mRNA_H-paniculata_contig3944.10250.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3944.10250.1
Unique NamemRNA_H-paniculata_contig3944.10250.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Match: D7G8N0_ECTSI (50S ribosomal protein L24, chloroplastic n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8N0_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 2.200e-72
Identity = 125/147 (85.03%), Postives = 134/147 (91.16%), Query Frame = 2 
Query:  572 VKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKDLFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITREKANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAADVNVNMAGVD 1012
            +KLNP+  SSRRKSRKAHFGAHSE RRVLMSAGLSKDLFEKYNVRSLPVR GDEVMVVRGA+KNREGK+ETCYRRKFVIH+ERITREKANGNTVHVGIHPSKV ITK+KMDK R  LL RKDR+R+GGKPA  A AAD +VNMAGVD
Sbjct:   27 MKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKYNVRSLPVRAGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRVALLARKDRSRNGGKPA--AGAADADVNMAGVD 171
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BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Match: A0A835YVZ0_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVZ0_9STRA)

HSP 1 Score: 192 bits (488), Expect = 4.320e-55
Identity = 101/147 (68.71%), Postives = 120/147 (81.63%), Query Frame = 2 
Query:  572 VKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKDLFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITREKANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAADVNVNMAGVD 1012
            +K+NP+  SSRRKSRKAHF A S QRR++MSA LSK+L  KYNVRS+PVRK DEVMVVRG +KNREGK+  CYRRK+VIH+ER+TREKANG TV +GIHPSKVVITKLK+DK RK+LLERK R    G    +  A++ +VNMAGVD
Sbjct:    1 MKVNPNVSSSRRKSRKAHFTAPSHQRRIIMSASLSKELQAKYNVRSVPVRKDDEVMVVRGHYKNREGKVTACYRRKYVIHIERVTREKANGATVQIGIHPSKVVITKLKLDKDRKELLERKQRKSKAG---AAKKASEKDVNMAGVD 144
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BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Match: A0A1V9ZGA6_9STRA (50S ribosomal protein L24, chloroplastic n=2 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGA6_9STRA)

HSP 1 Score: 182 bits (462), Expect = 4.170e-51
Identity = 100/149 (67.11%), Postives = 115/149 (77.18%), Query Frame = 2 
Query:  566 SSVKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKDLFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITREKANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAADVNVNMAGVD 1012
            +S K N +  SSRRK RKAHFGAHS QRRVLMSA LSKDL  KYNVRS+P+RK DEV +VRG+FKNREG++  CYR+KFVIHVER+ +EK NG  V VGIHPSKVVITKLK+DK RK++LERK+R   G K  G    ADV   MA VD
Sbjct:   13 ASAKFNSTVTSSRRKCRKAHFGAHSTQRRVLMSANLSKDLQAKYNVRSMPIRKDDEVTIVRGSFKNREGRVTQCYRKKFVIHVERVVKEKVNGAAVPVGIHPSKVVITKLKLDKDRKKILERKNRA-IGDKNKGKFTEADVA--MANVD 158
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BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Match: T0Q9Y6_SAPDV (50S ribosomal protein L24, chloroplastic n=4 Tax=Saprolegniaceae TaxID=4764 RepID=T0Q9Y6_SAPDV)

HSP 1 Score: 181 bits (459), Expect = 7.270e-51
Identity = 99/147 (67.35%), Postives = 114/147 (77.55%), Query Frame = 2 
Query:  572 VKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKDLFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITREKANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAADVNVNMAGVD 1012
            +K N +  SSRRK RKAHFGAHS QRRVLMSA LSKDL  KYNVRS+P+RK DEV +VRG+FKNREG++  CYR+KFVIHVER+ +EK NG  V VGIHPSKVVITKLK+DK RK++LERK+R   G K  G    ADV   MA VD
Sbjct:    1 MKFNSTVTSSRRKCRKAHFGAHSTQRRVLMSANLSKDLQSKYNVRSMPIRKDDEVTIVRGSFKNREGRVTQCYRKKFVIHVERVVKEKVNGAAVPVGIHPSKVVITKLKLDKDRKKILERKNRA-VGDKNKGKFTEADVA--MANVD 144
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BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Match: A0A3R5U3L5_9STRA (50S ribosomal protein L24, chloroplastic n=4 Tax=Eustigmatophyceae TaxID=5747 RepID=A0A3R5U3L5_9STRA)

HSP 1 Score: 179 bits (455), Expect = 2.950e-50
Identity = 96/147 (65.31%), Postives = 115/147 (78.23%), Query Frame = 2 
Query:  572 VKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKDLFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITREKANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAADVNVNMAGVD 1012
            VK NP+  SSRRKSRK HF A S  RR++MSA LSKDL  KY VRS+P+RK DEV VVRG+FKNR+GK+   YR+KFVIH++R+TREKANG TV+VGIHPSKV+ITKLK++K RK +LERK RT +  K  G    ADVN  +AGVD
Sbjct:    2 VKFNPNVSSSRRKSRKQHFTAPSHVRRIIMSAPLSKDLRAKYKVRSIPIRKEDEVTVVRGSFKNRDGKVTQVYRKKFVIHIDRVTREKANGATVNVGIHPSKVIITKLKLNKSRKAILERKARTSAADKNKGKLTEADVN--LAGVD 146
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BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Match: A0A451FLG4_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Eustigmatophyceae sp. Mont 10/10-1w TaxID=2506145 RepID=A0A451FLG4_9STRA)

HSP 1 Score: 176 bits (447), Expect = 4.140e-49
Identity = 98/147 (66.67%), Postives = 111/147 (75.51%), Query Frame = 2 
Query:  572 VKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKDLFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITREKANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAADVNVNMAGVD 1012
            +K NP+  SSRRKSRKAHF A S  RRVLMSA LSKDL  KY VRS+P+RK DEV VVRG  KN +GK+   YR+KFVIH++RITREKANG TV+VGIHPSKVVITKLKM+K RK +LERK R     K  G    ADVN  +AGVD
Sbjct:    1 MKFNPNVSSSRRKSRKAHFSAPSHMRRVLMSAPLSKDLQAKYKVRSMPIRKEDEVTVVRGRHKNSDGKVTQVYRKKFVIHIDRITREKANGATVNVGIHPSKVVITKLKMNKSRKAILERKARKSDADKAKGKFTEADVN--LAGVD 145
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BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Match: A0A6G0XDX3_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XDX3_9STRA)

HSP 1 Score: 184 bits (468), Expect = 4.360e-49
Identity = 108/192 (56.25%), Postives = 130/192 (67.71%), Query Frame = 2 
Query:  455 WRYSRDFAPRLLTRRLRNASPCLN------HGMDIFVFYFFWVSSVKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKDLFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITREKANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAADVNVNMAGVD 1012
            W       P +LT+ L  +   L        G D    +F   S +K N +  SSRRKSRKAHFGAHS QRRVLMSA LSKDL +KYNVRS+P+RK DEV +VRG +KNREG++   YR+KFVIHVER+ +EKANG  V++GIHPSKVVITKLK+DK RK++LERK+R   G K  G    ADV   MA VD
Sbjct:  206 WSKEGGIMPEVLTQFLAFSEAILGSTHWPWRGKD----HFTLSSKMKFNSTVSSSRRKSRKAHFGAHSTQRRVLMSANLSKDLQQKYNVRSIPIRKDDEVTIVRGTYKNREGRVTQVYRKKFVIHVERVVKEKANGAAVNIGIHPSKVVITKLKLDKDRKKILERKNRA-VGDKNKGKFTEADVA--MANVD 390
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BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Match: A0A7J6P5Z0_PEROL (60S ribosomal protein L26 n=7 Tax=Alveolata TaxID=33630 RepID=A0A7J6P5Z0_PEROL)

HSP 1 Score: 175 bits (443), Expect = 1.480e-48
Identity = 92/147 (62.59%), Postives = 118/147 (80.27%), Query Frame = 2 
Query:  572 VKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKDLFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITREKANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAADVNVNMAGVD 1012
            +K +P+  SSRRKSRKAHF A S+QRR++MSA LSK+L  KYNVRS+P+RK DEVMVVRG + +REGK+  CYR+KFVIH+ER+TR+K NG+  +VG+HPSKVVITKLKMDK RK LLERK+R++  GK + +    + +V MA VD
Sbjct:    1 MKFSPAVSSSRRKSRKAHFTAPSDQRRIIMSAPLSKELRAKYNVRSVPIRKDDEVMVVRGHYSDREGKVTACYRKKFVIHIERLTRDKVNGSHANVGVHPSKVVITKLKMDKDRKALLERKNRSKDSGKKSYT----EKDVAMAQVD 143
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BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Match: A0A7S2V566_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V566_9STRA)

HSP 1 Score: 174 bits (440), Expect = 4.270e-48
Identity = 94/147 (63.95%), Postives = 108/147 (73.47%), Query Frame = 2 
Query:  572 VKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKDLFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITREKANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAADVNVNMAGVD 1012
            +K+  +  SSRRKSRKAHF AHS  RRV+MSA LSKDL  KYNVRS+P+RK DEV V RG FKNREGK+  CYR+K+V+HVER T+EK NG  VHVGI PS VVITKLK+DK RK +LERKDR +   K  G     DVN  M  VD
Sbjct:    1 MKVKNTVSSSRRKSRKAHFSAHSTARRVIMSAPLSKDLQAKYNVRSMPIRKDDEVQVTRGYFKNREGKVVQCYRKKYVVHVERCTKEKTNGAQVHVGIAPSNVVITKLKLDKNRKAILERKDRAKGAEKGKGKYTETDVN--MGNVD 145
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BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Match: UPI0009010D6A (60S ribosomal protein L26-1-like n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI0009010D6A)

HSP 1 Score: 174 bits (440), Expect = 4.860e-48
Identity = 93/139 (66.91%), Postives = 108/139 (77.70%), Query Frame = 2 
Query:  572 VKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKDLFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITREKANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAADV 988
            +K NP   SSRRKSRKAHF A S  RRVLMSA LS DL  KYNVRS+PVRK DEVMVVRG +K R+GK+   YR+K+VIH+ERITREK NG+TV+VGIHPSKVV+TKLK+DK RK LL+RK + R+ GK  G     DV
Sbjct:    1 MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSSDLRNKYNVRSIPVRKDDEVMVVRGTYKGRDGKVVQVYRKKWVIHIERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKALLDRKAKGRAAGKDKGKFTVEDV 139
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8N0_ECTSI2.200e-7285.0350S ribosomal protein L24, chloroplastic n=2 Tax=E... [more]
A0A835YVZ0_9STRA4.320e-5568.7150S ribosomal protein L24, chloroplastic n=1 Tax=T... [more]
A0A1V9ZGA6_9STRA4.170e-5167.1150S ribosomal protein L24, chloroplastic n=2 Tax=A... [more]
T0Q9Y6_SAPDV7.270e-5167.3550S ribosomal protein L24, chloroplastic n=4 Tax=S... [more]
A0A3R5U3L5_9STRA2.950e-5065.3150S ribosomal protein L24, chloroplastic n=4 Tax=E... [more]
A0A451FLG4_9STRA4.140e-4966.6750S ribosomal protein L24, chloroplastic n=1 Tax=E... [more]
A0A6G0XDX3_9STRA4.360e-4956.2550S ribosomal protein L24, chloroplastic n=1 Tax=A... [more]
A0A7J6P5Z0_PEROL1.480e-4862.5960S ribosomal protein L26 n=7 Tax=Alveolata TaxID=... [more]
A0A7S2V566_9STRA4.270e-4863.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI0009010D6A4.860e-4866.9160S ribosomal protein L26-1-like n=1 Tax=Ipomoea n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3944contigH-paniculata_contig3944:749..3267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score242.7
Seed ortholog evalue1.2e-61
Seed eggNOG ortholog2880.D7G8N0
Preferred nameRPL26
KEGG koko:K02898,ko:K18449,ko:K20068
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000184,GO:0000278,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006974,GO:0006977,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009266,GO:0009314,GO:0009409,GO:0009411,GO:0009416,GO:0009507,GO:0009536,GO:0009605,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010212,GO:0010332,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0010948,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022402,GO:0022613,GO:0022625,GO:0022626,GO:0023051,GO:0023052,GO:0023056,GO:0030330,GO:0030424,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031570,GO:0031571,GO:0031667,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032991,GO:0033036,GO:0033267,GO:0033365,GO:0033554,GO:0034248,GO:0034250,GO:0034470,GO:0034613,GO:0034641,GO:0034644,GO:0034645,GO:0034655,GO:0034660,GO:0035556,GO:0042254,GO:0042273,GO:0042594,GO:0042770,GO:0042788,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043195,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043516,GO:0043517,GO:0043603,GO:0043604,GO:0043679,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044306,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045047,GO:0045184,GO:0045202,GO:0045727,GO:0045786,GO:0045787,GO:0045930,GO:0046483,GO:0046700,GO:0046907,GO:0048027,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071156,GO:0071158,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071482,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090150,GO:0090304,GO:0097159,GO:0097458,GO:0098588,GO:0098793,GO:0098805,GO:0104004,GO:0120025,GO:0120038,GO:0150034,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902162,GO:1902164,GO:1902165,GO:1902167,GO:1902229,GO:1902231,GO:1902253,GO:1902255,GO:1902400,GO:1902402,GO:1902403,GO:1902531,GO:1902533,GO:1902806,GO:1902807,GO:1903047,GO:1904803,GO:1990904,GO:1990928,GO:2000045,GO:2000112,GO:2000134,GO:2001020,GO:2001022,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.regulation of translation involved in cellular response to UV
EggNOG OGsCOG0198@1,KOG3401@2759
Ec32 ortholog description60S ribosomal protein L26
Ec32 orthologEc-22_002330.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04131
Exons3
Model size1764
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3944.10250.1prot_H-paniculata_contig3944.10250.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3944 1498..2735 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930209.0037923-UTR-H-paniculata_contig3944:748..14971622930209.0037923-UTR-H-paniculata_contig3944:748..1497Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3944 749..1497 -
1691481191.717722-UTR-H-paniculata_contig3944:748..14971691481191.717722-UTR-H-paniculata_contig3944:748..1497Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3944 749..1497 -
1622930209.0878656-UTR-H-paniculata_contig3944:2735..32671622930209.0878656-UTR-H-paniculata_contig3944:2735..3267Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3944 2736..3267 -
1691481191.7548137-UTR-H-paniculata_contig3944:2735..32671691481191.7548137-UTR-H-paniculata_contig3944:2735..3267Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3944 2736..3267 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930209.0176888-CDS-H-paniculata_contig3944:1497..16701622930209.0176888-CDS-H-paniculata_contig3944:1497..1670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3944 1498..1670 -
1691481191.7293632-CDS-H-paniculata_contig3944:1497..16701691481191.7293632-CDS-H-paniculata_contig3944:1497..1670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3944 1498..1670 -
1622930209.03689-CDS-H-paniculata_contig3944:1933..20751622930209.03689-CDS-H-paniculata_contig3944:1933..2075Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3944 1934..2075 -
1691481191.7368226-CDS-H-paniculata_contig3944:1933..20751691481191.7368226-CDS-H-paniculata_contig3944:1933..2075Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3944 1934..2075 -
1622930209.0671484-CDS-H-paniculata_contig3944:2567..27351622930209.0671484-CDS-H-paniculata_contig3944:2567..2735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3944 2568..2735 -
1691481191.747277-CDS-H-paniculata_contig3944:2567..27351691481191.747277-CDS-H-paniculata_contig3944:2567..2735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3944 2568..2735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3944.10250.1

>prot_H-paniculata_contig3944.10250.1 ID=prot_H-paniculata_contig3944.10250.1|Name=mRNA_H-paniculata_contig3944.10250.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp
MDIFVFYFFWVSSVKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKD
LFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITRE
KANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAA
DVNVNMAGVD*
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mRNA from alignment at H-paniculata_contig3944:749..3267-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3944.10250.1 ID=mRNA_H-paniculata_contig3944.10250.1|Name=mRNA_H-paniculata_contig3944.10250.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2519bp|location=Sequence derived from alignment at H-paniculata_contig3944:749..3267- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATTGAAATAGGCAGTGTCTGTTACTGTACTTGAATAATGTTGAATG
TTGAATGTTTTGATGTGCATAGTTGACATTGAAAGTGCAGTGACATTGGT
CAGGCATAGGCCTTACATTCGGAACGAAAGAACACGAATAATGATGAAAA
ATCGCACGTCGGGTCGGTGGAGCGGGTTCGAACTGATGATTTTGTTGCAC
CTGAAAATACTGGGAAATGGACTGGTTTATTGTATTCATTTCATCCAAAG
ACTTGCGTGTGGTAGAGCGGGGTAAACGTGAGTCCCCTACTTGAATTCAA
AACCAATGTGTGGGTGCAGAAGTCATGGTCGGGACGGTTTCACACGGGTG
GCAGATTGGATTCGTGGCATGGGTCCGCTCGCTCCCTACTGAGCCATAAA
TCGGTCCCTTTGTCAACGTTCGCCAAAAACGAAAAGTAGTCAACAGGATT
CTTGTGGAGATATTCTCGAGATTTTGCTCCGCGTTTGCTGACCCGTCGTC
TTCGCAACGCCTCGCCTTGTTTGAATCATGGTATGGACATTTTCGTCTTT
TATTTCTTTTGGGTGTCCTCAGTGAAGCTTAACCCGAGCAAGCCCTCATC
CCGGCGCAAGAGCCGGAAGGCCCACTTTGGTGCCCACTCGGAGCAGCGGC
GTGTGTTGATGTCGGCAGGCCTGAGCAAGGACCTGTTCGAAAAGTACAAC
GTGAGTAATTGTTCACCTTCCGGACATGAACAGTTGTTTTCGTGATGAAA
TGTCAAGTATCCGCATGAGTTTCTAGATGAACATGCGTATTATATGTGCC
TCCGATCATCTTTTGAACGATATCCATGCGCCCATTTCGGAAACACTACC
GAATAGTGGGCGCACTGCTCAAGATTTGAGAAATGGAAATCCGTCTTGAA
CGACCCGGTATTTCAGCTTAGGATAAATTGGAAGACCCATGTACCTCGAG
AATGAGCGACATGAATAGGTATGCAGAGATTGTCGACATGAGATTTCCAT
TTGTGGGTTTATGAAATGATTTGATGCGGAACTGACCTTGAGCATTAAGG
ATTACGATCTCTGGCATCCCACTTTCGTTCAGGTATTCACAGTGTAGTAG
AAATGGGATGGACGTTGGAACGGCATACGCTAGCCGTATGAACTTGTTTC
TGTTTTAAAAAATGATTGTCCTTCAATTGTGTTTTTTCATAGGTACGGTC
GCTGCCCGTACGAAAGGGTGATGAGGTGATGGTTGTCCGTGGCGCGTTCA
AGAACCGAGAGGGGAAGATCGAGACGTGCTACCGTCGCAAGTTCGTAATT
CACGTTGAGCGCATCACCCGGGAAAAGGCCAACGGTGAGACAAAATCGAA
TATGGAGTTGTATCCTGGCTTCCAAGTACGACGTTGATGTCACGAAAAAA
ATGTGAATTTGCTGTTGCGTTACGAAGATTGTGCCCACGACGGTACAAAG
ATGGATCTGAAAAGGAGACATGGGGTATTCAAGGACTATTTTTATAGGTC
AAGATGTAAACTAATCAAATCAAGGTCTGGCAAGCTCGAGGATATGCCCA
AGTCGTGCCAGTCCATAACGAAATTTCCCGTGTTGTGTCGAAATCAGGCA
ACACTGTGCACGTGGGCATCCACCCTTCCAAGGTGGTGATTACCAAACTC
AAGATGGACAAGTGCCGTAAGCAGCTGCTTGAGCGGAAGGATCGGACTCG
CAGTGGAGGCAAGCCTGCCGGTTCGGCTGCAGCTGCTGACGTAAACGTCA
ACATGGCTGGCGTGGACTAGGTCTTAATCCATAGCATCAGGCTTGATCAA
CTAGAACGAGCGATATTCTCGGAGCTTTGGACTCCTCTCGGGAATCGCGT
GGTCTAGTGTGGTTCGGTCGGTCAACGTGGAAATTGGACATCCAAGTGCC
ACGAAGGCGGTTGGTGTTTGTTCTTGTTGGGGTCCCCCATCCATGTGCAT
ATGGCCATTTGGTTTGGCACCATCTCCTTCCCCCTTTTCGAGATGTGGTC
TTGAGCAGGAAGAAATAAAAAAATAAAAACCAACATGAGTTCAAGTGTCT
ACACCCCTGTTCTAAATCGTTTGTAACAAGTGGCGTGGTCAGCTCGAACA
GCTCAGTTAGGTCGGGGCTTGAGACTTCATGGGTTGGTGCGAATGAACGC
CCTGACCCTTGCGGTTCCGCCGGTACTCTCGTTGGATAAGTCGGCCTCTC
CGATGAAAAGTTCTTGTCTTTTCAGGAATTGTATCCGCGCCATGAACGAT
TATTCAATTCAAGCCCTCAAAACGGATAAAATTGTCCTATTTCAGCTCCA
ACTTGATCATATTGAACCGGGGGCATTGGAAGTACTTTGTTCGTTGTATG
GATCGGAGCTTTCATTGAAGCGAAAATGTGAAAAGAGCCGTTTTGAACTT
GTAGGGGTCCGTCAAAAATAAATCTCGTGTTACGCGCCCATTTCAGGCAG
GAGATAGAGGGGAACACAAAGAAACAATTTGCATTCATCGTACATGCTCT
TGAGATGAACTCTGCTAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3944:749..3267-

>mRNA_H-paniculata_contig3944.10250.1 ID=mRNA_H-paniculata_contig3944.10250.1|Name=mRNA_H-paniculata_contig3944.10250.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at H-paniculata_contig3944:749..3267- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACATTTTCGTCTTTTATTTCTTTTGGGTGTCCTCAGTGAAGCTTAA
CCCGAGCAAGCCCTCATCCCGGCGCAAGAGCCGGAAGGCCCACTTTGGTG
CCCACTCGGAGCAGCGGCGTGTGTTGATGTCGGCAGGCCTGAGCAAGGAC
CTGTTCGAAAAGTACAACATGGACATTTTCGTCTTTTATTTCTTTTGGGT
GTCCTCAGTGAAGCTTAACCCGAGCAAGCCCTCATCCCGGCGCAAGAGCC
GGAAGGCCCACTTTGGTGCCCACTCGGAGCAGCGGCGTGTGTTGATGTCG
GCAGGCCTGAGCAAGGACCTGTTCGAAAAGTACAACGTACGGTCGCTGCC
CGTACGAAAGGGTGATGAGGTGATGGTTGTCCGTGGCGCGTTCAAGAACC
GAGAGGGGAAGATCGAGACGTGCTACCGTCGCAAGTTCGTAATTCACGTT
GAGCGCATCACCCGGGAAAAGGCCAACGGTACGGTCGCTGCCCGTACGAA
AGGGTGATGAGGTGATGGTTGTCCGTGGCGCGTTCAAGAACCGAGAGGGG
AAGATCGAGACGTGCTACCGTCGCAAGTTCGTAATTCACGTTGAGCGCAT
CACCCGGGAAAAGGCCAACGGCAACACTGTGCACGTGGGCATCCACCCTT
CCAAGGTGGTGATTACCAAACTCAAGATGGACAAGTGCCGTAAGCAGCTG
CTTGAGCGGAAGGATCGGACTCGCAGTGGAGGCAAGCCTGCCGGTTCGGC
TGCAGCTGCTGACGTAAACGTCAACATGGCTGGCGTGGACTAGGCAACAC
TGTGCACGTGGGCATCCACCCTTCCAAGGTGGTGATTACCAAACTCAAGA
TGGACAAGTGCCGTAAGCAGCTGCTTGAGCGGAAGGATCGGACTCGCAGT
GGAGGCAAGCCTGCCGGTTCGGCTGCAGCTGCTGACGTAAACGTCAACAT
GGCTGGCGTGGACTAG
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