mRNA_H-paniculata_contig39480.10255.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39480.10255.1
Unique NamemRNA_H-paniculata_contig39480.10255.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig39480.10255.1 vs. uniprot
Match: A0A6B7EW31_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EW31_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 1.020e-62
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 1 
Query:    1 MNHAILVVRVIGEPVHLVYKEYETIEIKVQFPVLRQKDSRGELTLLLWGDYRNDFLKYYKVQDHLIIEGTLTLKGYKNGENEAKVIVKRLYPFLLV 288
            MNHAI VV+VIGEPVHLVYKEYETIEIKVQFPVLRQKDSRGELTLLLWGDYRNDFLKYYKVQDHLIIEGTLTLKGYKNGENEAKVIVKRLYPFLLV
Sbjct:    1 MNHAIFVVKVIGEPVHLVYKEYETIEIKVQFPVLRQKDSRGELTLLLWGDYRNDFLKYYKVQDHLIIEGTLTLKGYKNGENEAKVIVKRLYPFLLV 96
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BLAST of mRNA_H-paniculata_contig39480.10255.1 vs. uniprot
Match: A0A344PFF5_9PHAE (Uncharacterized protein n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PFF5_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 4.180e-53
Identity = 78/95 (82.11%), Postives = 90/95 (94.74%), Query Frame = 1 
Query:    1 MNHAILVVRVIGEPVHLVYKEYETIEIKVQFPVLRQKDSRGELTLLLWGDYRNDFLKYYKVQDHLIIEGTLTLKGYKNGENEAKVIVKRLYPFLL 285
            MNHA+ VV+V+ +PVHL +KEY+TIEIKVQFP+LRQKDSR ELTLLLWGDYRNDFLKYYKVQD+LII+GTLTLKGY+NGEN+ KVIVKR+YPFLL
Sbjct:    1 MNHAVFVVKVVDKPVHLNFKEYKTIEIKVQFPILRQKDSRSELTLLLWGDYRNDFLKYYKVQDYLIIQGTLTLKGYENGENKPKVIVKRIYPFLL 95
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BLAST of mRNA_H-paniculata_contig39480.10255.1 vs. uniprot
Match: A0A1I9LVZ4_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVZ4_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 1.200e-52
Identity = 79/95 (83.16%), Postives = 88/95 (92.63%), Query Frame = 1 
Query:    1 MNHAILVVRVIGEPVHLVYKEYETIEIKVQFPVLRQKDSRGELTLLLWGDYRNDFLKYYKVQDHLIIEGTLTLKGYKNGENEAKVIVKRLYPFLL 285
            MNH I VVRV+ +PVHL+YKE+ETI+IKV+FPVLRQKDS+ EL LLLWGDYRNDFLKYYKVQD+LIIEGTLTLKGYKN ENE KVIVKR+YPFLL
Sbjct:    1 MNHTIFVVRVVDDPVHLIYKEHETIQIKVRFPVLRQKDSKSELILLLWGDYRNDFLKYYKVQDYLIIEGTLTLKGYKNMENEPKVIVKRIYPFLL 95
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BLAST of mRNA_H-paniculata_contig39480.10255.1 vs. uniprot
Match: A0A7T8G4B7_SCYLO (Ycf41 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G4B7_SCYLO)

HSP 1 Score: 168 bits (426), Expect = 1.310e-52
Identity = 79/96 (82.29%), Postives = 89/96 (92.71%), Query Frame = 1 
Query:    1 MNHAILVVRVIGEPVHLVYKEYETIEIKVQFPVLRQKDSRGELTLLLWGDYRNDFLKYYKVQDHLIIEGTLTLKGYKNGENEAKVIVKRLYPFLLV 288
            MNHA+ VV+++ +P+HL YKEYETIEIKVQFPVLRQKDSR ELTLLLWGDYRNDFLKYYKVQD+LII+G LTLKGYK+ ENE KVIVKR+YPFLLV
Sbjct:    4 MNHAVFVVKLVEKPIHLNYKEYETIEIKVQFPVLRQKDSRSELTLLLWGDYRNDFLKYYKVQDYLIIQGILTLKGYKDRENEPKVIVKRIYPFLLV 99
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BLAST of mRNA_H-paniculata_contig39480.10255.1 vs. uniprot
Match: A0A8F0FA42_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FA42_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 7.190e-45
Identity = 71/95 (74.74%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:    1 MNHAILVVRVIGEPVHLVYKEYETIEIKVQFPVLRQKDSRGELTLLLWGDYRNDFLKYYKVQDHLIIEGTLTLKGYKNGENEAKVIVKRLYPFLL 285
            MNHAILVV+VI  PV+L YKEY+ IEIKV+FPV RQK+S  ELTLLLW D++ DF+KYYKVQD+LIIEGTL LKGYK  EN+AK+IVKR+YPFLL
Sbjct:    1 MNHAILVVKVISNPVYLTYKEYQVIEIKVEFPVSRQKNSGKELTLLLWSDHQGDFVKYYKVQDYLIIEGTLILKGYKTIENKAKIIVKRIYPFLL 95
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BLAST of mRNA_H-paniculata_contig39480.10255.1 vs. uniprot
Match: D1J6Z6_ECTSI (Uncharacterized protein ycf41 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J6Z6_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.450e-44
Identity = 72/96 (75.00%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:    1 MNHAILVVRVIGEPVHLVYKEYETIEIKVQFPVLRQKDSRGELTLLLWGDYRNDFLKYYKVQDHLIIEGTLTLKGYKNGENEAKVIVKRLYPFLLV 288
            MNHAI VVR++ +P++L+Y E + IEIK QFPVLRQKDSR ELTLLLWGDY   FLK YKV+D+LIIEGTLT KGYKN  NEAKVIVKR+YPFLLV
Sbjct:    1 MNHAIFVVRLVEKPINLIYNEDKPIEIKAQFPVLRQKDSRSELTLLLWGDYLTKFLKEYKVKDYLIIEGTLTWKGYKNRGNEAKVIVKRIYPFLLV 96
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BLAST of mRNA_H-paniculata_contig39480.10255.1 vs. uniprot
Match: A0A0R6LV88_UNDPI (Uncharacterized protein n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A0R6LV88_UNDPI)

HSP 1 Score: 145 bits (366), Expect = 1.690e-43
Identity = 66/96 (68.75%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:    1 MNHAILVVRVIGEPVHLVYKEYETIEIKVQFPVLRQKDSRGELTLLLWGDYRNDFLKYYKVQDHLIIEGTLTLKGYKNGENEAKVIVKRLYPFLLV 288
            MNHAI VV+VI +PVHL+YKE +++EIKV+FP+LRQK+S+ EL LLLWGDY+ DF+KYYK QD+LIIEG LT  GY N  NE K+IVK+LYPFLL+
Sbjct:    1 MNHAIFVVKVIEKPVHLIYKECQSMEIKVKFPILRQKNSKNELKLLLWGDYKGDFIKYYKTQDYLIIEGILTSTGYVNEANEVKIIVKKLYPFLLI 96
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BLAST of mRNA_H-paniculata_contig39480.10255.1 vs. uniprot
Match: A0A8F0F883_9PHAE (Uncharacterized protein n=1 Tax=Postelsia palmaeformis TaxID=105414 RepID=A0A8F0F883_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.980e-42
Identity = 66/96 (68.75%), Postives = 81/96 (84.38%), Query Frame = 1 
Query:    1 MNHAILVVRVIGEPVHLVYKEYETIEIKVQFPVLRQKDSRGELTLLLWGDYRNDFLKYYKVQDHLIIEGTLTLKGYKNGENEAKVIVKRLYPFLLV 288
            MNH I VV+VIG+PV L+YKE +++EIKV+FP  RQK+S  ELTLLLWGDY+ DF+KYYK Q +LIIEGT+T KGY + ENE K+IVK+LYPFLLV
Sbjct:    1 MNHGIFVVKVIGKPVQLIYKECQSMEIKVKFPARRQKNSINELTLLLWGDYKGDFVKYYKTQGYLIIEGTITSKGYADEENEVKIIVKKLYPFLLV 96
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BLAST of mRNA_H-paniculata_contig39480.10255.1 vs. uniprot
Match: A0A7U1AQP6_9PHAE (Uncharacterized protein n=12 Tax=Laminariales TaxID=2886 RepID=A0A7U1AQP6_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 3.070e-42
Identity = 68/99 (68.69%), Postives = 83/99 (83.84%), Query Frame = 1 
Query:    1 MNHAILVVRVIGEPVHLVYKEYETIEIKVQFPVLRQKDSRGELTLLLWGDYRNDFLKYYKVQDHLIIEGTLTLKGYKNGENE---AKVIVKRLYPFLLV 288
            MNHAI VV+VI +PVHL+YKEY+ +EIKV+FP  R+K+S  ELTLLLWG+Y+ DF+KYYK QD+LIIEGTLT KGY N ENE    K+IVK+LYPFLL+
Sbjct:    1 MNHAIFVVKVIEKPVHLIYKEYQYMEIKVKFPAPRKKNSINELTLLLWGNYKGDFVKYYKTQDYLIIEGTLTSKGYANEENEINETKIIVKKLYPFLLI 99
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BLAST of mRNA_H-paniculata_contig39480.10255.1 vs. uniprot
Match: A0A8F0F9F9_9PHAE (Uncharacterized protein n=1 Tax=Laminaria ephemera TaxID=309364 RepID=A0A8F0F9F9_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 4.370e-42
Identity = 69/99 (69.70%), Postives = 83/99 (83.84%), Query Frame = 1 
Query:    1 MNHAILVVRVIGEPVHLVYKEYETIEIKVQFPVLRQKDSRGELTLLLWGDYRNDFLKYYKVQDHLIIEGTLTLKGYKNGENE---AKVIVKRLYPFLLV 288
            MNHAI VV+VI +PVHL+YKE ++IEIKV+FP  R+K+S  EL LLLWGDY+ DF+KYYK QD+LIIEGTLT KGY N ENE   AK+IVK+LYPFLL+
Sbjct:    1 MNHAIFVVKVIEKPVHLIYKECQSIEIKVKFPAPRKKNSINELKLLLWGDYKGDFVKYYKTQDYLIIEGTLTSKGYVNEENEMNEAKIIVKKLYPFLLI 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39480.10255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B7EW31_9PHAE1.020e-6297.92Uncharacterized protein n=1 Tax=Cladosiphon okamur... [more]
A0A344PFF5_9PHAE4.180e-5382.11Uncharacterized protein n=1 Tax=Endarachne bingham... [more]
A0A1I9LVZ4_9PHAE1.200e-5283.16Uncharacterized protein n=1 Tax=Pleurocladia lacus... [more]
A0A7T8G4B7_SCYLO1.310e-5282.29Ycf41 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0... [more]
A0A8F0FA42_9PHAE7.190e-4574.74Uncharacterized protein n=1 Tax=Chorda asiatica Ta... [more]
D1J6Z6_ECTSI1.450e-4475.00Uncharacterized protein ycf41 n=2 Tax=Ectocarpus s... [more]
A0A0R6LV88_UNDPI1.690e-4368.75Uncharacterized protein n=1 Tax=Undaria pinnatifid... [more]
A0A8F0F883_9PHAE1.980e-4268.75Uncharacterized protein n=1 Tax=Postelsia palmaefo... [more]
A0A7U1AQP6_9PHAE3.070e-4268.69Uncharacterized protein n=12 Tax=Laminariales TaxI... [more]
A0A8F0F9F9_9PHAE4.370e-4269.70Uncharacterized protein n=1 Tax=Laminaria ephemera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39480contigH-paniculata_contig39480:267..557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930209.6243887-CDS-H-paniculata_contig39480:266..5571622930209.6243887-CDS-H-paniculata_contig39480:266..557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39480 267..557 +
1691481191.9599822-CDS-H-paniculata_contig39480:266..5571691481191.9599822-CDS-H-paniculata_contig39480:266..557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39480 267..557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39480.10255.1prot_H-paniculata_contig39480.10255.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39480 267..557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39480.10255.1

>prot_H-paniculata_contig39480.10255.1 ID=prot_H-paniculata_contig39480.10255.1|Name=mRNA_H-paniculata_contig39480.10255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
MNHAILVVRVIGEPVHLVYKEYETIEIKVQFPVLRQKDSRGELTLLLWGD
YRNDFLKYYKVQDHLIIEGTLTLKGYKNGENEAKVIVKRLYPFLLV*
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mRNA from alignment at H-paniculata_contig39480:267..557+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39480.10255.1 ID=mRNA_H-paniculata_contig39480.10255.1|Name=mRNA_H-paniculata_contig39480.10255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at H-paniculata_contig39480:267..557+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATCATGCTATTTTAGTTGTAAGAGTTATAGGAGAACCTGTCCACTT
AGTTTATAAAGAATATGAAACCATTGAAATTAAAGTTCAATTCCCAGTTC
TTCGACAAAAAGATTCTAGGGGTGAATTAACACTTCTACTTTGGGGTGAT
TATCGAAATGATTTTTTGAAGTATTATAAAGTTCAAGACCATTTAATTAT
TGAAGGGACATTAACTTTGAAAGGTTATAAAAATGGAGAAAATGAAGCAA
AAGTTATTGTTAAAAGACTTTACCCATTTTTACTAGTTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig39480:267..557+

>mRNA_H-paniculata_contig39480.10255.1 ID=mRNA_H-paniculata_contig39480.10255.1|Name=mRNA_H-paniculata_contig39480.10255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig39480:267..557+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATCATGCTATTTTAGTTGTAAGAGTTATAGGAGAACCTGTCCACTT
AGTTTATAAAGAATATGAAACCATTGAAATTAAAGTTCAATTCCCAGTTC
TTCGACAAAAAGATTCTAGGGGTGAATTAACACTTCTACTTTGGGGTGAT
TATCGAAATGATTTTTTGAAGTATTATAAAGTTCAAGACCATTTAATTAT
TGAAGGGACATTAACTTTGAAAGGTTATAAAAATGGAGAAAATGAAGCAA
AAGTTATTGTTAAAAGACTTTACCCATTTTTACTAGTTTAAATGAATCAT
GCTATTTTAGTTGTAAGAGTTATAGGAGAACCTGTCCACTTAGTTTATAA
AGAATATGAAACCATTGAAATTAAAGTTCAATTCCCAGTTCTTCGACAAA
AAGATTCTAGGGGTGAATTAACACTTCTACTTTGGGGTGATTATCGAAAT
GATTTTTTGAAGTATTATAAAGTTCAAGACCATTTAATTATTGAAGGGAC
ATTAACTTTGAAAGGTTATAAAAATGGAGAAAATGAAGCAAAAGTTATTG
TTAAAAGACTTTACCCATTTTTACTAGTTTAA
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