prot_H-paniculata_contig3944.10250.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig3944.10250.1
Unique Name	prot_H-paniculata_contig3944.10250.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	161

Homology

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BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Match: D7G8N0_ECTSI (50S ribosomal protein L24, chloroplastic n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8N0_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 3.310e-78
Identity = 125/147 (85.03%), Postives = 134/147 (91.16%), Query Frame = 0

Query:   14 VKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKDLFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITREKANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAADVNVNMAGVD 160
            +KLNP+  SSRRKSRKAHFGAHSE RRVLMSAGLSKDLFEKYNVRSLPVR GDEVMVVRGA+KNREGK+ETCYRRKFVIH+ERITREKANGNTVHVGIHPSKV ITK+KMDK R  LL RKDR+R+GGKPA  A AAD +VNMAGVD
Sbjct:   27 MKLNPNVASSRRKSRKAHFGAHSEARRVLMSAGLSKDLFEKYNVRSLPVRAGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRVALLARKDRSRNGGKPA--AGAADADVNMAGVD 171

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BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Match: A0A835YVZ0_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVZ0_9STRA)

HSP 1 Score: 192 bits (487), Expect = 3.570e-60
Identity = 101/147 (68.71%), Postives = 120/147 (81.63%), Query Frame = 0

Query:   14 VKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKDLFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITREKANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAADVNVNMAGVD 160
            +K+NP+  SSRRKSRKAHF A S QRR++MSA LSK+L  KYNVRS+PVRK DEVMVVRG +KNREGK+  CYRRK+VIH+ER+TREKANG TV +GIHPSKVVITKLK+DK RK+LLERK R    G    +  A++ +VNMAGVD
Sbjct:    1 MKVNPNVSSSRRKSRKAHFTAPSHQRRIIMSASLSKELQAKYNVRSVPVRKDDEVMVVRGHYKNREGKVTACYRRKYVIHIERVTREKANGATVQIGIHPSKVVITKLKLDKDRKELLERKQRKSKAG---AAKKASEKDVNMAGVD 144

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BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Match: A0A1V9ZGA6_9STRA (50S ribosomal protein L24, chloroplastic n=2 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGA6_9STRA)

HSP 1 Score: 181 bits (460), Expect = 7.150e-56
Identity = 100/149 (67.11%), Postives = 115/149 (77.18%), Query Frame = 0

Query:   12 SSVKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKDLFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITREKANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAADVNVNMAGVD 160
            +S K N +  SSRRK RKAHFGAHS QRRVLMSA LSKDL  KYNVRS+P+RK DEV +VRG+FKNREG++  CYR+KFVIHVER+ +EK NG  V VGIHPSKVVITKLK+DK RK++LERK+R   G K  G    ADV   MA VD
Sbjct:   13 ASAKFNSTVTSSRRKCRKAHFGAHSTQRRVLMSANLSKDLQAKYNVRSMPIRKDDEVTIVRGSFKNREGRVTQCYRKKFVIHVERVVKEKVNGAAVPVGIHPSKVVITKLKLDKDRKKILERKNRA-IGDKNKGKFTEADVA--MANVD 158

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BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Match: T0Q9Y6_SAPDV (50S ribosomal protein L24, chloroplastic n=4 Tax=Saprolegniaceae TaxID=4764 RepID=T0Q9Y6_SAPDV)

HSP 1 Score: 180 bits (457), Expect = 1.310e-55
Identity = 99/147 (67.35%), Postives = 114/147 (77.55%), Query Frame = 0

Query:   14 VKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKDLFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITREKANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAADVNVNMAGVD 160
            +K N +  SSRRK RKAHFGAHS QRRVLMSA LSKDL  KYNVRS+P+RK DEV +VRG+FKNREG++  CYR+KFVIHVER+ +EK NG  V VGIHPSKVVITKLK+DK RK++LERK+R   G K  G    ADV   MA VD
Sbjct:    1 MKFNSTVTSSRRKCRKAHFGAHSTQRRVLMSANLSKDLQSKYNVRSMPIRKDDEVTIVRGSFKNREGRVTQCYRKKFVIHVERVVKEKVNGAAVPVGIHPSKVVITKLKLDKDRKKILERKNRA-VGDKNKGKFTEADVA--MANVD 144

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BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Match: A0A3R5U3L5_9STRA (50S ribosomal protein L24, chloroplastic n=4 Tax=Eustigmatophyceae TaxID=5747 RepID=A0A3R5U3L5_9STRA)

HSP 1 Score: 179 bits (453), Expect = 5.650e-55
Identity = 96/147 (65.31%), Postives = 115/147 (78.23%), Query Frame = 0

Query:   14 VKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKDLFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITREKANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAADVNVNMAGVD 160
            VK NP+  SSRRKSRK HF A S  RR++MSA LSKDL  KY VRS+P+RK DEV VVRG+FKNR+GK+   YR+KFVIH++R+TREKANG TV+VGIHPSKV+ITKLK++K RK +LERK RT +  K  G    ADVN  +AGVD
Sbjct:    2 VKFNPNVSSSRRKSRKQHFTAPSHVRRIIMSAPLSKDLRAKYKVRSIPIRKEDEVTVVRGSFKNRDGKVTQVYRKKFVIHIDRVTREKANGATVNVGIHPSKVIITKLKLNKSRKAILERKARTSAADKNKGKLTEADVN--LAGVD 146

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BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Match: A0A451FLG4_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Eustigmatophyceae sp. Mont 10/10-1w TaxID=2506145 RepID=A0A451FLG4_9STRA)

HSP 1 Score: 176 bits (445), Expect = 9.000e-54
Identity = 98/147 (66.67%), Postives = 111/147 (75.51%), Query Frame = 0

Query:   14 VKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKDLFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITREKANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAADVNVNMAGVD 160
            +K NP+  SSRRKSRKAHF A S  RRVLMSA LSKDL  KY VRS+P+RK DEV VVRG  KN +GK+   YR+KFVIH++RITREKANG TV+VGIHPSKVVITKLKM+K RK +LERK R     K  G    ADVN  +AGVD
Sbjct:    1 MKFNPNVSSSRRKSRKAHFSAPSHMRRVLMSAPLSKDLQAKYKVRSMPIRKEDEVTVVRGRHKNSDGKVTQVYRKKFVIHIDRITREKANGATVNVGIHPSKVVITKLKMNKSRKAILERKARKSDADKAKGKFTEADVN--LAGVD 145

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BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Match: A0A7J6P5Z0_PEROL (60S ribosomal protein L26 n=7 Tax=Alveolata TaxID=33630 RepID=A0A7J6P5Z0_PEROL)

HSP 1 Score: 175 bits (443), Expect = 1.700e-53
Identity = 92/147 (62.59%), Postives = 117/147 (79.59%), Query Frame = 0

Query:   14 VKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKDLFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITREKANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAADVNVNMAGVD 160
            +K +P+  SSRRKSRKAHF A S+QRR++MSA LSK+L  KYNVRS+P+RK DEVMVVRG + +REGK+  CYR+KFVIH+ER+TR+K NG+  +VG+HPSKVVITKLKMDK RK LLERK+R++  GK +      + +V MA VD
Sbjct:    1 MKFSPAVSSSRRKSRKAHFTAPSDQRRIIMSAPLSKELRAKYNVRSVPIRKDDEVMVVRGHYSDREGKVTACYRKKFVIHIERLTRDKVNGSHANVGVHPSKVVITKLKMDKDRKALLERKNRSKDSGKKS----YTEKDVAMAQVD 143

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BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Match: A0A6G0XDX3_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XDX3_9STRA)

HSP 1 Score: 182 bits (462), Expect = 2.630e-53
Identity = 100/154 (64.94%), Postives = 119/154 (77.27%), Query Frame = 0

Query:    7 YFFWVSSVKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKDLFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITREKANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAADVNVNMAGVD 160
            +F   S +K N +  SSRRKSRKAHFGAHS QRRVLMSA LSKDL +KYNVRS+P+RK DEV +VRG +KNREG++   YR+KFVIHVER+ +EKANG  V++GIHPSKVVITKLK+DK RK++LERK+R   G K  G    ADV   MA VD
Sbjct:  240 HFTLSSKMKFNSTVSSSRRKSRKAHFGAHSTQRRVLMSANLSKDLQQKYNVRSIPIRKDDEVTIVRGTYKNREGRVTQVYRKKFVIHVERVVKEKANGAAVNIGIHPSKVVITKLKLDKDRKKILERKNRA-VGDKNKGKFTEADVA--MANVD 390

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BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Match: A0A7S2V566_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V566_9STRA)

HSP 1 Score: 173 bits (439), Expect = 7.350e-53
Identity = 91/141 (64.54%), Postives = 106/141 (75.18%), Query Frame = 0

Query:   14 VKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKDLFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITREKANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAADVNV 154
            +K+  +  SSRRKSRKAHF AHS  RRV+MSA LSKDL  KYNVRS+P+RK DEV V RG FKNREGK+  CYR+K+V+HVER T+EK NG  VHVGI PS VVITKLK+DK RK +LERKDR +   K  G     DVN+
Sbjct:    1 MKVKNTVSSSRRKSRKAHFSAHSTARRVIMSAPLSKDLQAKYNVRSMPIRKDDEVQVTRGYFKNREGKVVQCYRKKYVVHVERCTKEKTNGAQVHVGIAPSNVVITKLKLDKNRKAILERKDRAKGAEKGKGKYTETDVNM 141

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BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Match: UPI0009010D6A (60S ribosomal protein L26-1-like n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI0009010D6A)

HSP 1 Score: 173 bits (439), Expect = 8.350e-53
Identity = 93/139 (66.91%), Postives = 108/139 (77.70%), Query Frame = 0

Query:   14 VKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKDLFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITREKANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAADV 152
            +K NP   SSRRKSRKAHF A S  RRVLMSA LS DL  KYNVRS+PVRK DEVMVVRG +K R+GK+   YR+K+VIH+ERITREK NG+TV+VGIHPSKVV+TKLK+DK RK LL+RK + R+ GK  G     DV
Sbjct:    1 MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSSDLRNKYNVRSIPVRKDDEVMVVRGTYKGRDGKVVQVYRKKWVIHIERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKALLDRKAKGRAAGKDKGKFTVEDV 139

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig3944.10250.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G8N0_ECTSI	3.310e-78	85.03	50S ribosomal protein L24, chloroplastic n=2 Tax=E...	[more]
A0A835YVZ0_9STRA	3.570e-60	68.71	50S ribosomal protein L24, chloroplastic n=1 Tax=T...	[more]
A0A1V9ZGA6_9STRA	7.150e-56	67.11	50S ribosomal protein L24, chloroplastic n=2 Tax=A...	[more]
T0Q9Y6_SAPDV	1.310e-55	67.35	50S ribosomal protein L24, chloroplastic n=4 Tax=S...	[more]
A0A3R5U3L5_9STRA	5.650e-55	65.31	50S ribosomal protein L24, chloroplastic n=4 Tax=E...	[more]
A0A451FLG4_9STRA	9.000e-54	66.67	50S ribosomal protein L24, chloroplastic n=1 Tax=E...	[more]
A0A7J6P5Z0_PEROL	1.700e-53	62.59	60S ribosomal protein L26 n=7 Tax=Alveolata TaxID=...	[more]
A0A6G0XDX3_9STRA	2.630e-53	64.94	50S ribosomal protein L24, chloroplastic n=1 Tax=A...	[more]
A0A7S2V566_9STRA	7.350e-53	64.54	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
UPI0009010D6A	8.350e-53	66.91	60S ribosomal protein L26-1-like n=1 Tax=Ipomoea n...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005824	KOW	SMART	SM00739	kow_9	coord: 61..88 e-value: 5.9E-6 score: 35.8
IPR005824	KOW	PFAM	PF00467	KOW	coord: 64..95 e-value: 1.4E-6 score: 28.0
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	TIGRFAM	TIGR01080	TIGR01080	coord: 22..134 e-value: 1.7E-44 score: 148.9
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	PFAM	PF16906	Ribosomal_L26	coord: 22..134 e-value: 4.4E-37 score: 126.8
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	PANTHER	PTHR11143	60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER	coord: 15..140
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 14..154 e-value: 2.1E-49 score: 169.1
IPR005825	Ribosomal protein L24/L26, conserved site	PROSITE	PS01108	RIBOSOMAL_L24	coord: 65..82
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..16
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 17..160
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 12..16
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..11
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 22..137

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig3944	contig	H-paniculata_contig3944:1498..2735 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig3944.10250.1	mRNA_H-paniculata_contig3944.10250.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig3944 749..3267 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig3944.10250.1 ID=prot_H-paniculata_contig3944.10250.1|Name=mRNA_H-paniculata_contig3944.10250.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp
MDIFVFYFFWVSSVKLNPSKPSSRRKSRKAHFGAHSEQRRVLMSAGLSKD
LFEKYNVRSLPVRKGDEVMVVRGAFKNREGKIETCYRRKFVIHVERITRE
KANGNTVHVGIHPSKVVITKLKMDKCRKQLLERKDRTRSGGKPAGSAAAA
DVNVNMAGVD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005824	KOW
IPR005756	Ribosomal_L26/L24P_euk/arc
IPR014722	Rib_L2_dom2
IPR005825	Ribosomal_L24/26_CS
IPR008991	Translation_prot_SH3-like_sf