mRNA_H-paniculata_contig3951.10265.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3951.10265.1
Unique NamemRNA_H-paniculata_contig3951.10265.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3951.10265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3951contigH-paniculata_contig3951:6992..7582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size591
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3951.10265.1prot_H-paniculata_contig3951.10265.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3951 7032..7442 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930210.7677295-UTR-H-paniculata_contig3951:6991..70311622930210.7677295-UTR-H-paniculata_contig3951:6991..7031Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3951 6992..7031 +
1691481192.4931066-UTR-H-paniculata_contig3951:6991..70311691481192.4931066-UTR-H-paniculata_contig3951:6991..7031Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3951 6992..7031 +
1622930210.7868655-UTR-H-paniculata_contig3951:7442..75821622930210.7868655-UTR-H-paniculata_contig3951:7442..7582Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3951 7443..7582 +
1691481192.5083604-UTR-H-paniculata_contig3951:7442..75821691481192.5083604-UTR-H-paniculata_contig3951:7442..7582Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3951 7443..7582 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930210.7779524-CDS-H-paniculata_contig3951:7031..74421622930210.7779524-CDS-H-paniculata_contig3951:7031..7442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3951 7032..7442 +
1691481192.5010026-CDS-H-paniculata_contig3951:7031..74421691481192.5010026-CDS-H-paniculata_contig3951:7031..7442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3951 7032..7442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3951.10265.1

>prot_H-paniculata_contig3951.10265.1 ID=prot_H-paniculata_contig3951.10265.1|Name=mRNA_H-paniculata_contig3951.10265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MDRFNDTTLGATRRGCAVFLEELEEVRMLPNPSMCAVVTLCKLLFTMFCG
RILYFSDRSLRLCLRELMEFDEVSTSCWRSSYSTTAWLTRCPSIVKQGHK
FNKYPLVRRETGAVLSRPPGEFRPAMWPILDRVYIQ*
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mRNA from alignment at H-paniculata_contig3951:6992..7582+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3951.10265.1 ID=mRNA_H-paniculata_contig3951.10265.1|Name=mRNA_H-paniculata_contig3951.10265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=591bp|location=Sequence derived from alignment at H-paniculata_contig3951:6992..7582+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCTGACGAACCAATGACAGACGTCTCTGGACGAGATACATGGATCGGT
TCAACGACACAACTCTCGGTGCCACGAGAAGAGGGTGTGCTGTATTTTTG
GAGGAGCTCGAGGAGGTCAGAATGTTGCCCAATCCGAGCATGTGTGCAGT
TGTTACACTCTGTAAACTACTGTTTACGATGTTTTGTGGACGCATACTAT
ACTTCTCTGACCGCAGCCTGCGGTTATGTCTGAGAGAGCTGATGGAGTTT
GACGAGGTATCAACGTCTTGCTGGCGTTCCAGCTATTCAACGACAGCATG
GTTAACCAGGTGTCCCTCCATCGTGAAACAGGGTCACAAATTTAATAAAT
ACCCACTCGTACGAAGGGAAACAGGTGCTGTCCTGTCGCGCCCACCAGGT
GAATTCAGGCCTGCGATGTGGCCAATACTTGATCGGGTTTACATACAATA
GGTTGCTGTGTTATATTGTGTGTTTCCTGTGAGTTGTGTGGGGAAGTTGA
TGTGTGCGTACACACTACTAGAGTGAGAGTTGCACACATGAAGAGTGCTG
CTGAGAGGAATGGTTACCTCGCAGCTCGGCTGTCTCGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3951:6992..7582+

>mRNA_H-paniculata_contig3951.10265.1 ID=mRNA_H-paniculata_contig3951.10265.1|Name=mRNA_H-paniculata_contig3951.10265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig3951:6992..7582+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATCGGTTCAACGACACAACTCTCGGTGCCACGAGAAGAGGGTGTGC
TGTATTTTTGGAGGAGCTCGAGGAGGTCAGAATGTTGCCCAATCCGAGCA
TGTGTGCAGTTGTTACACTCTGTAAACTACTGTTTACGATGTTTTGTGGA
CGCATACTATACTTCTCTGACCGCAGCCTGCGGTTATGTCTGAGAGAGCT
GATGGAGTTTGACGAGGTATCAACGTCTTGCTGGCGTTCCAGCTATTCAA
CGACAGCATGGTTAACCAGGTGTCCCTCCATCGTGAAACAGGGTCACAAA
TTTAATAAATACCCACTCGTACGAAGGGAAACAGGTGCTGTCCTGTCGCG
CCCACCAGGTGAATTCAGGCCTGCGATGTGGCCAATACTTGATCGGGTTT
ACATACAATAGATGGATCGGTTCAACGACACAACTCTCGGTGCCACGAGA
AGAGGGTGTGCTGTATTTTTGGAGGAGCTCGAGGAGGTCAGAATGTTGCC
CAATCCGAGCATGTGTGCAGTTGTTACACTCTGTAAACTACTGTTTACGA
TGTTTTGTGGACGCATACTATACTTCTCTGACCGCAGCCTGCGGTTATGT
CTGAGAGAGCTGATGGAGTTTGACGAGGTATCAACGTCTTGCTGGCGTTC
CAGCTATTCAACGACAGCATGGTTAACCAGGTGTCCCTCCATCGTGAAAC
AGGGTCACAAATTTAATAAATACCCACTCGTACGAAGGGAAACAGGTGCT
GTCCTGTCGCGCCCACCAGGTGAATTCAGGCCTGCGATGTGGCCAATACT
TGATCGGGTTTACATACAATAG
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