mRNA_H-paniculata_contig3941.10245.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3941.10245.1 vs. uniprot
Match: D8LFJ4_ECTSI (WD-40 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ4_ECTSI) HSP 1 Score: 259 bits (662), Expect = 5.280e-72 Identity = 245/794 (30.86%), Postives = 325/794 (40.93%), Query Frame = 3
Query: 51 TTQFGIQNLQRELLALVGVAAGLRGSLRLSTCCQMLREALASSTIEDQLFGRLFAIFAGVDDPYDAMTPSPPPATAPIGVDRPSRCSTYTSLSPQLAVPAESPPTNNAVPTATHPSCRCTDAPLYAGEWSPPTPSSAKYSKNRRLQQGC-MQSDEGL-GFVGASPPGDSSGSKSMHASKWSSPRP--------VPGQRECVR--------------SWRMQLKWDLATAREPERQFTFLAQQIGRQDVLMAVVPSNPPILAVTCTTKLSLFSLDGKALPTVAQRGRSSDKYAMAGGGNCSDVTSGHFTDAVDSIAEPHERDIRCIAASPAGDMVATGSLDCTIRVRSVPGCDWVCRLRGHEAAVRCILFHRP--KMLASGDGLGNLAIWSLHPV-RRLQTVQAHRDSIQVLTTTGNRRDRLATGGLDGFVRVWSMADDG-SIHPILACSGFCHPFNLAAIRGALVFTSASCDQSVKRYCPCP--------TSERRRPLIGRIDEDSFVVARDDRSGLEQVYVTDLNYYRYNTGLTTTAQSRSGLSVVNTEHGTGTRVVTGHMFGSNHLGPAGTYLGAVVASPIEPWAASSVGEMKEEDDDT-----GRTCLDSTPRVCCITTIKAGVDDD---TRRVREISTAGNNETVKTSH--------GHHVSCWVDLSPSITVSSASSATRLPHHRNFSRSHL-----------------------EDSGSGALCTCSLVVGATIFLGYDTGGVWAHNPSTGRRIYRLDVGGPIVHLLDAFGYLFAYASSGMVSRWTWRD 2207
T +G+Q L+ E+L+LVGVAAGLR SL LSTCC LR+ LAS ++ QLFGRL+A A VDDP DA SPP DR Y + S T +V HP + P + E P S+ K R G + + EG+ G GA P G+ + +S P V G E R SW+M+L+ DL T R+P +F+F Q+ SLDCTIRVRSVP CDWV RLRGHE+ VRC+ FH+ + L S D LG +A+W + PV +RLQT+Q H DS+QVLT TG + RLA+G LDG V VWS++ +G ++ P+ GFCHP+ L AI L F+S+ + P T+ + G D S DD L ++ +T + + G + RV TG + HL AG +G+V S +E W A S + DD+ GR PR+C I + V+ G G + WV +S + A P H + L ED +GALCTC+ VG T+FLGYDTG +WAH GRR+YRL G + L +A G LFAY++SG+VSRW WRD
Sbjct: 17 TRCYGLQYLEGEMLSLVGVAAGLRSSLTLSTCCVSLRDTLASPALDGQLFGRLYATLAAVDDPLDAFLQSPPRRNP---TDRRGLRQPYEPV-------LRSTTTVRSVRQLHHPDTKPVGPPPHPPEALAEEPESSIARKRARSSPGRGVSAHEGVAGGTGAVPSEGLPGATPLPGGCFSPKLPSGDVAGGVVGGLGEAQRRLGGPAGSAWQQRKSWKMRLRGDLVTCRKPSERFSFAGQR----------------------------------------------------------------------------------------------RSLDCTIRVRSVPTCDWVRRLRGHESGVRCLAFHQTGRQGLVSADSLGMIAVWDVFPVSQRLQTMQGHSDSVQVLTWTGGGK-RLASGALDGSVVVWSVSAEGDALDPVFRYGGFCHPYRLVAIGRCLAFSSSELPTVDALFDGPPSHAASLSDTTAGHQGNNGHRDGGS-----DDPPLLAVSKGAHISVVDVDTSPSPGVAEKPGCA----------RVATG-LGRLQHL-VAGASIGSVALSRMESWTADSDSSSIDSDDEGYVYAGGRGITHRAPRLCRILSAARATSFGQFPAAGVKSRPVGGXXXXXXXXXXXXXXXXXGALEAEWVSVSRYRWLWPARETA--PRHDSMHGGGLGXXXXXXXXXXXXXXXXXXXXSGEDLDAGALCTCATFVGRTLFLGYDTGYIWAHRAFDGRRLYRLSTPGSLARLTEAEGSLFAYSASGVVSRWRWRD 686
BLAST of mRNA_H-paniculata_contig3941.10245.1 vs. uniprot
Match: A0A6H5JGA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA3_9PHAE) HSP 1 Score: 100 bits (249), Expect = 4.300e-19 Identity = 109/357 (30.53%), Postives = 137/357 (38.38%), Query Frame = 3
Query: 207 LFAIFAGVDDPYDAMTPSPPPATAPIGVDRPSRCSTYTSLSPQLAVPAESPPTNNAVPTATHPSCRCTDAPLYAGEWSPPTPSSAKYSKNRRLQQGC-MQSDEGL-GFVGASPPGDSSGSKSMHASKWSSPRPVPGQRECVR--------------SWRMQLKWDLATAREPERQFTFLAQQIGRQDVLMAVVPSNPPILAVTCTTKLSLFSLDGKALPTVA---QRGRSSDKYAMAGGGNCSDVTSGHF-----TDAVD------------------------------------------------------------------------SIAEPHERDIRCIAASPAGDMVATG 989
L+A A VDDP DA SPP A DR Y + P+ T ++V P R P + E P S K R G + + EG+ G GA P D G+ S + V G + R +W+ QL+ DL T R+P +F+F Q+ G+QDVLM VV SNPPI+A+TCTT+LSLFSLDG+ LP V QR + + G C S F AVD AE H+RDIRC+AASPAGDMVATG
Sbjct: 11 LYATLAAVDDPLDAFLQSPPRCNA---TDRRGIRQPYEPVLPRTT-------TVHSVRQLHRPDARPVGPPPHPPEALAAEPGSYFARKRARSSPGRGVSAYEGVAGGTGAGPREDVPGATPKLPSGDVAGGVVSGSGDAQRRLGAPAGSAWQQRKTWKTQLRGDLVTCRKPSERFSFEGQRRGKQDVLMEVVASNPPIVAITCTTELSLFSLDGERLPVVTVQQQRWKQRQRRWRNVEGACQKRDSSGFDASAAVGAVDVAAGAGDGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETESFGANYKWQRERGSSTGESVYERDRDGEEAAEVHQRDIRCLAASPAGDMVATG 357
BLAST of mRNA_H-paniculata_contig3941.10245.1 vs. uniprot
Match: A0A6H5JJA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA6_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 6.030e-19 Identity = 79/225 (35.11%), Postives = 102/225 (45.33%), Query Frame = 3
Query: 1608 RVVTGHMFGSNHLGPAGTYLGAVVASPIEPWAASSVGEMKEEDDDT-----GRTCLDSTPRVCCITTIK----------AGVDDDTRRVREISTAGNNETVKTSHGHHVSCWV--DLSPSITVSSASSATRLPHHRNFSRSHL--------EDSGSGALCTCSLVVGATIFLGYDTGGVWAHNPSTGRRIYRLDVGGPIVHLLDAFGYLFAYASSGMVSRWTWRD 2207
RV TG + HL AG +G+V S +E W A S E DD+ GR PR+C + AGV+ R G E S + W + +P R P + SR ED +GALCTC+ VG T+FLGYDTG +WAH GRR+YRL G + L +A G LFAY++SG+VSRW+W D
Sbjct: 82 RVATG-LSRLQHL-VAGASIGSVALSRMESWTADSDSSSIESDDEGYVHAGGRGVTYRAPRLCRVLGAARVTSFGQFPAAGVES---RPGGGGDGGALEAEWVSVSRYRWRWPARETAPRHDGMHGGGLGRKPFATSSSRKGXXXXXXXSGEDVDAGALCTCATFVGRTLFLGYDTGDIWAHRAFDGRRLYRLSTLGSLARLTEAEGSLFAYSASGVVSRWSWGD 301
BLAST of mRNA_H-paniculata_contig3941.10245.1 vs. uniprot
Match: A0A3P3Y3T3_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y3T3_PLABS) HSP 1 Score: 58.9 bits (141), Expect = 1.040e-5 Identity = 44/149 (29.53%), Postives = 66/149 (44.30%), Query Frame = 3
Query: 969 GDMVATGSLDCTIRVRSVPGCDWVCRLRGHEAAVRCILFHRPK-------MLASGDGLGNLAIWSLHPVRRLQTVQAHRDSIQVLTTTGNRRDRLATGGLDGFVRVWSMADDGSIHPILACSGFCHPFNLAAI---RGALVFTSASCDQ 1385
G+ VA+G C+ + + D LRGH V C+L P+ MLASGDG G + +WSL R + +Q+ VL+ L + G DG+V++W + G P F A+ R ++ SA CD+
Sbjct: 11 GNCVASGV--CSSQCLRMTAEDQAYGLRGHAHPVACLLA-LPRSDATGRTMLASGDGNGEIRLWSLVTRRATRVIQSGHGKHGVLSLASMASSELVSQGRDGYVKLWDLNATGDSTPSSTVDTSSRSFCRMAVLPERSVVIVPSADCDE 156
BLAST of mRNA_H-paniculata_contig3941.10245.1 vs. uniprot
Match: A0A0G4J543_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J543_PLABS) HSP 1 Score: 58.9 bits (141), Expect = 1.800e-5 Identity = 44/149 (29.53%), Postives = 66/149 (44.30%), Query Frame = 3
Query: 969 GDMVATGSLDCTIRVRSVPGCDWVCRLRGHEAAVRCILFHRPK-------MLASGDGLGNLAIWSLHPVRRLQTVQAHRDSIQVLTTTGNRRDRLATGGLDGFVRVWSMADDGSIHPILACSGFCHPFNLAAI---RGALVFTSASCDQ 1385
G+ VA+G C+ + + D LRGH V C+L P+ MLASGDG G + +WSL R + +Q+ VL+ L + G DG+V++W + G P F A+ R ++ SA CD+
Sbjct: 11 GNCVASGV--CSSQCLRMTAEDQAYGLRGHAHPVACLLA-LPRSDATGRTMLASGDGNGEIRLWSLVTRRATRVIQSGHGKHGVLSLASMASSELVSQGRDGYVKLWDLNATGDSTPSSTVDTSSRSFCRMAVLPERSVVIVPSADCDE 156 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3941.10245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3941.10245.1 >prot_H-paniculata_contig3941.10245.1 ID=prot_H-paniculata_contig3941.10245.1|Name=mRNA_H-paniculata_contig3941.10245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=729bp MSTATPSTTQFGIQNLQRELLALVGVAAGLRGSLRLSTCCQMLREALASSback to top mRNA from alignment at H-paniculata_contig3941:541..12349- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3941.10245.1 ID=mRNA_H-paniculata_contig3941.10245.1|Name=mRNA_H-paniculata_contig3941.10245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11809bp|location=Sequence derived from alignment at H-paniculata_contig3941:541..12349- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3941:541..12349- >mRNA_H-paniculata_contig3941.10245.1 ID=mRNA_H-paniculata_contig3941.10245.1|Name=mRNA_H-paniculata_contig3941.10245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4374bp|location=Sequence derived from alignment at H-paniculata_contig3941:541..12349- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |