mRNA_H-paniculata_contig39360.10230.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39360.10230.1
Unique NamemRNA_H-paniculata_contig39360.10230.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig39360.10230.1 vs. uniprot
Match: A0A6H5JP50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP50_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.480e-27
Identity = 84/232 (36.21%), Postives = 119/232 (51.29%), Query Frame = 1 
Query: 1213 EAVERGGADGLGGAVLFADLGRRVTAHFDRSDQASAIKRLSSYTVVTGVPFVDYLRGFKSLVSGLSGAGRKNAPTDGMVQSYVRNSIAQQFPTLMTSLYPGDLASRDIPYASVDAMWTAFIHTESNTTPAIRGASSSSVLSQPAAEPPLVHTTSSSVGARNNARPSKNSSTGWTPNSLRSNGS--------VMSVGENPDPFTAAFDAWPAAEETWDQVFVTTTRWETTDPP 1884
            + V+R   DG  G   F  L R ++  FD  D+  +  RL  + V  G  F DYLR F+ LVS ++G+ R  AP+  MV   VRNS+++QFP+L   LYPGDLA+   P+ S+DAMW AF    +N TPAI G+   S+ S P +  P               R S+N +T   P+  R+ GS        V S     DPF+  ++AWPA +  W  V+  ++ +  T  P
Sbjct:  117 QQVKRRLDDGATGPEAFTLLLRLLSEQFDVGDRQESFLRLQEFGVSNGTLFADYLRAFRLLVSSVTGSERVLAPSVSMVLEIVRNSVSKQFPSLAPMLYPGDLATAVTPFDSIDAMWQAFAPLATNKTPAIGGSEYFSLSSTPGSSQP---------------RRSQNRATAPAPSGRRAQGSAHNPVVLAVQSQDGGNDPFSRDYNAWPAKQGDWSDVYQVSSSFRNTGDP 333
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39360.10230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JP50_9PHAE1.480e-2736.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39360contigH-paniculata_contig39360:34..1937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size1904
Cds size1902
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930206.758321-CDS-H-paniculata_contig39360:33..19351622930206.758321-CDS-H-paniculata_contig39360:33..1935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39360 34..1935 +
1691481190.5525606-CDS-H-paniculata_contig39360:33..19351691481190.5525606-CDS-H-paniculata_contig39360:33..1935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39360 34..1935 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39360.10230.1prot_H-paniculata_contig39360.10230.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39360 34..1935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39360.10230.1

>prot_H-paniculata_contig39360.10230.1 ID=prot_H-paniculata_contig39360.10230.1|Name=mRNA_H-paniculata_contig39360.10230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=634bp
LSRAEAAKTAALAASLRFVGQPSNDGHRTISPTPPPLAQTPTVSRPVSAL
LSVPEAETFLPNPRDTPFLDMRLMTLYGEFPTGNPLRCSPVAWANIRGPA
YSMAGLLSVNPLPHLSLQDTKVCHVLSHVPRSDPRTADCPYTAAARALLR
VLRCAVHDAALAARHTLNQDTSRGDNGDHRNGRGSNNDSGGRRNSGRRPT
ITRSGSETNSGLSGDGRGRNRVDITTDGVRRCTQPTPSLEVAAARVLGLS
EDDRTDRPLSSLSAHARATAIEVANPEARKAAEIVQAQTAADALKATSDA
ARVAAIQREYVKIDTKHIWFVDPMPPSSTEDTGLYTANLLKSIQRALANI
LELADVTGKQKFSSPTWVYGWHTPLHKAMRRACKKSTFSPSDPTSLTQTI
DSFFEAVERGGADGLGGAVLFADLGRRVTAHFDRSDQASAIKRLSSYTVV
TGVPFVDYLRGFKSLVSGLSGAGRKNAPTDGMVQSYVRNSIAQQFPTLMT
SLYPGDLASRDIPYASVDAMWTAFIHTESNTTPAIRGASSSSVLSQPAAE
PPLVHTTSSSVGARNNARPSKNSSTGWTPNSLRSNGSVMSVGENPDPFTA
AFDAWPAAEETWDQVFVTTTRWETTDPPLWTPLL
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mRNA from alignment at H-paniculata_contig39360:34..1937+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39360.10230.1 ID=mRNA_H-paniculata_contig39360.10230.1|Name=mRNA_H-paniculata_contig39360.10230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1904bp|location=Sequence derived from alignment at H-paniculata_contig39360:34..1937+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTCCCGTGCCGAGGCGGCCAAAACAGCGGCACTGGCTGCCAGCTTGCG
CTTTGTTGGCCAGCCGTCCAATGATGGACACAGGACCATCTCGCCGACGC
CGCCCCCGCTTGCCCAGACACCCACCGTTTCACGACCTGTGTCAGCTCTC
CTCTCCGTCCCTGAGGCAGAAACTTTCCTGCCGAATCCTCGCGACACGCC
CTTCCTTGACATGCGCCTGATGACTCTATATGGTGAGTTCCCGACGGGGA
ATCCTTTGCGGTGCTCCCCAGTAGCATGGGCCAACATCCGGGGTCCGGCT
TATTCTATGGCCGGATTACTTTCTGTGAACCCTCTCCCGCACTTGTCGCT
TCAGGACACAAAGGTGTGCCACGTCCTCAGCCATGTACCGCGCTCCGATC
CGCGCACGGCGGATTGTCCGTACACCGCGGCCGCGCGTGCTTTACTGCGC
GTCTTACGCTGCGCGGTCCATGATGCGGCGCTTGCTGCTCGGCACACCCT
GAATCAGGACACCTCGCGGGGCGACAACGGAGATCACCGGAATGGGCGTG
GCTCCAACAACGACTCTGGCGGTCGCCGGAACTCGGGACGCCGCCCAACC
ATCACACGATCCGGGAGCGAAACGAATTCGGGATTATCGGGAGACGGGCG
CGGTCGCAACCGCGTCGACATCACTACAGACGGAGTTCGAAGGTGCACAC
AGCCCACTCCTAGTTTAGAAGTTGCAGCTGCTCGTGTTCTCGGCCTTTCC
GAGGATGATCGTACTGATAGACCTCTCTCCTCCTTGTCCGCTCATGCTCG
CGCTACCGCTATAGAAGTAGCAAATCCCGAAGCACGTAAGGCCGCAGAAA
TAGTACAGGCACAAACGGCCGCTGATGCGTTGAAGGCTACGAGCGACGCC
GCACGTGTAGCCGCAATTCAGAGAGAGTACGTAAAAATCGATACAAAACA
TATTTGGTTTGTTGACCCTATGCCCCCGTCTAGTACTGAAGACACGGGCC
TATACACGGCCAATTTATTAAAATCAATTCAGCGTGCTTTAGCGAATATT
TTGGAACTCGCAGACGTCACCGGGAAGCAGAAATTTTCTTCCCCCACTTG
GGTGTATGGTTGGCATACTCCCCTGCACAAAGCCATGCGTAGAGCATGTA
AGAAAAGTACCTTTTCCCCCTCCGATCCTACCTCTCTTACACAGACGATT
GATAGTTTCTTCGAAGCGGTGGAACGAGGTGGCGCCGACGGCCTCGGAGG
CGCCGTTTTATTCGCAGATCTGGGTCGGCGTGTGACGGCACACTTTGACC
GTTCTGACCAGGCTAGCGCTATTAAGCGTTTAAGTTCTTACACAGTAGTT
ACAGGTGTGCCTTTCGTAGACTACTTACGCGGCTTTAAGAGCCTGGTTTC
GGGACTTTCTGGCGCTGGCCGAAAGAACGCTCCCACGGATGGTATGGTAC
AGAGCTATGTGCGTAATAGCATCGCTCAGCAATTTCCTACCTTGATGACA
TCGTTGTACCCGGGTGACTTGGCTTCGCGTGATATACCGTATGCCTCTGT
AGACGCCATGTGGACTGCCTTTATCCACACAGAATCTAACACCACACCCG
CTATTCGTGGCGCATCCTCTTCTTCTGTTCTTTCGCAACCAGCAGCGGAA
CCGCCGCTAGTTCACACTACTTCTAGTAGTGTCGGGGCGCGCAATAATGC
ACGCCCCTCTAAAAACTCTTCGACGGGTTGGACCCCCAATTCCCTGCGTA
GTAACGGTTCTGTGATGTCTGTTGGTGAAAACCCCGATCCCTTCACGGCT
GCGTTCGACGCGTGGCCTGCTGCAGAAGAAACGTGGGATCAGGTTTTTGT
TACAACGACACGTTGGGAAACTACTGACCCTCCTTTATGGACCCCACTAT
TATC
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Coding sequence (CDS) from alignment at H-paniculata_contig39360:34..1937+

>mRNA_H-paniculata_contig39360.10230.1 ID=mRNA_H-paniculata_contig39360.10230.1|Name=mRNA_H-paniculata_contig39360.10230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3804bp|location=Sequence derived from alignment at H-paniculata_contig39360:34..1937+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTCCCGTGCCGAGGCGGCCAAAACAGCGGCACTGGCTGCCAGCTTGCG
CTTTGTTGGCCAGCCGTCCAATGATGGACACAGGACCATCTCGCCGACGC
CGCCCCCGCTTGCCCAGACACCCACCGTTTCACGACCTGTGTCAGCTCTC
CTCTCCGTCCCTGAGGCAGAAACTTTCCTGCCGAATCCTCGCGACACGCC
CTTCCTTGACATGCGCCTGATGACTCTATATGGTGAGTTCCCGACGGGGA
ATCCTTTGCGGTGCTCCCCAGTAGCATGGGCCAACATCCGGGGTCCGGCT
TATTCTATGGCCGGATTACTTTCTGTGAACCCTCTCCCGCACTTGTCGCT
TCAGGACACAAAGGTGTGCCACGTCCTCAGCCATGTACCGCGCTCCGATC
CGCGCACGGCGGATTGTCCGTACACCGCGGCCGCGCGTGCTTTACTGCGC
GTCTTACGCTGCGCGGTCCATGATGCGGCGCTTGCTGCTCGGCACACCCT
GAATCAGGACACCTCGCGGGGCGACAACGGAGATCACCGGAATGGGCGTG
GCTCCAACAACGACTCTGGCGGTCGCCGGAACTCGGGACGCCGCCCAACC
ATCACACGATCCGGGAGCGAAACGAATTCGGGATTATCGGGAGACGGGCG
CGGTCGCAACCGCGTCGACATCACTACAGACGGAGTTCGAAGGTGCACAC
AGCCCACTCCTAGTTTAGAAGTTGCAGCTGCTCGTGTTCTCGGCCTTTCC
GAGGATGATCGTACTGATAGACCTCTCTCCTCCTTGTCCGCTCATGCTCG
CGCTACCGCTATAGAAGTAGCAAATCCCGAAGCACGTAAGGCCGCAGAAA
TAGTACAGGCACAAACGGCCGCTGATGCGTTGAAGGCTACGAGCGACGCC
GCACGTGTAGCCGCAATTCAGAGAGAGTACGTAAAAATCGATACAAAACA
TATTTGGTTTGTTGACCCTATGCCCCCGTCTAGTACTGAAGACACGGGCC
TATACACGGCCAATTTATTAAAATCAATTCAGCGTGCTTTAGCGAATATT
TTGGAACTCGCAGACGTCACCGGGAAGCAGAAATTTTCTTCCCCCACTTG
GGTGTATGGTTGGCATACTCCCCTGCACAAAGCCATGCGTAGAGCATGTA
AGAAAAGTACCTTTTCCCCCTCCGATCCTACCTCTCTTACACAGACGATT
GATAGTTTCTTCGAAGCGGTGGAACGAGGTGGCGCCGACGGCCTCGGAGG
CGCCGTTTTATTCGCAGATCTGGGTCGGCGTGTGACGGCACACTTTGACC
GTTCTGACCAGGCTAGCGCTATTAAGCGTTTAAGTTCTTACACAGTAGTT
ACAGGTGTGCCTTTCGTAGACTACTTACGCGGCTTTAAGAGCCTGGTTTC
GGGACTTTCTGGCGCTGGCCGAAAGAACGCTCCCACGGATGGTATGGTAC
AGAGCTATGTGCGTAATAGCATCGCTCAGCAATTTCCTACCTTGATGACA
TCGTTGTACCCGGGTGACTTGGCTTCGCGTGATATACCGTATGCCTCTGT
AGACGCCATGTGGACTGCCTTTATCCACACAGAATCTAACACCACACCCG
CTATTCGTGGCGCATCCTCTTCTTCTGTTCTTTCGCAACCAGCAGCGGAA
CCGCCGCTAGTTCACACTACTTCTAGTAGTGTCGGGGCGCGCAATAATGC
ACGCCCCTCTAAAAACTCTTCGACGGGTTGGACCCCCAATTCCCTGCGTA
GTAACGGTTCTGTGATGTCTGTTGGTGAAAACCCCGATCCCTTCACGGCT
GCGTTCGACGCGTGGCCTGCTGCAGAAGAAACGTGGGATCAGGTTTTTGT
TACAACGACACGTTGGGAAACTACTGACCCTCCTTTATGGACCCCACTAT
TATTGTCCCGTGCCGAGGCGGCCAAAACAGCGGCACTGGCTGCCAGCTTG
CGCTTTGTTGGCCAGCCGTCCAATGATGGACACAGGACCATCTCGCCGAC
GCCGCCCCCGCTTGCCCAGACACCCACCGTTTCACGACCTGTGTCAGCTC
TCCTCTCCGTCCCTGAGGCAGAAACTTTCCTGCCGAATCCTCGCGACACG
CCCTTCCTTGACATGCGCCTGATGACTCTATATGGTGAGTTCCCGACGGG
GAATCCTTTGCGGTGCTCCCCAGTAGCATGGGCCAACATCCGGGGTCCGG
CTTATTCTATGGCCGGATTACTTTCTGTGAACCCTCTCCCGCACTTGTCG
CTTCAGGACACAAAGGTGTGCCACGTCCTCAGCCATGTACCGCGCTCCGA
TCCGCGCACGGCGGATTGTCCGTACACCGCGGCCGCGCGTGCTTTACTGC
GCGTCTTACGCTGCGCGGTCCATGATGCGGCGCTTGCTGCTCGGCACACC
CTGAATCAGGACACCTCGCGGGGCGACAACGGAGATCACCGGAATGGGCG
TGGCTCCAACAACGACTCTGGCGGTCGCCGGAACTCGGGACGCCGCCCAA
CCATCACACGATCCGGGAGCGAAACGAATTCGGGATTATCGGGAGACGGG
CGCGGTCGCAACCGCGTCGACATCACTACAGACGGAGTTCGAAGGTGCAC
ACAGCCCACTCCTAGTTTAGAAGTTGCAGCTGCTCGTGTTCTCGGCCTTT
CCGAGGATGATCGTACTGATAGACCTCTCTCCTCCTTGTCCGCTCATGCT
CGCGCTACCGCTATAGAAGTAGCAAATCCCGAAGCACGTAAGGCCGCAGA
AATAGTACAGGCACAAACGGCCGCTGATGCGTTGAAGGCTACGAGCGACG
CCGCACGTGTAGCCGCAATTCAGAGAGAGTACGTAAAAATCGATACAAAA
CATATTTGGTTTGTTGACCCTATGCCCCCGTCTAGTACTGAAGACACGGG
CCTATACACGGCCAATTTATTAAAATCAATTCAGCGTGCTTTAGCGAATA
TTTTGGAACTCGCAGACGTCACCGGGAAGCAGAAATTTTCTTCCCCCACT
TGGGTGTATGGTTGGCATACTCCCCTGCACAAAGCCATGCGTAGAGCATG
TAAGAAAAGTACCTTTTCCCCCTCCGATCCTACCTCTCTTACACAGACGA
TTGATAGTTTCTTCGAAGCGGTGGAACGAGGTGGCGCCGACGGCCTCGGA
GGCGCCGTTTTATTCGCAGATCTGGGTCGGCGTGTGACGGCACACTTTGA
CCGTTCTGACCAGGCTAGCGCTATTAAGCGTTTAAGTTCTTACACAGTAG
TTACAGGTGTGCCTTTCGTAGACTACTTACGCGGCTTTAAGAGCCTGGTT
TCGGGACTTTCTGGCGCTGGCCGAAAGAACGCTCCCACGGATGGTATGGT
ACAGAGCTATGTGCGTAATAGCATCGCTCAGCAATTTCCTACCTTGATGA
CATCGTTGTACCCGGGTGACTTGGCTTCGCGTGATATACCGTATGCCTCT
GTAGACGCCATGTGGACTGCCTTTATCCACACAGAATCTAACACCACACC
CGCTATTCGTGGCGCATCCTCTTCTTCTGTTCTTTCGCAACCAGCAGCGG
AACCGCCGCTAGTTCACACTACTTCTAGTAGTGTCGGGGCGCGCAATAAT
GCACGCCCCTCTAAAAACTCTTCGACGGGTTGGACCCCCAATTCCCTGCG
TAGTAACGGTTCTGTGATGTCTGTTGGTGAAAACCCCGATCCCTTCACGG
CTGCGTTCGACGCGTGGCCTGCTGCAGAAGAAACGTGGGATCAGGTTTTT
GTTACAACGACACGTTGGGAAACTACTGACCCTCCTTTATGGACCCCACT
ATTA
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