mRNA_H-paniculata_contig39493.10258.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39493.10258.1
Unique NamemRNA_H-paniculata_contig39493.10258.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig39493.10258.1 vs. uniprot
Match: D7G5U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U9_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.820e-33
Identity = 66/97 (68.04%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:    1 GLRGHLQQLVEAARKYCGSGFSFCEQGRELASMLMNLQGESWFNRLGASAPALVSFGEVLGDIQNYEE-ALLQSLETTFCTPMEEFVKREVKTVRKV 288
            GLRG LQQLV  ARKYCG+G +FCE GRELA +LMN +GESWF RLGA APAL   G VLGDIQ ++E  LL+ LE  F  PME+FVK EVKT+RKV
Sbjct:  309 GLRGQLQQLVAVARKYCGNGLAFCEHGRELAGVLMNPRGESWFTRLGALAPALEELGRVLGDIQGFQEDILLRPLENAFY-PMEDFVKGEVKTIRKV 404
[Close]
BLAST of mRNA_H-paniculata_contig39493.10258.1 vs. uniprot
Match: A0A6H5L2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J8_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 3.620e-32
Identity = 65/97 (67.01%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:    1 GLRGHLQQLVEAARKYCGSGFSFCEQGRELASMLMNLQGESWFNRLGASAPALVSFGEVLGDIQNYEE-ALLQSLETTFCTPMEEFVKREVKTVRKV 288
            GLRG LQQLV  ARKYCG+G +FCE GRELA +LMN +GESWF RLGA APAL   G VLGDIQ ++E  LL+ LE  F  PME+FVK EVKT+RK+
Sbjct:   23 GLRGQLQQLVAVARKYCGNGLAFCEHGRELAGVLMNPRGESWFTRLGALAPALEELGRVLGDIQGFQEDVLLRPLENAFY-PMEDFVKGEVKTIRKM 118
[Close]
BLAST of mRNA_H-paniculata_contig39493.10258.1 vs. uniprot
Match: A0A7S1U8B4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8B4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.300e-15
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:    4 LRGHLQQLVEAARKYCGSGFSFCEQGRELASMLMNL---QGESWFNRLGASAPALVSFGEVLGDIQNYEEALLQSLETTFCTPMEEFVKREVKTVRKV 288
            LR  L  LV  ARKY  +G  +   GR+ A+ L++L   +G+     +G   PAL   G  + +IQ+Y +ALL S ETTFC P+E FV+REVK V ++
Sbjct:  116 LRSRLSSLVSKARKYVDAGNQYSNLGRKFAADLLDLHDTEGKKSAVNVGDLGPALAELGRTILEIQSYRDALLGSFETTFCAPLEFFVRREVKGVNRL 213
[Close]
BLAST of mRNA_H-paniculata_contig39493.10258.1 vs. uniprot
Match: A0A7R9YAC1_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAC1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.320e-14
Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = 1 
Query:    4 LRGHLQQLVEAARKYCGSGFSFCEQGRELASMLMNLQGESWFN-----RLGASAPALVSFGEVLGDIQNYEEALLQSLETTFCTPMEEFVKREVKTVRKV 288
            LR  LQ+LV+ AR Y  +G  +   GR  A+ L++L   +        R+G   P L   G+ + +IQ+Y +  L SLETTFC PME FVKRE+K VR++
Sbjct:  178 LRERLQRLVKCARDYVRAGNEYSRLGRLFAAELVDLHFRNGPKSASAVRVGDLGPVLAELGKTVEEIQSYRDTFLVSLETTFCAPMEAFVKREIKGVRQM 277
[Close]
BLAST of mRNA_H-paniculata_contig39493.10258.1 vs. uniprot
Match: A0A835ZCL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCL2_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 6.330e-9
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:  157 LVSFGEVLGDIQNYEEALLQSLETTFCTPMEEFVKREVKTVRKV 288
            LV FGE L +IQNY E LL S+ETTF  PMEEFVKREVK+V K+
Sbjct:  419 LVRFGETLDEIQNYMENLLLSMETTFSAPMEEFVKREVKSVFKM 462
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39493.10258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G5U9_ECTSI1.820e-3368.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2J8_9PHAE3.620e-3267.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1U8B4_9STRA3.300e-1542.86Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9YAC1_9STRA3.320e-1442.00Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A835ZCL2_9STRA6.330e-970.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39493contigH-paniculata_contig39493:227..1047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930209.9426234-CDS-H-paniculata_contig39493:226..3421622930209.9426234-CDS-H-paniculata_contig39493:226..342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39493 227..342 +
1691481192.0991747-CDS-H-paniculata_contig39493:226..3421691481192.0991747-CDS-H-paniculata_contig39493:226..342Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39493 227..342 +
1622930209.9571455-CDS-H-paniculata_contig39493:866..10471622930209.9571455-CDS-H-paniculata_contig39493:866..1047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39493 867..1047 +
1691481192.1081672-CDS-H-paniculata_contig39493:866..10471691481192.1081672-CDS-H-paniculata_contig39493:866..1047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39493 867..1047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39493.10258.1prot_H-paniculata_contig39493.10258.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39493 227..1047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39493.10258.1

>prot_H-paniculata_contig39493.10258.1 ID=prot_H-paniculata_contig39493.10258.1|Name=mRNA_H-paniculata_contig39493.10258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
GLRGHLQQLVEAARKYCGSGFSFCEQGRELASMLMNLQGESWFNRLGASA
PALVSFGEVLGDIQNYEEALLQSLETTFCTPMEEFVKREVKTVRKVGG*
back to top

mRNA from alignment at H-paniculata_contig39493:227..1047+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39493.10258.1 ID=mRNA_H-paniculata_contig39493.10258.1|Name=mRNA_H-paniculata_contig39493.10258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=821bp|location=Sequence derived from alignment at H-paniculata_contig39493:227..1047+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTTGCGAGGACACCTGCAGCAGTTGGTGGAAGCAGCGCGAAAGTACTG
CGGAAGCGGGTTTTCGTTTTGCGAGCAAGGACGGGAGCTGGCCAGCATGT
TGATGAACCTTCAAGGGTACGGAGATGATCGCAATACATACGTGAAAGCT
CGGAAGGAAAAAGCATTAGTTCAGGTTTTCCCATGGTCTCCTCGGGATAA
TAATAATAATTAAAAAAAACTGGTGTCTAGATTATGGCTCTTTTGGGGAA
CCGAACTTGGCAACGGCGTAAATAGAGATTAGCTAATGACTAGTCGTGAA
TAATAAAACATTAACGAATACGCCGAGAGAATATATAGCTAGCTCTAGAA
AGTTGGTGAGTGTAATTCAGGTGGAAATTTTGCCCGTTTTGGGGGACTTT
TTTTGGGGGGGGTACTGTAGAGCGAGTACGCACTAGTAAAGCTTTTTTCA
TTATGCCCAAATAATAAAGGTACTCCAGAGTTACGATTAGGAATGTTGTA
AGGTTCACCTATAAGGAGGTAATTATAATGAACAACGACCGTGCTAAACG
AGTGAGCCTGATTTTACGTGTTTAGCTATTTCACGTATTTTTTTCATATG
TGTTTTTCTTCTCGGATTTTTATTTTTTATTTTTTATCAGGGAGAGCTGG
TTCAACCGGTTAGGTGCCTCGGCGCCTGCTCTGGTATCCTTTGGCGAGGT
ACTCGGAGACATTCAAAATTACGAAGAGGCGTTATTGCAATCCCTCGAAA
CCACATTCTGCACTCCGATGGAGGAATTCGTTAAGCGCGAGGTCAAGACT
GTCCGCAAGGTGGGTGGGTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig39493:227..1047+

>mRNA_H-paniculata_contig39493.10258.1 ID=mRNA_H-paniculata_contig39493.10258.1|Name=mRNA_H-paniculata_contig39493.10258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig39493:227..1047+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTTGCGAGGACACCTGCAGCAGTTGGTGGAAGCAGCGCGAAAGTACTG
CGGAAGCGGGTTTTCGTTTTGCGAGCAAGGACGGGAGCTGGCCAGCATGT
TGATGAACCTTCAAGGGGGTTGCGAGGACACCTGCAGCAGTTGGTGGAAG
CAGCGCGAAAGTACTGCGGAAGCGGGTTTTCGTTTTGCGAGCAAGGACGG
GAGCTGGCCAGCATGTTGATGAACCTTCAAGGGGAGAGCTGGTTCAACCG
GTTAGGTGCCTCGGCGCCTGCTCTGGTATCCTTTGGCGAGGTACTCGGAG
ACATTCAAAATTACGAAGAGGCGTTATTGCAATCCCTCGAAACCACATTC
TGCACTCCGATGGAGGAATTCGTTAAGCGCGAGGTCAAGACTGTCCGCAA
GGTGGGTGGGTAGGGAGAGCTGGTTCAACCGGTTAGGTGCCTCGGCGCCT
GCTCTGGTATCCTTTGGCGAGGTACTCGGAGACATTCAAAATTACGAAGA
GGCGTTATTGCAATCCCTCGAAACCACATTCTGCACTCCGATGGAGGAAT
TCGTTAAGCGCGAGGTCAAGACTGTCCGCAAGGTGGGTGGGTAG
back to top