mRNA_H-paniculata_contig39548.10271.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39548.10271.1
Unique NamemRNA_H-paniculata_contig39548.10271.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig39548.10271.1 vs. uniprot
Match: UPI00201EEB4D (integrin-linked protein kinase-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201EEB4D)

HSP 1 Score: 59.7 bits (143), Expect = 1.090e-9
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 ARDQFHATALILCSERGFVEMVDVLLAAGADTYAVDENGNSALHLACFYGNREVVRCLLTMD-CDVVVSFCRGR 219
            +R  +  T L+  + RG  ++ DVL+ A AD   VDE+GN+ LHLAC YG  E+V+ LL+ D  D+     RG+
Sbjct:   37 SRGAYRQTPLMEAASRGHHDVFDVLIEAKADVPLVDEHGNNILHLACLYGQEEMVKYLLSKDYADIDTKNSRGK 110          
BLAST of mRNA_H-paniculata_contig39548.10271.1 vs. uniprot
Match: A0A1Y2WJN1_9PEZI (Uncharacterized protein n=1 Tax=Daldinia sp. EC12 TaxID=1001832 RepID=A0A1Y2WJN1_9PEZI)

HSP 1 Score: 53.1 bits (126), Expect = 2.710e-6
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 1
Query:   10 QFHATALILCSERGFVEMVDVLLAAGADTYAVDENGNSALHLACFY 147
            ++  T LI  SER F E+VDVLLAAGAD  AVD+ GN+AL   C Y
Sbjct:  384 EYLTTPLIAASERNFDEIVDVLLAAGADINAVDDRGNAALVTVCAY 429          
BLAST of mRNA_H-paniculata_contig39548.10271.1 vs. uniprot
Match: UPI001EAFA591 (26S proteasome non-ATPase regulatory subunit 10-like isoform X1 n=3 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAFA591)

HSP 1 Score: 52.4 bits (124), Expect = 4.840e-6
Identity = 24/61 (39.34%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    4 RDQFHATALILCSERGFVEMVDVLLAAGADTYAVDENGNSALHLACFYGNREVVRCLLTMD 186
            R  F  T+++  +E+G+ E+V++L+  GAD   VD++G++ LHLAC   N E+V+ +L+ D
Sbjct:  229 RGWFERTSVMRAAEKGYKEVVELLVHKGADVTLVDKHGDNILHLACQKNNVEMVKYVLSQD 289          
BLAST of mRNA_H-paniculata_contig39548.10271.1 vs. uniprot
Match: UPI001EE61831 (putative ankyrin repeat protein RF_0381 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE61831)

HSP 1 Score: 52.4 bits (124), Expect = 4.970e-6
Identity = 31/77 (40.26%), Postives = 44/77 (57.14%), Query Frame = 1
Query:    4 RDQFHATALILCSERGFVEMVDVLLAAGADTYAVDENGNSALHLACFYGNREVVRCLL---TMDCDVVVSFCRGRCG 225
            R +   T L+L ++ G   + DVL   GADT   D+ GN+ALHLAC  GN E++  +L   T+D +     CRG+ G
Sbjct:  448 RGKLGRTPLMLAAQCGHKGVFDVLWNRGADTLLFDDEGNTALHLACSEGNVEMIHYMLLQTTLDVN-----CRGKYG 519          
BLAST of mRNA_H-paniculata_contig39548.10271.1 vs. uniprot
Match: UPI001EAFA0DE (ankyrin repeat domain-containing protein 17-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAFA0DE)

HSP 1 Score: 51.6 bits (122), Expect = 9.390e-6
Identity = 20/60 (33.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 ARDQFHATALILCSERGFVEMVDVLLAAGADTYAVDENGNSALHLACFYGNREVVRCLLT 180
            +R +   T +++ +  G +++  +L++ G+D   VD+NG + LH+AC++G  E+VRC+L+
Sbjct:  649 SRGKIGRTPVMVAAAEGHIDLCYLLISKGSDLSVVDDNGCTILHVACYHGQVEIVRCILS 708          
BLAST of mRNA_H-paniculata_contig39548.10271.1 vs. uniprot
Match: UPI001EE5E428 (uncharacterized protein LOC124272766 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5E428)

HSP 1 Score: 51.6 bits (122), Expect = 9.660e-6
Identity = 23/62 (37.10%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 ARDQFHATALILCSERGFVEMVDVLLAAGADTYAVDENGNSALHLACFYGNREVVRCLLTMD 186
            +R Q++ T +++ +  G  E+ D L++ G D   VD +GN+ LH+ACF GN ++ + LL+ D
Sbjct: 2594 SRGQYNWTPVMVAASNGHRELFDFLVSKGCDLSVVDGDGNNILHVACFGGNVDICKYLLSND 2655          
BLAST of mRNA_H-paniculata_contig39548.10271.1 vs. uniprot
Match: UPI001F056194 (KN motif and ankyrin repeat domain-containing protein 1-like isoform X4 n=1 Tax=Lucilia cuprina TaxID=7375 RepID=UPI001F056194)

HSP 1 Score: 51.2 bits (121), Expect = 1.260e-5
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   22 TALILCSERGFVEMVDVLLAAGADTYAVDENGNSALHLACFYGNREVVRCLLTM-DCD 192
            TAL+L    G +EMV +LLAAGAD    DE+G++AL  A  +G  ++V+ LLT  DCD
Sbjct:  380 TALMLAVSHGNLEMVQLLLAAGADINIQDEDGSTALMCAAEHGRSDIVKHLLTHPDCD 437          
BLAST of mRNA_H-paniculata_contig39548.10271.1 vs. uniprot
Match: UPI001F060949 (KN motif and ankyrin repeat domain-containing protein 2-like isoform X2 n=2 Tax=Lucilia cuprina TaxID=7375 RepID=UPI001F060949)

HSP 1 Score: 51.2 bits (121), Expect = 1.300e-5
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   22 TALILCSERGFVEMVDVLLAAGADTYAVDENGNSALHLACFYGNREVVRCLLTM-DCD 192
            TAL+L    G +EMV +LLAAGAD    DE+G++AL  A  +G  ++V+ LLT  DCD
Sbjct: 1015 TALMLAVSHGNLEMVQLLLAAGADINIQDEDGSTALMCAAEHGRSDIVKHLLTHPDCD 1072          
BLAST of mRNA_H-paniculata_contig39548.10271.1 vs. uniprot
Match: UPI001F065E7A (KN motif and ankyrin repeat domain-containing protein 2-like isoform X1 n=2 Tax=Lucilia TaxID=7374 RepID=UPI001F065E7A)

HSP 1 Score: 51.2 bits (121), Expect = 1.300e-5
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   22 TALILCSERGFVEMVDVLLAAGADTYAVDENGNSALHLACFYGNREVVRCLLTM-DCD 192
            TAL+L    G +EMV +LLAAGAD    DE+G++AL  A  +G  ++V+ LLT  DCD
Sbjct: 1039 TALMLAVSHGNLEMVQLLLAAGADINIQDEDGSTALMCAAEHGRSDIVKHLLTHPDCD 1096          
BLAST of mRNA_H-paniculata_contig39548.10271.1 vs. uniprot
Match: A0A0L0CQD5_LUCCU (Uncharacterized protein n=1 Tax=Lucilia cuprina TaxID=7375 RepID=A0A0L0CQD5_LUCCU)

HSP 1 Score: 51.2 bits (121), Expect = 1.310e-5
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   22 TALILCSERGFVEMVDVLLAAGADTYAVDENGNSALHLACFYGNREVVRCLLTM-DCD 192
            TAL+L    G +EMV +LLAAGAD    DE+G++AL  A  +G  ++V+ LLT  DCD
Sbjct: 1384 TALMLAVSHGNLEMVQLLLAAGADINIQDEDGSTALMCAAEHGRSDIVKHLLTHPDCD 1441          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39548.10271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00201EEB4D1.090e-941.89integrin-linked protein kinase-like n=1 Tax=Haliot... [more]
A0A1Y2WJN1_9PEZI2.710e-658.70Uncharacterized protein n=1 Tax=Daldinia sp. EC12 ... [more]
UPI001EAFA5914.840e-639.3426S proteasome non-ATPase regulatory subunit 10-li... [more]
UPI001EE618314.970e-640.26putative ankyrin repeat protein RF_0381 n=1 Tax=Ha... [more]
UPI001EAFA0DE9.390e-633.33ankyrin repeat domain-containing protein 17-like n... [more]
UPI001EE5E4289.660e-637.10uncharacterized protein LOC124272766 n=1 Tax=Halio... [more]
UPI001F0561941.260e-550.00KN motif and ankyrin repeat domain-containing prot... [more]
UPI001F0609491.300e-550.00KN motif and ankyrin repeat domain-containing prot... [more]
UPI001F065E7A1.300e-550.00KN motif and ankyrin repeat domain-containing prot... [more]
A0A0L0CQD5_LUCCU1.310e-550.00Uncharacterized protein n=1 Tax=Lucilia cuprina Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39548contigH-paniculata_contig39548:217..450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930211.5257351-CDS-H-paniculata_contig39548:216..4501622930211.5257351-CDS-H-paniculata_contig39548:216..450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39548 217..450 +
1691481192.8208482-CDS-H-paniculata_contig39548:216..4501691481192.8208482-CDS-H-paniculata_contig39548:216..450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39548 217..450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39548.10271.1prot_H-paniculata_contig39548.10271.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39548 217..450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39548.10271.1

>prot_H-paniculata_contig39548.10271.1 ID=prot_H-paniculata_contig39548.10271.1|Name=mRNA_H-paniculata_contig39548.10271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
ARDQFHATALILCSERGFVEMVDVLLAAGADTYAVDENGNSALHLACFYG
NREVVRCLLTMDCDVVVSFCRGRCGLR*
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mRNA from alignment at H-paniculata_contig39548:217..450+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39548.10271.1 ID=mRNA_H-paniculata_contig39548.10271.1|Name=mRNA_H-paniculata_contig39548.10271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=234bp|location=Sequence derived from alignment at H-paniculata_contig39548:217..450+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCCGCGACCAGTTCCACGCCACCGCGTTGATCTTGTGCTCAGAGCGAGG CTTCGTGGAAATGGTGGACGTCCTGCTGGCCGCCGGCGCAGACACTTATG CTGTTGACGAAAACGGTAACAGTGCTCTGCACCTGGCGTGTTTCTACGGG AATCGTGAGGTCGTTCGGTGTTTACTCACGATGGATTGTGATGTTGTGGT GAGTTTTTGTAGGGGGCGGTGTGGTCTTCGTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig39548:217..450+

>mRNA_H-paniculata_contig39548.10271.1 ID=mRNA_H-paniculata_contig39548.10271.1|Name=mRNA_H-paniculata_contig39548.10271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig39548:217..450+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCCGCGACCAGTTCCACGCCACCGCGTTGATCTTGTGCTCAGAGCGAGG
CTTCGTGGAAATGGTGGACGTCCTGCTGGCCGCCGGCGCAGACACTTATG
CTGTTGACGAAAACGGTAACAGTGCTCTGCACCTGGCGTGTTTCTACGGG
AATCGTGAGGTCGTTCGGTGTTTACTCACGATGGATTGTGATGTTGTGGT
GAGTTTTTGTAGGGGGCGGTGTGGTCTTCGTTAAGCCCGCGACCAGTTCC
ACGCCACCGCGTTGATCTTGTGCTCAGAGCGAGGCTTCGTGGAAATGGTG
GACGTCCTGCTGGCCGCCGGCGCAGACACTTATGCTGTTGACGAAAACGG
TAACAGTGCTCTGCACCTGGCGTGTTTCTACGGGAATCGTGAGGTCGTTC
GGTGTTTACTCACGATGGATTGTGATGTTGTGGTGAGTTTTTGTAGGGGG
CGGTGTGGTCTTCGTTAA
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