mRNA_H-paniculata_contig3951.10266.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3951.10266.1
Unique NamemRNA_H-paniculata_contig3951.10266.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3951.10266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3951contigH-paniculata_contig3951:12937..15835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930210.7219899-CDS-H-paniculata_contig3951:12936..130231622930210.7219899-CDS-H-paniculata_contig3951:12936..13023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3951 12937..13023 -
1691481192.477044-CDS-H-paniculata_contig3951:12936..130231691481192.477044-CDS-H-paniculata_contig3951:12936..13023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3951 12937..13023 -
1622930210.7328534-CDS-H-paniculata_contig3951:15742..158351622930210.7328534-CDS-H-paniculata_contig3951:15742..15835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3951 15743..15835 -
1691481192.485473-CDS-H-paniculata_contig3951:15742..158351691481192.485473-CDS-H-paniculata_contig3951:15742..15835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3951 15743..15835 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3951.10266.1prot_H-paniculata_contig3951.10266.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3951 12937..15835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3951.10266.1

>prot_H-paniculata_contig3951.10266.1 ID=prot_H-paniculata_contig3951.10266.1|Name=mRNA_H-paniculata_contig3951.10266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
RGAASSRREGPQRMDKVLGFRREFGRAPSPVANYGPIHHLQQQQQQHKNT
RPDDTIGTAK
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mRNA from alignment at H-paniculata_contig3951:12937..15835-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3951.10266.1 ID=mRNA_H-paniculata_contig3951.10266.1|Name=mRNA_H-paniculata_contig3951.10266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2899bp|location=Sequence derived from alignment at H-paniculata_contig3951:12937..15835- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGGCGCTGCTTCGAGTAGAAGGGAAGGACCACAGCGCATGGATAAAGT
CCTCGGATTTCGAAGAGAATTCGGGCGTGCTCCGTCGCCAGTGGTATATT
CTCTAAGCTCTTTTGTAGCCGGTGCAGACTGTCATCATTTGTTTTTCTAT
TTGATCAGTTTTGGCTTGTGTTTTCTTTGCCCTGACCCAAGGTATCGGCC
TACCTCACATGTAGCATAGATCGCGGCCACGCTAGAGACGAACGCTGCTT
TGGGCCATGTGGGAAGGAGGTCAAGAGATGAGTAATGACATCGTGATCTG
TTTCTTGATTTAGTCAAAGTTCTGACTGGTGAAGCAAGGTCCTACGGTAA
ACAGTAGAGGTACACTGAAGTTGACGTCCTGTAGTGTCGGCCTCAAGATG
CGATAGAAATAGTGGATCTTTCAAGGACAAAGGCAGTTCGACTGTCATGT
ATCTATCTTGGATGCTTCACGGTGAAGACACTGTATCTGTGTAGGCGGTT
GTACATGTACAGTCAATACACCTGTAGCATTGGCAGTAAATAGTCTTTCA
TTATAGGCTGGCCGTGACCATATCTTGTATGTTCCTCTATCCGGTATCTA
TTCGTTGGAGACATGTCCTTTGTATCGCTCGGTCCTTGTAAATCGGTACC
CCCGTGGAACGAAAACGCAAGGAAGGGTGGTTGGTTGCGCTTACCCTAAA
CTATTTGAATGCAGGAATGCTGAGGGGGTGGGTGAGGATCCAGCGTGCTC
TTACTCCCTTGTCGTTCGACAGTTGCTGGTATATGTATCACATCCGAGGG
TGCTCGGCAGGAATTGTGGGGCAGGTTCACTGCAGCATGTTGTTCGATTC
CGCACCTTGTATACAGTGCGCTGGCCATTCGTGTTTTTCTGCTCTGCGCT
CCTACGACATACCTGGTACAGTCAGTACTGTGATGTAGAACGTGTAGGAT
GTATGCCGACTACCTTGGTATCAATAGATGTGCAGCTGTCTGCCTGTTTA
TTTCTGCACAAAAGAATATGATGAAATATATGCATTCATGTAGAGCGGCA
GAGGAGTAGCGTGAAATTAGCCTCGGGTGGAGTGTGATTGACACATACTA
AAGCATGCATCTATAGGCGGCATGCGTTGCACCCTTTGTACAATCGCGTG
AAGCTAGAGATTGGGATCGCCAGTATGGAGCAGCCAGAGTTTTGATGTTG
CTTGATGATCTAGTTAGTAAATAAGCTCGGTCGACTGATACATCATGGTC
CACACTCATTCCACGTTGTCCATCTTTTTCAATGACGTGTGGTCGCCAGC
ATCATAGGAGATGTTCGAATGTTATCTTTTTGTTTTTTCAATTCTTTCGA
AGTAGTACTCCTTGTTGAACGAAGGAAGTCGATTCTCTGTTTCTTCCACA
GTTCCCACTGCTGCTATGTAGCATTACCGTTTTACCGCTCTAGGTTCGAG
TCGGTCCGTCGGCTATCTCTAGTAGTTGTTATGGAGCGTTTTTCTTGACG
TCCCGCCAATTTCTTGTCTGTATTCTAAACAGACGTAACTGTACTTTACT
GTAGATGGTCACGGGTAATTCCGCGGAATCGACGCCAAATTGTGTCAACA
AGAGGTGATGTTTTCCCACCGTGACGCCGAAAGATGTTGTAAACACGACG
AGTTCTTGCGCCACAGGCCAGTCAGTGAACACATTGTTGATGAAACTGTA
GGATGAATCGGTTGGTTGATTTCGCCAACTTTTCGGTGGGTATGACTTGG
TCTAGTGTAGGACATGATGGGCTTGCCCCTGTCTTGTATCTTCGCCCGTA
TCTGGTCTGCATTTCAGACCGTTCGTTCCTCCCATGTATGTAGCTGGTAC
TACACTCTGTCACACCAAATGGTGCTTGGTTGCGCTCGCCCTCAACCGTT
TGAGATGTACTGACAATTATTAATGGGTGGTCTTGTCGCCGCTTCTCTAT
GTTGCGTGGCCGTCGATCGTGCCGTTATTCGGTGCGCGGCGTTTCGGAAT
GTGTGGCACTTGTTCGTGATAAATTGATGCCAAATTCTGCCTTTTTTCCC
GTGGCGGTCAAGACCGCTGCTAATCCCTGTTGCTGGTGTGTGTATTTTTT
TAATACCATATCCTTCGAGGGTGAGGATGTGCCGGCGTGGGGGTTGTGCA
CAAAACACGCATGTTTTTTCTGTTCCTGATAGTTGCATAGTTTTCAATGT
ATATATAGAAATATTGTCGGGACAGGTCACGTATCCGTACCGTATCGTGA
TAGATATCGAGTGAGTAACCCGTCACGTGTTCGTTCGTCACGTGTGTATG
CCGCCGTCCTGCTGGGAGGGGATACTTGAATTATTTACTATTTGTCTCTC
GAACAGGACGGTGGGATGAACGAGTGTAATGACTGGCAAGCAGCGCTAGA
TTTCTACTCGGATGGAGTGTGCATCGCATCCAGCAGAGCTTCAGCTTACC
CAGCACCTTCGGGGAACTAACCATCCATAAGTTACTGTCGATGTTAAGTC
CTCTCTACGGTGAACAGAAACAACATACACGATGAGAATTAATGTGCATC
TGCGAAGCCGGATCCAGGCTGCTGAAAATAAGTCACGAATCATGCACGGT
TGACAGTCGTACTTATTCGAGTGTGTAAACTCGGCCGTTCATGCGCAGTA
AGCCTCATCTTTGTCACCATCTCGAAACTGTTTATATTCATCGCCGTGTA
CAGTGTAGCTAACTTCTCGGCTGTAAACCTAAGCTTTGCGTGTACTGCTA
GCACTCATGCGCCAGACTAAAGGATGCCATACCTACCACCTCGTGTTTCT
CTTCCGCTAAAGGCTAACTACGGACCAATACATCATCTCCAGCAGCAACA
GCAGCAGCACAAAAATACACGTCCAGATGATACAATTGGGACCGCCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3951:12937..15835-

>mRNA_H-paniculata_contig3951.10266.1 ID=mRNA_H-paniculata_contig3951.10266.1|Name=mRNA_H-paniculata_contig3951.10266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig3951:12937..15835- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGGCGCTGCTTCGAGTAGAAGGGAAGGACCACAGCGCATGGATAAAGT
CCTCGGATTTCGAAGAGAATTCGGGCGTGCTCCGTCGCCAGTGCGAGGCG
CTGCTTCGAGTAGAAGGGAAGGACCACAGCGCATGGATAAAGTCCTCGGA
TTTCGAAGAGAATTCGGGCGTGCTCCGTCGCCAGTGGCTAACTACGGACC
AATACATCATCTCCAGCAGCAACAGCAGCAGCACAAAAATACACGTCCAG
ATGATACAATTGGGACCGCCAAGGCTAACTACGGACCAATACATCATCTC
CAGCAGCAACAGCAGCAGCACAAAAATACACGTCCAGATGATACAATTGG
GACCGCCAAG
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