mRNA_H-paniculata_contig39508.10264.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39508.10264.1
Unique NamemRNA_H-paniculata_contig39508.10264.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig39508.10264.1 vs. uniprot
Match: A0A1Y1L8J7_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1L8J7_PHOPY)

HSP 1 Score: 139 bits (351), Expect = 3.650e-39
Identity = 74/151 (49.01%), Postives = 99/151 (65.56%), Query Frame = 1
Query:    1 LEGFVDADWAEDVEDRKSTTGYVLKLNGGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETIYLRELLRSIGFECRGSTTLFEDNESAINLSKGSGAHCKTMHIGVRWHGITEWIREGVLALKYAQTGDQLADILRKGRNKAKFQRLKSLLM 453
            L  + D+D+A DVE RKSTTGYV+   GG ISWCSRKQ +V+ SSTEAEY+AA +  KE ++L+ L+  +    + S TL  DN+SAI L K    + ++ HI VR+H + E +REGVL +KY  T +Q+ADI  K   K KF   K LL+
Sbjct:   30 LTAYCDSDFAGDVETRKSTTGYVIYFCGGPISWCSRKQPIVSLSSTEAEYIAAADCVKELLFLKSLIEEL-INTKVSKTLNVDNQSAIQLMKSGQFNRRSKHIDVRFHFLCEKVREGVLEVKYCPTNNQIADIFTKALGKQKFNVFKELLL 179          
BLAST of mRNA_H-paniculata_contig39508.10264.1 vs. uniprot
Match: A0A4Y9ZSL8_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZSL8_9AGAM)

HSP 1 Score: 142 bits (358), Expect = 1.560e-38
Identity = 70/145 (48.28%), Postives = 92/145 (63.45%), Query Frame = 1
Query:    1 LEGFVDADWAEDVEDRKSTTGYVLKLNGGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETIYLRELLRSIGFECRGSTTLFEDNESAINLSKGSGAHCKTMHIGVRWHGITEWIREGVLALKYAQTGDQLADILRKGRNKAKFQR 435
            L G+VDADWA DV DR+S +GY   L GGAISW S+KQ     SSTEAEY+ A  A KE  +LR  L  IG  C+ +T L  DN+SA+ ++     H +T HI +R+H + E +  G + L+Y  TGDQ+AD+L KG  KAK  +
Sbjct:  177 LTGYVDADWAGDVNDRRSISGYTFLLAGGAISWSSKKQNTTALSSTEAEYIVATHAAKEATWLRTFLSKIGRPCKAATLLLMDNQSAMAIAWNPAFHARTKHIDMRYHFLREKVEAGAINLQYVPTGDQVADVLMKGLVKAKHNK 321          
BLAST of mRNA_H-paniculata_contig39508.10264.1 vs. uniprot
Match: A0A1Y1N3K4_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3K4_PHOPY)

HSP 1 Score: 140 bits (352), Expect = 1.840e-38
Identity = 74/150 (49.33%), Postives = 99/150 (66.00%), Query Frame = 1
Query:    1 LEGFVDADWAEDVEDRKSTTGYVLKLNGGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETIYLRELLRSIGFECRGSTTLFEDNESAINLSKGSGAHCKTMHIGVRWHGITEWIREGVLALKYAQTGDQLADILRKGRNKAKFQRLKSLL 450
            + GF D+D+A DV+ RKSTTGYV  +  GAI+WCSR+QQ  + S+TEAEYVAA EA KE I+LR LL  I  +   +  L+ DN+SAI L K    H +T HI VR+H I E  + G + ++Y ++ DQLADIL K     KF +L++ L
Sbjct:  101 VHGFSDSDYASDVDTRKSTTGYVFNMANGAITWCSRRQQTTSVSTTEAEYVAAAEATKEAIWLRHLLSEISGKSIENVQLYVDNQSAIKLVKNPIFHKRTKHIDVRYHFIKEKFQNGDIKIEYVRSEDQLADILTKPLVSVKFNKLRTKL 250          
BLAST of mRNA_H-paniculata_contig39508.10264.1 vs. uniprot
Match: A0A4Z0A7X3_9AGAM (Uncharacterized protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Z0A7X3_9AGAM)

HSP 1 Score: 138 bits (348), Expect = 4.440e-38
Identity = 70/145 (48.28%), Postives = 91/145 (62.76%), Query Frame = 1
Query:    1 LEGFVDADWAEDVEDRKSTTGYVLKLNGGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETIYLRELLRSIGFECRGSTTLFEDNESAINLSKGSGAHCKTMHIGVRWHGITEWIREGVLALKYAQTGDQLADILRKGRNKAKFQR 435
            L G+VDADWA DV DR S +GY   L GGAISW S+KQ +   SSTEAEY+AA  A KE  +L   L  IG  C+ +T L  DN+SA+ ++     H +T HI VR+H + E +  G + L+Y   GDQ+AD+L KG  KAK  +
Sbjct:   79 LTGYVDADWAGDVNDRHSISGYTFLLAGGAISWSSKKQNMTALSSTEAEYIAAAHAAKEATWLCTFLSEIGRPCKAATLLLMDNQSAMAIAWNPVFHVQTKHIDVRYHFLREKVEAGAINLQYVPMGDQVADVLTKGLVKAKHDK 223          
BLAST of mRNA_H-paniculata_contig39508.10264.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM)

HSP 1 Score: 146 bits (368), Expect = 9.860e-38
Identity = 71/145 (48.97%), Postives = 94/145 (64.83%), Query Frame = 1
Query:    1 LEGFVDADWAEDVEDRKSTTGYVLKLNGGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETIYLRELLRSIGFECRGSTTLFEDNESAINLSKGSGAHCKTMHIGVRWHGITEWIREGVLALKYAQTGDQLADILRKGRNKAKFQR 435
            L G+VDADWA DV DR+S +GY   L GGA+SW S+KQ     SSTEAEY+AA  A KE  +LR  L  IG  C+ +T L  DN+SA+ +++    H +T HI VR+H + E +  G + L+Y  TGDQ+AD+L KG  KAK  +
Sbjct:  983 LTGYVDADWAGDVNDRRSISGYTFLLAGGAVSWSSKKQNTTALSSTEAEYIAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGLVKAKHDK 1127          
BLAST of mRNA_H-paniculata_contig39508.10264.1 vs. uniprot
Match: A0A7D9JFU5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JFU5_PARCT)

HSP 1 Score: 142 bits (357), Expect = 6.230e-37
Identity = 71/150 (47.33%), Postives = 99/150 (66.00%), Query Frame = 1
Query:    1 LEGFVDADWAEDVEDRKSTTGYVLKLNGGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETIYLRELLRSIGFECRGSTTLFEDNESAINLSKGSGAHCKTMHIGVRWHGITEWIREGVLALKYAQTGDQLADILRKGRNKAKFQRLKSLL 450
            L G+ DA+WA DV+ R+ST+GYV K+    +SWCS+KQ  VT S+TEAEYVA  +A +E I++R LL  IG +    TT++EDN+ AI +SK +  H +T HI VR+H + E +    + + Y  T   LADI+ KG  K  FQRL+S+L
Sbjct:  381 LYGYSDANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRRLLSDIGCKSEEPTTMYEDNQGAIEISKNARFHNRTKHIDVRFHFVREKVLSNEVKVIYCPTEHMLADIMTKGLTKKIFQRLRSML 530          
BLAST of mRNA_H-paniculata_contig39508.10264.1 vs. uniprot
Match: A0A816R0P7_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816R0P7_9BILA)

HSP 1 Score: 135 bits (341), Expect = 7.050e-37
Identity = 71/141 (50.35%), Postives = 95/141 (67.38%), Query Frame = 1
Query:    1 LEGFVDADWAEDVEDRKSTTGYVLKLNGGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETIYLRELLRSIGFECRGSTTLFEDNESAINLSKGSGAHCKTMHIGVRWHGITEWIREGVLALKYAQTGDQLADILRK--GRN 417
            L G+ DADW    EDRKSTTGY+  LNG  ISW S+KQQ V  SSTEAEY+A   A KE I+LR+LL+ +G E  G TT++EDN+S I ++  +  H +T HI V++H I + I+   +A+K+  T +QLAD + K  GRN
Sbjct:   92 LVGYADADWG-GAEDRKSTTGYLFLLNGSPISWTSKKQQTVALSSTEAEYIALAHATKEAIWLRKLLKDLGQEQIGPTTIYEDNQSTIAIANNTINHQRTKHIDVQFHFIRDKIKSNEIAVKHTSTNEQLADAMTKPLGRN 231          
BLAST of mRNA_H-paniculata_contig39508.10264.1 vs. uniprot
Match: A0A1X7SFX4_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SFX4_AMPQE)

HSP 1 Score: 134 bits (337), Expect = 7.520e-37
Identity = 63/149 (42.28%), Postives = 97/149 (65.10%), Query Frame = 1
Query:    1 LEGFVDADWAEDVEDRKSTTGYVLKLNGGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETIYLRELLRSIGFECRGSTTLFEDNESAINLSKGSGAHCKTMHIGVRWHGITEWIREGVLALKYAQTGDQLADILRKGRNKAKFQRLKSL 447
            L G+ DADW  DV++ +STTGY+ ++ G A+SW S++Q  V  S+ EAEY+A     +E +++REL   +  +  G TT+FEDN+SAI+++K    H +  HIG+++H I E +    + +KY +T D +ADI  KG    KF+RL+SL
Sbjct:   28 LVGYSDADWGGDVDNYRSTTGYIFQIGGVAVSWKSKRQDCVALSTAEAEYMALASTAQEAVWMRELNADMNNKPNGPTTIFEDNQSAISMAKNPQFHGRAKHIGIKYHFIREQVSTESVQIKYCRTEDMVADIFTKGLTHEKFERLRSL 176          
BLAST of mRNA_H-paniculata_contig39508.10264.1 vs. uniprot
Match: UPI000D3F8D86 (Ty1/Copia family ribonuclease HI n=1 Tax=Acinetobacter nosocomialis TaxID=106654 RepID=UPI000D3F8D86)

HSP 1 Score: 134 bits (337), Expect = 9.660e-37
Identity = 67/151 (44.37%), Postives = 98/151 (64.90%), Query Frame = 1
Query:    1 LEGFVDADWAEDVEDRKSTTGYVLKLNGGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETIYLRELLRSIG-FECRGSTTLFEDNESAINLSKGSGAHCKTMHIGVRWHGITEWIREGVLALKYAQTGDQLADILRKGRNKAKFQRLKSLL 450
            L+G+ DADWA D+E R+ST+GY   +NGG ISW S+KQ+ V  SSTEAEY+A  EA +E I+L+  L  IG  E + +  ++EDN+ +I L+K    H +T HI +R+H + E + +G + L+Y  T D LAD++ K     +F  L+S L
Sbjct:   29 LQGYSDADWAGDIETRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALTEATQEAIWLKAFLCEIGEMETKSAVKIYEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVEDGQVVLEYCSTKDMLADLMTKPITAVQFDFLRSKL 179          
BLAST of mRNA_H-paniculata_contig39508.10264.1 vs. uniprot
Match: A0A1J3D358_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3D358_NOCCA)

HSP 1 Score: 140 bits (354), Expect = 9.870e-37
Identity = 72/147 (48.98%), Postives = 99/147 (67.35%), Query Frame = 1
Query:    1 LEGFVDADWAEDVEDRKSTTGYVLKLNGGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETIYLRELLRSIGFECRGSTTLFEDNESAINLSKGSGAHCKTMHIGVRWHGITEWIREGVLALKYAQTGDQLADILRKGRNKAKFQRLK 441
            L G+ D+D+A D++D KST+GYV  L+GGA++W SRKQ +VT SSTEAEYVAA     + I+++ +L  IGFE     TLF DN S I LSK +  H K+ HI VR+H + E  +EG++ L +  T +QLADI+ K    A FQR++
Sbjct:  336 LLGYTDSDYAGDIDDCKSTSGYVFLLSGGAVAWSSRKQPIVTLSSTEAEYVAAATCACQAIWMKRVLGEIGFEQEDGMTLFCDNTSTIKLSKNAVMHGKSKHIRVRYHFLRELSKEGLVTLVHCNTEEQLADIMTKPLKMASFQRIR 482          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39508.10264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1L8J7_PHOPY3.650e-3949.01Uncharacterized protein (Fragment) n=1 Tax=Photinu... [more]
A0A4Y9ZSL8_9AGAM1.560e-3848.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1Y1N3K4_PHOPY1.840e-3849.33Uncharacterized protein n=2 Tax=Photinus pyralis T... [more]
A0A4Z0A7X3_9AGAM4.440e-3848.28Uncharacterized protein n=1 Tax=Hericium alpestre ... [more]
A0A4Y9ZY34_9AGAM9.860e-3848.97Integrase catalytic domain-containing protein n=1 ... [more]
A0A7D9JFU5_PARCT6.230e-3747.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A816R0P7_9BILA7.050e-3750.35Hypothetical protein n=1 Tax=Rotaria magnacalcarat... [more]
A0A1X7SFX4_AMPQE7.520e-3742.28Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
UPI000D3F8D869.660e-3744.37Ty1/Copia family ribonuclease HI n=1 Tax=Acinetoba... [more]
A0A1J3D358_NOCCA9.870e-3748.98Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39508contigH-paniculata_contig39508:442..897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score139.4
Seed ortholog evalue1.4e-30
Seed eggNOG ortholog7425.NV18849-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size456
Cds size456
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930210.688193-CDS-H-paniculata_contig39508:441..8971622930210.688193-CDS-H-paniculata_contig39508:441..897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39508 442..897 -
1691481192.4676752-CDS-H-paniculata_contig39508:441..8971691481192.4676752-CDS-H-paniculata_contig39508:441..897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39508 442..897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39508.10264.1prot_H-paniculata_contig39508.10264.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39508 442..897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39508.10264.1

>prot_H-paniculata_contig39508.10264.1 ID=prot_H-paniculata_contig39508.10264.1|Name=mRNA_H-paniculata_contig39508.10264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
LEGFVDADWAEDVEDRKSTTGYVLKLNGGAISWCSRKQQLVTWSSTEAEY
VAAGEAGKETIYLRELLRSIGFECRGSTTLFEDNESAINLSKGSGAHCKT
MHIGVRWHGITEWIREGVLALKYAQTGDQLADILRKGRNKAKFQRLKSLL
M*
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mRNA from alignment at H-paniculata_contig39508:442..897-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39508.10264.1 ID=mRNA_H-paniculata_contig39508.10264.1|Name=mRNA_H-paniculata_contig39508.10264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=456bp|location=Sequence derived from alignment at H-paniculata_contig39508:442..897- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGAAGGGTTCGTTGATGCCGATTGGGCGGAAGATGTCGAGGACCGAAA GTCCACAACAGGATACGTTTTAAAACTAAACGGTGGTGCGATAAGTTGGT GCTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGTACAGAGGCAGAGTAC GTTGCTGCAGGAGAAGCGGGGAAGGAGACGATATATCTTAGAGAGTTACT AAGATCGATAGGTTTCGAATGCAGGGGGAGTACGACATTGTTTGAGGACA ATGAATCAGCTATTAATCTCAGTAAGGGATCTGGCGCACACTGCAAGACA ATGCACATCGGAGTGCGCTGGCACGGAATTACAGAGTGGATTCGGGAAGG AGTATTGGCATTGAAATACGCGCAGACCGGCGACCAACTTGCTGACATTT TAAGGAAAGGACGAAACAAAGCAAAGTTTCAGAGACTGAAAAGTTTACTC ATGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig39508:442..897-

>mRNA_H-paniculata_contig39508.10264.1 ID=mRNA_H-paniculata_contig39508.10264.1|Name=mRNA_H-paniculata_contig39508.10264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig39508:442..897- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGAAGGGTTCGTTGATGCCGATTGGGCGGAAGATGTCGAGGACCGAAA
GTCCACAACAGGATACGTTTTAAAACTAAACGGTGGTGCGATAAGTTGGT
GCTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGTACAGAGGCAGAGTAC
GTTGCTGCAGGAGAAGCGGGGAAGGAGACGATATATCTTAGAGAGTTACT
AAGATCGATAGGTTTCGAATGCAGGGGGAGTACGACATTGTTTGAGGACA
ATGAATCAGCTATTAATCTCAGTAAGGGATCTGGCGCACACTGCAAGACA
ATGCACATCGGAGTGCGCTGGCACGGAATTACAGAGTGGATTCGGGAAGG
AGTATTGGCATTGAAATACGCGCAGACCGGCGACCAACTTGCTGACATTT
TAAGGAAAGGACGAAACAAAGCAAAGTTTCAGAGACTGAAAAGTTTACTC
ATGTGACTGGAAGGGTTCGTTGATGCCGATTGGGCGGAAGATGTCGAGGA
CCGAAAGTCCACAACAGGATACGTTTTAAAACTAAACGGTGGTGCGATAA
GTTGGTGCTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGTACAGAGGCA
GAGTACGTTGCTGCAGGAGAAGCGGGGAAGGAGACGATATATCTTAGAGA
GTTACTAAGATCGATAGGTTTCGAATGCAGGGGGAGTACGACATTGTTTG
AGGACAATGAATCAGCTATTAATCTCAGTAAGGGATCTGGCGCACACTGC
AAGACAATGCACATCGGAGTGCGCTGGCACGGAATTACAGAGTGGATTCG
GGAAGGAGTATTGGCATTGAAATACGCGCAGACCGGCGACCAACTTGCTG
ACATTTTAAGGAAAGGACGAAACAAAGCAAAGTTTCAGAGACTGAAAAGT
TTACTCATGTGA
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