+ +N
Sbjct:   16 DCFNDDPGLLMYGCLCVIFSVAIWLVVASFLEMPVSTTHSCVGGMIGMTMVARGSSCVVWSAKSDTFPYIKGVAAIVVSWLLSPIVSGGFSFVFFLTLRALVMRSQNSYARARLAFPVLLACTLIIN 142          
BLAST of mRNA_H-paniculata_contig39566.10276.1 vs. uniprot
Match: A0A6C0FAM7_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0FAM7_9ZZZZ)

HSP 1 Score: 164 bits (416), Expect = 7.190e-46
Identity = 71/126 (56.35%), Postives = 100/126 (79.37%), Query Frame = 1
Query:   13 CFEDNPGILMYGMMCVVYTTGMWLLLASWLELPVSTTHSTVGGIVGMAMAYRGADCVNWYEKSDTFPYLTGISAIVASWVLSPVFSGILSVFLFGTVRTLVLRSEEAYRRSFWVYPVLVMATIAVN 390
            CFED+PG LMYG M V ++  MWL +AS  E+PVSTTHS VGGI+GM +A +G+DCV WY++ DTFP++ G++ IVASWV+SP+FS ILS  LFG +RT  LRS++++ R+ +V+P++V AT+ +N
Sbjct:   75 CFEDDPGSLMYGSMWVCFSVAMWLFIASKYEMPVSTTHSCVGGIIGMTIALKGSDCVIWYQEKDTFPFIGGVAGIVASWVVSPIFSAILSSSLFGILRTCFLRSQDSFSRTSYVFPIMVGATVTLN 200          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39566.10276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJQ4_ECTSI2.050e-6466.67High affinity phosphate transporter n=1 Tax=Ectoca... [more]
D8LJQ6_ECTSI1.310e-6172.09Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JNL8_9PHAE2.150e-6172.52Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A6H5JNE7_9PHAE8.770e-6073.44Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G0K9_ECTSI2.710e-5873.23Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
D7FZJ7_ECTSI1.920e-5467.19Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D7FWT9_ECTSI6.530e-5465.89Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D8LJP9_ECTSI8.950e-5459.54High affinity phosphate transporter n=1 Tax=Ectoca... [more]
A0A7R9T173_9CHLO1.080e-4754.33Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
A0A6C0FAM7_9ZZZZ7.190e-4656.35Uncharacterized protein n=1 Tax=viral metagenome T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39566contigH-paniculata_contig39566:292..687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score202.6
Seed ortholog evalue1.1e-49
Seed eggNOG ortholog2880.D8LJQ6
Preferred namePHO89
KEGG koko:K01280,ko:K03306,ko:K14640
KEGG TC2.A.20,2.A.20.2
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005436,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006817,GO:0006820,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015077,GO:0015081,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015319,GO:0015370,GO:0015672,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0035725,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662
EggNOG free text desc.inorganic phosphate transmembrane transporter activity
EggNOG OGsCOG0306@1,KOG2493@2759
EC3.4.14.10
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000,ko03110
Exons1
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930211.9149332-CDS-H-paniculata_contig39566:291..6871622930211.9149332-CDS-H-paniculata_contig39566:291..687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39566 292..687 -
1691481192.9708278-CDS-H-paniculata_contig39566:291..6871691481192.9708278-CDS-H-paniculata_contig39566:291..687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39566 292..687 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39566.10276.1prot_H-paniculata_contig39566.10276.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39566 292..687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39566.10276.1

>prot_H-paniculata_contig39566.10276.1 ID=prot_H-paniculata_contig39566.10276.1|Name=mRNA_H-paniculata_contig39566.10276.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
PKVDCFEDNPGILMYGMMCVVYTTGMWLLLASWLELPVSTTHSTVGGIVG
MAMAYRGADCVNWYEKSDTFPYLTGISAIVASWVLSPVFSGILSVFLFGT
VRTLVLRSEEAYRRSFWVYPVLVMATIAVNGE
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mRNA from alignment at H-paniculata_contig39566:292..687-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39566.10276.1 ID=mRNA_H-paniculata_contig39566.10276.1|Name=mRNA_H-paniculata_contig39566.10276.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=396bp|location=Sequence derived from alignment at H-paniculata_contig39566:292..687- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAAGGTTGACTGCTTCGAGGACAACCCTGGTATTCTCATGTACGGCAT GATGTGCGTTGTCTACACCACCGGCATGTGGCTGCTTCTTGCCTCCTGGC TAGAGCTACCGGTATCAACCACCCATTCCACGGTAGGAGGCATCGTCGGC ATGGCTATGGCCTACCGCGGCGCGGACTGTGTGAATTGGTACGAGAAAAG CGACACGTTCCCGTACCTTACAGGGATCTCGGCGATCGTTGCGTCTTGGG TGCTGAGCCCCGTGTTTTCAGGCATCCTGTCCGTGTTTCTGTTCGGTACG GTCCGCACGCTTGTTCTGCGGTCCGAAGAAGCCTACAGGCGATCCTTTTG GGTGTACCCTGTGTTGGTGATGGCCACCATCGCTGTCAACGGTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig39566:292..687-

>mRNA_H-paniculata_contig39566.10276.1 ID=mRNA_H-paniculata_contig39566.10276.1|Name=mRNA_H-paniculata_contig39566.10276.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig39566:292..687- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAAGGTTGACTGCTTCGAGGACAACCCTGGTATTCTCATGTACGGCAT
GATGTGCGTTGTCTACACCACCGGCATGTGGCTGCTTCTTGCCTCCTGGC
TAGAGCTACCGGTATCAACCACCCATTCCACGGTAGGAGGCATCGTCGGC
ATGGCTATGGCCTACCGCGGCGCGGACTGTGTGAATTGGTACGAGAAAAG
CGACACGTTCCCGTACCTTACAGGGATCTCGGCGATCGTTGCGTCTTGGG
TGCTGAGCCCCGTGTTTTCAGGCATCCTGTCCGTGTTTCTGTTCGGTACG
GTCCGCACGCTTGTTCTGCGGTCCGAAGAAGCCTACAGGCGATCCTTTTG
GGTGTACCCTGTGTTGGTGATGGCCACCATCGCTGTCAACGGTGAGCCCA
AGGTTGACTGCTTCGAGGACAACCCTGGTATTCTCATGTACGGCATGATG
TGCGTTGTCTACACCACCGGCATGTGGCTGCTTCTTGCCTCCTGGCTAGA
GCTACCGGTATCAACCACCCATTCCACGGTAGGAGGCATCGTCGGCATGG
CTATGGCCTACCGCGGCGCGGACTGTGTGAATTGGTACGAGAAAAGCGAC
ACGTTCCCGTACCTTACAGGGATCTCGGCGATCGTTGCGTCTTGGGTGCT
GAGCCCCGTGTTTTCAGGCATCCTGTCCGTGTTTCTGTTCGGTACGGTCC
GCACGCTTGTTCTGCGGTCCGAAGAAGCCTACAGGCGATCCTTTTGGGTG
TACCCTGTGTTGGTGATGGCCACCATCGCTGTCAACGGTGAG
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