mRNA_H-paniculata_contig3942.10247.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3942.10247.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE) HSP 1 Score: 438 bits (1126), Expect = 1.010e-130 Identity = 344/767 (44.85%), Postives = 394/767 (51.37%), Query Frame = 1
Query: 1 RWRGSPFPYLAILLYVDAPVTLDVLSVAMDSPDAHSHRQQEQAEKLKGSRSTEAVAATTASSFLPLPADAPG-FTRDLSTGSSGSSRALGGGVWGRRLGRGRA-RALGWAAGTPGVMQRELRGGGQGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGVICPSRRTIVEAVTRVLAPHLSDHVDRHPPEIERDEGDANNIVPASSSPVDGNTIDDSNKTGLSAAAVVHDAQGVAGQQESRQASSXXXXXXXXXXXEVTRKRSAGTAEG--------PPLEEPSSCLRDRDGQEWWGAAKTSLVDFVAKYMELSLVQVGPRLTNAVLVSVAEGGGGVAAGAGSSQG-AVAGVVGLVTLLQRVPLSLVDRHTLLPLAEKNGFFRAAVILLKAAVSLGEQRGFYVEQFARVVRCYLKDSEHGFRMQVFGFIRQEVGRTAAAASASA----STETPSLHAVDGIPGGDGKGESAGXXXXXXXXXXDTPVSAAVATELSEKRETVLAELPRLMELNKAEAVFTVGEAFRGDHKAALDALKSTTTLQFEYLDALLRPGQSPLSAGGASSRGSDGRGXXXXXXXXXXXVGWGGASTS--------QADM-----PQQRSFSSLAAGLDEGDRLLHMRLLVRFRPHEVYPFLSTSTGHSLDDTLALCQERGVADATAYLLERKGDVVGALSLALRTL-----------------------------------------------STRLSSLRSALQEASLRDVAVEMA 2076
RW+ +PFP+LA+LLYVDA T+DVLSVAMDSPDA R+ A P R+ S+ SS R RGRA RA+GWA G P + GG + +CPSRR++VEAVT VLAPHLSD ++ L AA+ XXXXXXXXXXX G + SS LRDRDGQEWW AA+ L FVAKY+ELSLV VGPRLTNAVLVSVA G AV LVTLL+RVPLSLVDR LLPLAEK+GFFRAAVILLKAAV+LGEQRGF +EQFAR+VRCYL+DSE FR QVFGFIRQE+ A AA+ S+ S + H PG G GE LSEKR+ VL +LP+LMEL+KAEAVFTVGEAF GDHKAAL AL +TTTLQF+YLDALLRP S G +SS G G GWGG + D+ P R S LAAGLD+GDR LH+RLLVRFRP+EVYPFLS+STG+SLDDTLALCQERGVADATAYLLERKGDV GAL+LALRTL S RL+SLR+ALQ+ASLR++A EMA
Sbjct: 1311 RWQEAPFPHLAVLLYVDAGATIDVLSVAMDSPDATFRREVPAAAXXXXXXXXXXXXXXXXXXXXXXXXXVPPTLHREFSSSSSSLGR------------RGRAARAVGWATGAP------VSAGGPETRTKVVEGEEVDGVWGGTAAAVEAEN-------------LCPSRRSVVEAVTSVLAPHLSDQAEQ-----------------------------------LEAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYGDDGLTAEAAAQQSSLLRDRDGQEWWAAARPHLFGFVAKYLELSLVSVGPRLTNAVLVSVATGXXXXXXXXHEGPDPAVDAQARLVTLLERVPLSLVDRDRLLPLAEKSGFFRAAVILLKAAVTLGEQRGFTLEQFARIVRCYLQDSEDAFRSQVFGFIRQEIAHAATAAAPSSGNASSKPRQAKHGDRSPPGTHGGGEEGNKEL------------------LSEKRDVVLEKLPQLMELDKAEAVFTVGEAFGGDHKAALAALSATTTLQFDYLDALLRP-PSEQQQGVSSSPSPPGSGGPDIARGRS---GWGGGQQGVRHHHRDDRVDVGGVRGPGSRPSSGLAAGLDDGDRSLHVRLLVRFRPYEVYPFLSSSTGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTLQNLGRAAGRGGGGXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSARLASLRTALQKASLRELAAEMA 1989
BLAST of mRNA_H-paniculata_contig3942.10247.1 vs. uniprot
Match: D8LRX0_ECTSI (Vps8 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI) HSP 1 Score: 343 bits (880), Expect = 2.480e-98 Identity = 309/688 (44.91%), Postives = 346/688 (50.29%), Query Frame = 1
Query: 1 RWRGSPFPYLAILLYVDAPVTLDVLSVAMDSPDAHSHRQQEQAEKLKGSRSTEAVAATTASSFLPLPADAPGFTRDLSTGSSGS----SRALGGGVWGRRLGRGRARALGWAAGTPGVMQRELRGGGQGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGV------ICPSRRTIVEAVTRVLAPHLSDHVDRHPPEIERDEGDANNIVPASSSPVDGNTIDDSNKTGLSAAAVVHDAQGVAGQQESRQASSXXXXXXXXXXXEVTRKRSAGTAEGPPLEEPSSCLRDRDGQEWWGAAKTSLVDFVAKYMELSLVQVGPRLTNAVLVSVAEGGGGVAAGAGSSQG-AVAGVVGLVTLLQRVPLSLVDRHTLLPLAEKNGFFRAAVILLKAAVSLGEQRGFYVEQFARVVRCYLKDSEHGFRMQVFGFIRQEVGRTA-AAASASASTETPSLHAV--DGIP----GGDGKGESAGXXXXXXXXXXDTPVSAAVATELSEKRETVLAELPRLMELNKAEAVFTVGEAFRGDHKAALDALKSTTTLQFEYLDALLRPGQSPLSAGGASSRGSDGRGXXXXXXXXXXX---------------VGWGGASTSQADMPQQRSFSSLAAGLDEGDRLLHMRLLVRFRPHEVYPFLSTSTGHSLDDTLALCQERGVADATAYLLERKG 1965
RW+ + FPYLA+LLYVDA T+DVLSVAMDSPDA HR+ A A P R+LS+ R GGG G + GGG XXXXXX G +CPSRR++VEAVT VLAPHLSD ++ + A+SS XXXXXXXXXXX LRDRDGQEWW AA+ L FVAKY+ELSLV VGPRLTNAVLVSVA G AV LVTLL+RVPLSLVDR LLPLAEK+GFFRAAVILLKAAV+LGEQRGF +EQFAR+VRCYL+DSE FR QVFGFIRQE+ R A AAA +S +T + A DG P GG G+GE A LSEKR+ VL +LP+LMEL+KAEAVFTVGEAF GDHKAAL AL +TTTLQF+YLDALLRP XXXXXXXXXXX VG GG P R S LAAGLD+GDR LH+RLLVR+ P DDTLALCQERGVA AT YLLERKG
Sbjct: 1099 RWQEALFPYLAVLLYVDAGATIDVLSVAMDSPDATFHREVPAAAXXXXXXXXXXXXXXXXXXXXXXXAVPPTLHRELSSXXXXXXXXXDRERGGGPAGGEAXXXXXXXXXGEXXXXXXXRGGRWGGGANXXXXXXXAALDIVLAGGTEARTKVVEGEEVDGVWGGTAAAVEAENLCPSRRSVVEAVTSVLAPHLSDQAEQ---------------LEAASSXXXXXXXXX----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLRDRDGQEWWAAARPHLFGFVAKYLELSLVSVGPRLTNAVLVSVATGXXXXXXXXHEGPDPAVDAQARLVTLLERVPLSLVDRERLLPLAEKSGFFRAAVILLKAAVTLGEQRGFNLEQFARIVRCYLQDSEDAFRSQVFGFIRQEIARAATAAAPSSGNTSSKPRQAKHGDGSPPGTHGGGGEGE---------------------AELLSEKRDVVLEKLPQLMELDKAEAVFTVGEAFGGDHKAALAALSATTTLQFDYLDALLRPPTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDDRVGVGGVRG-----PGSRPSSGLAAGLDDGDRSLHVRLLVRYSP---------------DDTLALCQERGVAHATPYLLERKG 1720
BLAST of mRNA_H-paniculata_contig3942.10247.1 vs. uniprot
Match: B8CD47_THAPS (Vps8 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CD47_THAPS) HSP 1 Score: 89.7 bits (221), Expect = 8.370e-15 Identity = 66/201 (32.84%), Postives = 94/201 (46.77%), Query Frame = 1
Query: 1465 RETVLAELPRLMELNKAEAVFTVGEAFRGDHKAALDALKSTTTLQFEYLDALLRPGQSPLSAGGASSRGSDGRGXXXXXXXXXXXVGWGGASTSQADMPQQRSFSSLAAGLDEGDRLLHMRLLVRFRPHEVYPFLSTSTGHSLDDTLALCQERGVADATAYLLERKGDVVGALSLALRTLSTRLSSLRSALQEA-SLRDVA 2064
R +L LP L+EL+ + VGE F D L +L+ + + EY G+ A S + L A L + ++ L+ RF P VY +LST+ + LDD L LCQ+R + DA+AYLLER GDV GAL L L+TL +R+ +L+S LQE+ S ++VA
Sbjct: 439 RNVLLRRLPELIELDAVQTAHLVGEIFVEDIDMILSSLRDIDSGRVEY--------------------------------------GFLHAIISDLSKVDAVAAQELGANLTINHQHAYLSLMARFEPDMVYQYLSTNHNYRLDDALKLCQDRRITDASAYLLERMGDVSGALQLMLQTLDSRMITLKSILQESKSAKEVA 601
BLAST of mRNA_H-paniculata_contig3942.10247.1 vs. uniprot
Match: A0A1Y1HPF7_KLENI (RING-type domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HPF7_KLENI) HSP 1 Score: 85.5 bits (210), Expect = 2.740e-13 Identity = 67/193 (34.72%), Postives = 93/193 (48.19%), Query Frame = 1
Query: 1465 RETVLAELPRLMELNKAEAVFTVGEAFRGDHKAALDALKSTTTLQFEYLDALLRPGQSPLSAGGASSRGSDGRGXXXXXXXXXXXVGWGGASTSQADMPQQRSFSSLAAGLDEGDRL--LHMRLLVRFRPHEVYPFLSTSTGHSLDDTLALCQERGVADATAYLLERKGDVVGALSLALRTLSTRLSSLRSAL 2037
R VLA LP L+ L+ A V + D+ L AL S LQF YL ++ Q+ A G GG TS+ QR AG++ D + L++ L+ RF P V PFL + + L+ LALCQ GV DA+AYLLER GDV AL+L L ++ ++S+L +A+
Sbjct: 1547 RSAVLARLPALVRLDANAAACIVADHLASDNDRVLKALGSFPDLQFAYLKGIVTA-QAVTVAPGV-----------------------GGPGTSKLGDLLQR------AGIEVTDEMAELYVGLMCRFEPGSVLPFLESHQAYRLEQCLALCQRFGVTDASAYLLERMGDVGAALNLVLSQVTAKMSALDAAV 1709
BLAST of mRNA_H-paniculata_contig3942.10247.1 vs. uniprot
Match: A0A2D4BIS2_PYTIN (Vacuolar protein sorting-associated protein 8 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BIS2_PYTIN) HSP 1 Score: 83.6 bits (205), Expect = 1.090e-12 Identity = 94/339 (27.73%), Postives = 135/339 (39.82%), Query Frame = 1
Query: 1048 LVTLLQRVPLSLVDRHTLLPLAEKNGFFRAAVILLKAAVSLGEQRGFYVEQFARVVRCYLKDSEHGFRMQVFGFIRQEVGRTAAAASASASTETPSLHAVDGIPGGDGKGESAGXXXXXXXXXXDTPVSAAVATELSEKRETVLAELPRLMELNKAEAVFTVGEAFRGDHKAALDALKSTTT------LQFEYLDALLRP-GQSPLSAGGASSRGSDGRGXXXXXXXXXXXVGWGGASTSQADMPQQR-SFSSLAAGLDEGDRLLHMRLLVRFRPHEVYPFLSTSTGHSLDDTLALCQERGVADATAYLLERKGDVVGALSLALRTLSTRLSSLRSALQ 2040
LV LLQ++ D LL + G RAAVIL K +RG A+ V YL D + FRM F +IR E + E + A DG +A ++ E + +L P LME + V V + F + + S + L+F YL +L G S SS+ + G + DM ++ S L D + +RLL F P V+P+L + + +D L LC++ G+ DA AYLLER GDV GAL+L L +L +L L+ AL+
Sbjct: 935 LVRLLQKLHKDSYDHAALLRSVTQEGMHRAAVILHK-------ERG----DVAQAVAAYLADGDQEFRMNAFTYIRTETDKV--------MDEDAAADAADG---------------------------SAARRKIVE--DALLTHAPALMETDDYAFVVLVLDKFPSLNNKVIQKFLSMGSKGGGAKLEFLYLKQILTAAGSSXXXXXXXSSQNA---------APLTRRGSTAGDVGDEGDMVKELLDRSKLRLADDPAVQERFVRLLCEFEPDGVFPYLESHDSYKVDACLKLCKDFGITDAEAYLLERTGDVTGALTLILHSLEQKLKILKPALR 1216
BLAST of mRNA_H-paniculata_contig3942.10247.1 vs. uniprot
Match: A0A7S2PNM9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PNM9_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 1.230e-12 Identity = 60/195 (30.77%), Postives = 89/195 (45.64%), Query Frame = 1
Query: 1465 RETVLAELPRLMELNKAEAVFTVGEAFRGDHKAALDALKSTTT--LQFEYLDALLRPGQSPLSAGGASSRGSDGRGXXXXXXXXXXXVGWGGASTSQADMPQQRSFSSLAAGLDEGDRLLHMRLLVRFRPHEVYPFLSTSTGHSLDDTLALCQERGVADATAYLLERKGDVVGALSLALRTLSTRLSSLRSALQE 2043
R VL LP L++L+ A VGE F G + +L+ + + + +LDA++ + + + + L A L ++ L+ F+P VY +LST+ + L D L LCQ+R +ADA+AYLLER GDV GAL L L+TL TRL +LR+ E
Sbjct: 832 RGIVLRRLPELIKLDADHAAQLVGEMFVGKLNMIISSLEKMDSGRVAYSFLDAVI---------------------------------------SGKLNKMDTVASQELLANLTSNHHHKYLTLMANFQPDRVYQYLSTNQSYRLKDALELCQKRKIADASAYLLERMGDVSGALQLMLQTLDTRLVTLRNIFLE 987
BLAST of mRNA_H-paniculata_contig3942.10247.1 vs. uniprot
Match: A0A1E1XA93_9ACAR (Putative vacuolar assembly/sorting protein vps8 (Fragment) n=1 Tax=Amblyomma aureolatum TaxID=187763 RepID=A0A1E1XA93_9ACAR) HSP 1 Score: 75.9 bits (185), Expect = 2.260e-10 Identity = 46/111 (41.44%), Postives = 65/111 (58.56%), Query Frame = 1
Query: 1768 RSFSSLAAGLDEGDRLL------HMRLLVRFRPHEVYPFLSTSTGHSLDDTLALCQERGVADATAYLLERKGDVVGALSLALRTLSTRLSSLRSALQEASLRDVAVEMAFS 2082
R SSLAA D L ++ L+ +F P+ V FLSTS G+ +++TLA+C+ V DATAYLLE+ GDV GAL++ L+ LS RL + A R+ ++ A S
Sbjct: 964 REASSLAATQGAADSLAVAVQERYIELMCQFEPNAVCTFLSTSEGYRIEETLAICRRHSVLDATAYLLEKAGDVQGALAIMLQCLSQRLQLCAQQAEGAKQREQLLQAALS 1074
BLAST of mRNA_H-paniculata_contig3942.10247.1 vs. uniprot
Match: A0A397EVL7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EVL7_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 9.160e-10 Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 1819 HMRLLVRFRPHEVYPFLSTSTGHSLDDTLALCQERGVADATAYLLERKGDVVGALSLALRTLSTRLSSLRSALQ 2040
++RLL F P +V+P+L+ + +D L LC+E + DA AYLLER GDV GALSL L +L ++ LR AL+
Sbjct: 152 YIRLLCEFNPLQVFPYLAAHQAYRVDSCLKLCKEYNITDAEAYLLERTGDVTGALSLILTSLEKKIGLLRPALR 225
BLAST of mRNA_H-paniculata_contig3942.10247.1 vs. uniprot
Match: A0A2P4Y1Y2_9STRA (Vacuolar protein sorting-associated protein 8 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y1Y2_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.170e-9 Identity = 81/297 (27.27%), Postives = 117/297 (39.39%), Query Frame = 1
Query: 1153 KAAVSLGEQRGFYVEQFARVVRCYLKDSEHGFRMQVFGFIRQEVGRTAAAASASASTETPSLHAVDGIPGGDGKGESAGXXXXXXXXXXDTPVSAAVATELSEKRETVLAELPRLMELNKAEAVFTVGEAFRGDHKAALDALKSTTTLQFEYLDALLRPGQSPLSAGGASSRGSDGRGXXXXXXXXXXXVGWGGASTSQADMPQQR-SFSSLAAGLDEGDRLLHMRLLVRFRPHEVYPFLSTSTGHSLDDTLALCQERGVADATAYLLERKGDVVGALSLALRTLSTRLSSLRSALQ 2040
+AAV L + +G F + + YL D +H ++M F +IR E + + E + DG GE T A + T+ +L + P L NK F L K L+F YL +L S S GGAS +AD+ + S L D + +RLL F P V+P+L + + +D L LC+E + DA AYLLER GDV GAL+L L++L +L L+ AL+
Sbjct: 70 RAAVLLYKDKG----DFTQAIASYLADEDHEYQMNAFSYIRVETDK-------AVEGEEMEMRDSDG-------GEPTRRRRKCIEEAVLTHAPALMKTDGYAFVTLILGQFPNLN--NKVIQKF-------------LSMGKGGAELEFLYLKQVLMA-TSTTSGGGASD---------------------------EADVVKDLLDRSKLRIADDPAVQERFVRLLCEFEPAGVFPYLESHDSYKVDACLRLCKEFAITDAEAYLLERTGDVTGALTLILQSLEQKLKILKPALR 305
BLAST of mRNA_H-paniculata_contig3942.10247.1 vs. uniprot
Match: A0A3F2RY97_9STRA (Vps8 domain-containing protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=A0A3F2RY97_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.650e-9 Identity = 83/306 (27.12%), Postives = 121/306 (39.54%), Query Frame = 1
Query: 1153 KAAVSLGEQRGFYVEQFARVVRCYLKDSEHGFRMQVFGFIRQEVGRTAAAASASASTETPSLHAVDGIPGGDGKGESAGXXXXXXXXXXDTPVSAAVATELSEKR-----ETVLAELPRLMELNK-AEAVFTVGEAFRGDHKAALDAL---KSTTTLQFEYLDALLRPGQSPLSAGGASSRGSDGRGXXXXXXXXXXXVGWGGASTSQAD-MPQQRSFSSLAAGLDEGDRLLHMRLLVRFRPHEVYPFLSTSTGHSLDDTLALCQERGVADATAYLLERKGDVVGALSLALRTLSTRLSSLRSALQ 2040
+AAV L + G F + + YL D +H ++M F +IR E + A+DG G +S E +R E VLA P LM+ + A +G+ ++K L K L+F YL +L S GG+ + +AD M S L G D + +RLL F P V+P+L + + +D L LC+E + DA AYLLER GDV GAL+L L++L +L L+ AL+
Sbjct: 1154 RAAVLLYKDNG----DFTQAIASYLADEDHDYQMNAFSYIRVETDK-----------------AIDGEDMEQGMRDSG-------------------EVEPGRRRRKVIEEAVLAHAPVLMKTDGYAFVTLILGQFPNLNNKVIQKFLSMGKEGAELEFLYLKQVLMASSSTN----------------------------GGSVSDEADVMKDLLERSKLRIGDDPAVQERFVRLLCEFEPAGVFPYLESHDSYKVDACLRLCKEFVITDAEAYLLERTGDVTGALTLILQSLEQKLKILKPALR 1391 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3942.10247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3942.10247.1 >prot_H-paniculata_contig3942.10247.1 ID=prot_H-paniculata_contig3942.10247.1|Name=mRNA_H-paniculata_contig3942.10247.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=722bp RWRGSPFPYLAILLYVDAPVTLDVLSVAMDSPDAHSHRQQEQAEKLKGSRback to top mRNA from alignment at H-paniculata_contig3942:1739..10058+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3942.10247.1 ID=mRNA_H-paniculata_contig3942.10247.1|Name=mRNA_H-paniculata_contig3942.10247.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8320bp|location=Sequence derived from alignment at H-paniculata_contig3942:1739..10058+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3942:1739..10058+ >mRNA_H-paniculata_contig3942.10247.1 ID=mRNA_H-paniculata_contig3942.10247.1|Name=mRNA_H-paniculata_contig3942.10247.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4332bp|location=Sequence derived from alignment at H-paniculata_contig3942:1739..10058+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |