prot_H-paniculata_contig3941.10245.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3941.10245.1
Unique Nameprot_H-paniculata_contig3941.10245.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length729
Homology
BLAST of mRNA_H-paniculata_contig3941.10245.1 vs. uniprot
Match: D8LFJ4_ECTSI (WD-40 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ4_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 6.890e-72
Identity = 244/791 (30.85%), Postives = 324/791 (40.96%), Query Frame = 0
Query:   11 FGIQNLQRELLALVGVAAGLRGSLRLSTCCQMLREALASSTIEDQLFGRLFAIFAGVDDPYDAMTPSPPPATAPIGVDRPSRCSTYTSLSPQLAVPAESPPTNNAVPTATHPSCRCTDAPLYAGEWSPPTPSSAKYSKNRRLQQGC-MQSDEGL-GFVGASPPGDSSGSKSMHASKWSSPRP--------VPGQRECVR--------------SWRMQLKWDLATAREPERQFTFLAQQIGRQDVLMAVVPSNPPILAVTCTTKLSLFSLDGKALPTVAQRGRSSDKYAMAGGGNCSDVTSGHFTDAVDSIAEPHERDIRCIAASPAGDMVATGSLDCTIRVRSVPGCDWVCRLRGHEAAVRCILFHRP--KMLASGDGLGNLAIWSLHPV-RRLQTVQAHRDSIQVLTTTGNRRDRLATGGLDGFVRVWSMADDG-SIHPILACSGFCHPFNLAAIRGALVFTSASCDQSVKRYCPCP--------TSERRRPLIGRIDEDSFVVARDDRSGLEQVYVTDLNYYRYNTGLTTTAQSRSGLSVVNTEHGTGTRVVTGHMFGSNHLGPAGTYLGAVVASPIEPWAASSVGEMKEEDDDT-----GRTCLDSTPRVCCITTIKAGVDDD---TRRVREISTAGNNETVKTSH--------GHHVSCWVDLSPSITVSSASSATRLPHHRNFSRSHL-----------------------EDSGSGALCTCSLVVGATIFLGYDTGGVWAHNPSTGRRIYRLDVGGPIVHLLDAFGYLFAYASSGMVSRWTWRD 726
            +G+Q L+ E+L+LVGVAAGLR SL LSTCC  LR+ LAS  ++ QLFGRL+A  A VDDP DA   SPP        DR      Y  +         S  T  +V    HP  +    P +  E     P S+   K  R   G  + + EG+ G  GA P     G+  +    +S   P        V G  E  R              SW+M+L+ DL T R+P  +F+F  Q+                                                                                               SLDCTIRVRSVP CDWV RLRGHE+ VRC+ FH+   + L S D LG +A+W + PV +RLQT+Q H DS+QVLT TG  + RLA+G LDG V VWS++ +G ++ P+    GFCHP+ L AI   L F+S+        +   P        T+   +   G  D  S     DD   L       ++    +T  +     + G +          RV TG +    HL  AG  +G+V  S +E W A S     + DD+      GR      PR+C I +              V+     G                 G   + WV +S    +  A      P H +     L                       ED  +GALCTC+  VG T+FLGYDTG +WAH    GRR+YRL   G +  L +A G LFAY++SG+VSRW WRD
Sbjct:   20 YGLQYLEGEMLSLVGVAAGLRSSLTLSTCCVSLRDTLASPALDGQLFGRLYATLAAVDDPLDAFLQSPPRRNP---TDRRGLRQPYEPV-------LRSTTTVRSVRQLHHPDTKPVGPPPHPPEALAEEPESSIARKRARSSPGRGVSAHEGVAGGTGAVPSEGLPGATPLPGGCFSPKLPSGDVAGGVVGGLGEAQRRLGGPAGSAWQQRKSWKMRLRGDLVTCRKPSERFSFAGQR----------------------------------------------------------------------------------------------RSLDCTIRVRSVPTCDWVRRLRGHESGVRCLAFHQTGRQGLVSADSLGMIAVWDVFPVSQRLQTMQGHSDSVQVLTWTGGGK-RLASGALDGSVVVWSVSAEGDALDPVFRYGGFCHPYRLVAIGRCLAFSSSELPTVDALFDGPPSHAASLSDTTAGHQGNNGHRDGGS-----DDPPLLAVSKGAHISVVDVDTSPSPGVAEKPGCA----------RVATG-LGRLQHL-VAGASIGSVALSRMESWTADSDSSSIDSDDEGYVYAGGRGITHRAPRLCRILSAARATSFGQFPAAGVKSRPVGGXXXXXXXXXXXXXXXXXGALEAEWVSVSRYRWLWPARETA--PRHDSMHGGGLGXXXXXXXXXXXXXXXXXXXXSGEDLDAGALCTCATFVGRTLFLGYDTGYIWAHRAFDGRRLYRLSTPGSLARLTEAEGSLFAYSASGVVSRWRWRD 686          
BLAST of mRNA_H-paniculata_contig3941.10245.1 vs. uniprot
Match: A0A6H5JGA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA3_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 3.590e-19
Identity = 109/357 (30.53%), Postives = 137/357 (38.38%), Query Frame = 0
Query:   60 LFAIFAGVDDPYDAMTPSPPPATAPIGVDRPSRCSTYTSLSPQLAVPAESPPTNNAVPTATHPSCRCTDAPLYAGEWSPPTPSSAKYSKNRRLQQGC-MQSDEGL-GFVGASPPGDSSGSKSMHASKWSSPRPVPGQRECVR--------------SWRMQLKWDLATAREPERQFTFLAQQIGRQDVLMAVVPSNPPILAVTCTTKLSLFSLDGKALPTVA---QRGRSSDKYAMAGGGNCSDVTSGHF-----TDAVD------------------------------------------------------------------------SIAEPHERDIRCIAASPAGDMVATG 320
            L+A  A VDDP DA   SPP   A    DR      Y  + P+         T ++V     P  R    P +  E     P S    K  R   G  + + EG+ G  GA P  D  G+     S   +   V G  +  R              +W+ QL+ DL T R+P  +F+F  Q+ G+QDVLM VV SNPPI+A+TCTT+LSLFSLDG+ LP V    QR +   +      G C    S  F       AVD                                                                          AE H+RDIRC+AASPAGDMVATG
Sbjct:   11 LYATLAAVDDPLDAFLQSPPRCNA---TDRRGIRQPYEPVLPRTT-------TVHSVRQLHRPDARPVGPPPHPPEALAAEPGSYFARKRARSSPGRGVSAYEGVAGGTGAGPREDVPGATPKLPSGDVAGGVVSGSGDAQRRLGAPAGSAWQQRKTWKTQLRGDLVTCRKPSERFSFEGQRRGKQDVLMEVVASNPPIVAITCTTELSLFSLDGERLPVVTVQQQRWKQRQRRWRNVEGACQKRDSSGFDASAAVGAVDVAAGAGDGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETESFGANYKWQRERGSSTGESVYERDRDGEEAAEVHQRDIRCLAASPAGDMVATG 357          
BLAST of mRNA_H-paniculata_contig3941.10245.1 vs. uniprot
Match: A0A6H5JJA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA6_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.700e-18
Identity = 79/225 (35.11%), Postives = 102/225 (45.33%), Query Frame = 0
Query:  527 RVVTGHMFGSNHLGPAGTYLGAVVASPIEPWAASSVGEMKEEDDDT-----GRTCLDSTPRVCCITTIK----------AGVDDDTRRVREISTAGNNETVKTSHGHHVSCWV--DLSPSITVSSASSATRLPHHRNFSRSHL--------EDSGSGALCTCSLVVGATIFLGYDTGGVWAHNPSTGRRIYRLDVGGPIVHLLDAFGYLFAYASSGMVSRWTWRD 726
            RV TG +    HL  AG  +G+V  S +E W A S     E DD+      GR      PR+C +              AGV+    R       G  E    S   +   W   + +P           R P   + SR           ED  +GALCTC+  VG T+FLGYDTG +WAH    GRR+YRL   G +  L +A G LFAY++SG+VSRW+W D
Sbjct:   82 RVATG-LSRLQHL-VAGASIGSVALSRMESWTADSDSSSIESDDEGYVHAGGRGVTYRAPRLCRVLGAARVTSFGQFPAAGVES---RPGGGGDGGALEAEWVSVSRYRWRWPARETAPRHDGMHGGGLGRKPFATSSSRKGXXXXXXXSGEDVDAGALCTCATFVGRTLFLGYDTGDIWAHRAFDGRRLYRLSTLGSLARLTEAEGSLFAYSASGVVSRWSWGD 301          
BLAST of mRNA_H-paniculata_contig3941.10245.1 vs. uniprot
Match: A0A3P3Y3T3_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y3T3_PLABS)

HSP 1 Score: 58.9 bits (141), Expect = 8.940e-6
Identity = 44/149 (29.53%), Postives = 66/149 (44.30%), Query Frame = 0
Query:  314 GDMVATGSLDCTIRVRSVPGCDWVCRLRGHEAAVRCILFHRPK-------MLASGDGLGNLAIWSLHPVRRLQTVQAHRDSIQVLTTTGNRRDRLATGGLDGFVRVWSMADDGSIHPILACSGFCHPFNLAAI---RGALVFTSASCDQ 452
            G+ VA+G   C+ +   +   D    LRGH   V C+L   P+       MLASGDG G + +WSL   R  + +Q+      VL+        L + G DG+V++W +   G   P          F   A+   R  ++  SA CD+
Sbjct:   11 GNCVASGV--CSSQCLRMTAEDQAYGLRGHAHPVACLLA-LPRSDATGRTMLASGDGNGEIRLWSLVTRRATRVIQSGHGKHGVLSLASMASSELVSQGRDGYVKLWDLNATGDSTPSSTVDTSSRSFCRMAVLPERSVVIVPSADCDE 156          
BLAST of mRNA_H-paniculata_contig3941.10245.1 vs. uniprot
Match: A0A0G4J543_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J543_PLABS)

HSP 1 Score: 58.9 bits (141), Expect = 1.540e-5
Identity = 44/149 (29.53%), Postives = 66/149 (44.30%), Query Frame = 0
Query:  314 GDMVATGSLDCTIRVRSVPGCDWVCRLRGHEAAVRCILFHRPK-------MLASGDGLGNLAIWSLHPVRRLQTVQAHRDSIQVLTTTGNRRDRLATGGLDGFVRVWSMADDGSIHPILACSGFCHPFNLAAI---RGALVFTSASCDQ 452
            G+ VA+G   C+ +   +   D    LRGH   V C+L   P+       MLASGDG G + +WSL   R  + +Q+      VL+        L + G DG+V++W +   G   P          F   A+   R  ++  SA CD+
Sbjct:   11 GNCVASGV--CSSQCLRMTAEDQAYGLRGHAHPVACLLA-LPRSDATGRTMLASGDGNGEIRLWSLVTRRATRVIQSGHGKHGVLSLASMASSELVSQGRDGYVKLWDLNATGDSTPSSTVDTSSRSFCRMAVLPERSVVIVPSADCDE 156          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3941.10245.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LFJ4_ECTSI6.890e-7230.85WD-40 repeat protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JGA3_9PHAE3.590e-1930.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJA6_9PHAE1.700e-1835.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3P3Y3T3_PLABS8.940e-629.53Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A0G4J543_PLABS1.540e-529.53Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 291..330
e-value: 8.0E-4
score: 28.7
coord: 333..371
e-value: 0.079
score: 22.1
coord: 374..414
e-value: 7.3E-4
score: 28.8
IPR001680WD40 repeatPFAMPF00400WD40coord: 281..328
e-value: 0.0012
score: 19.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 381..423
score: 10.341
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 340..380
score: 8.67
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 280..486
e-value: 6.6E-26
score: 92.9
NoneNo IPR availablePANTHERPTHR44489FAMILY NOT NAMEDcoord: 301..453
coord: 360..723
coord: 300..414
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 298..423
score: 20.646
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 299..724

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3941contigH-paniculata_contig3941:789..12320 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3941.10245.1mRNA_H-paniculata_contig3941.10245.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3941 541..12349 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3941.10245.1 ID=prot_H-paniculata_contig3941.10245.1|Name=mRNA_H-paniculata_contig3941.10245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=729bp
MSTATPSTTQFGIQNLQRELLALVGVAAGLRGSLRLSTCCQMLREALASS
TIEDQLFGRLFAIFAGVDDPYDAMTPSPPPATAPIGVDRPSRCSTYTSLS
PQLAVPAESPPTNNAVPTATHPSCRCTDAPLYAGEWSPPTPSSAKYSKNR
RLQQGCMQSDEGLGFVGASPPGDSSGSKSMHASKWSSPRPVPGQRECVRS
WRMQLKWDLATAREPERQFTFLAQQIGRQDVLMAVVPSNPPILAVTCTTK
LSLFSLDGKALPTVAQRGRSSDKYAMAGGGNCSDVTSGHFTDAVDSIAEP
HERDIRCIAASPAGDMVATGSLDCTIRVRSVPGCDWVCRLRGHEAAVRCI
LFHRPKMLASGDGLGNLAIWSLHPVRRLQTVQAHRDSIQVLTTTGNRRDR
LATGGLDGFVRVWSMADDGSIHPILACSGFCHPFNLAAIRGALVFTSASC
DQSVKRYCPCPTSERRRPLIGRIDEDSFVVARDDRSGLEQVYVTDLNYYR
YNTGLTTTAQSRSGLSVVNTEHGTGTRVVTGHMFGSNHLGPAGTYLGAVV
ASPIEPWAASSVGEMKEEDDDTGRTCLDSTPRVCCITTIKAGVDDDTRRV
REISTAGNNETVKTSHGHHVSCWVDLSPSITVSSASSATRLPHHRNFSRS
HLEDSGSGALCTCSLVVGATIFLGYDTGGVWAHNPSTGRRIYRLDVGGPI
VHLLDAFGYLFAYASSGMVSRWTWRDRS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf