mRNA_H-paniculata_contig39304.10222.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig39304.10222.1
Unique NamemRNA_H-paniculata_contig39304.10222.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig39304.10222.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT)

HSP 1 Score: 181 bits (458), Expect = 6.000e-52
Identity = 102/269 (37.92%), Postives = 155/269 (57.62%), Query Frame = 1
Query:    4 GTISISQGGYVREVLKRYGFHECREVPTRLE-GKVKISAPDTSSNGRSCNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDQCREDFSTCKHIFRYLGTVPDLGITFGGKSNGHGLEGFVAADWAEHVKDRKSTTGYVFKLNGGAISECSKKQKLVMWSSTEAKYVAAGEAGKEAAYPRELQGSVGFGFRGSATLFEDNK-SINLNKGSGAHCRTKHIGVLWHEIREWVQEGTLALKHVQIGHQLADILMKVLSRVKFQRLRNLL 804
            G ++ISQ  Y++ +LKR+G  +C+ V T LE GK     PD  +     N+ EY+ ++G L Y +T TRPD+A AV   ++ M    +E +   K + RY+    + G+ F GKS    L G+  ADWA  +  R+ST+GYVF++NG  +S CSK+Q  V  S+TEA+YVA   A +E  + R L   +G      + + EDN+ +I L+K    H RTKHI V +H +RE V + ++ + +      LAD++ K L R  FQ+ R++L
Sbjct:   36 GKMTISQSTYLQGILKRFGMEQCKPVSTPLEPGKHFQELPDDENP---TNTNEYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIGEKQDQPSIMNEDNQGAIELSKNPRFHNRTKHIDVAYHFVREKVGDKSINVNYCSTDKMLADVMTKSLPRQTFQKFRDML 301          
BLAST of mRNA_H-paniculata_contig39304.10222.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 175 bits (444), Expect = 5.040e-49
Identity = 101/270 (37.41%), Postives = 155/270 (57.41%), Query Frame = 1
Query:    1 NGTISISQGGYVREVLKRYGFHECR--EVPTRLEGKVKISAPDTSSNGRSCNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDQCREDFSTCKHIFRYLGTVPDLGITFGGKSNGHGLEGFVAADWAEHVKDRKSTTGYVFKLNGGAISECSKKQKLVMWSSTEAKYVAAGEAGKEAAYPRELQGSVGFGFRGSATLFEDNKS-INLNKGSGAHCRTKHIGVLWHEIREWVQEGTLALKHVQIGHQLADILMKVLSRVKFQRLRNL 801
            +G + I Q  Y   ++K+YG   C+  E P  L  K+ +SA + S      N  EY+  VGSL+Y S+ TRPDI +AV+  A+   +   E ++  K IFRYL    + G+ +   +N   + GF  ADWA  + DRKST+GY F++NG A+S  SKKQ  V  S+ EA+YVA   A +EA + R+L   +        T++EDN+S I ++K    H R+KHI + +H +R+ V++ TL + +   G  LAD+  K + + +F++LR L
Sbjct:  112 DGKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKL-VSAMEDSEL---FNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKKLREL 376          
BLAST of mRNA_H-paniculata_contig39304.10222.1 vs. uniprot
Match: A0A060SU91_PYCCI (Uncharacterized protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SU91_PYCCI)

HSP 1 Score: 172 bits (435), Expect = 8.550e-49
Identity = 107/279 (38.35%), Postives = 151/279 (54.12%), Query Frame = 1
Query:    7 TISISQGGYVREVLKRYGFHECREVPTRLEGKVKISAPDTSSNGRSCNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDQCREDFSTCKHIFRYLGTVPDLGITFGGKSNG---HGLE--GFVAADWAEHVKDRKSTTGYVFKLNGGAISECSKKQKLVMWSSTEAKYVAAGEAGKEAAYPRELQG--------SVGFGFRGSATLFEDNKSINLNKGSGAHCRTKHIGVLWHEIREWVQEGTLALKHVQIGHQLADILMKVLSRVKFQRLRNLL 804
            T+SISQ  YV  +LKR+G  +CR V T +E   K+     +      +   Y+  +G+LMYA  G+RPDIA+AV   ++       E ++    +FRYL     L +T+G        HGL   G+  ADWA    DR+ST+ YVFKL GGAIS CS+KQ+ +  SSTEA+YVA   A KE  +   L          ++    +    L ++  ++ L K S  H RTKHI V  H IR+ ++ GTL +++V  G Q+AD+L K L+R K     NLL
Sbjct:    7 TLSISQEQYVETILKRHGMSDCRPVSTPMEANFKLDKLAEAE----IDPKPYQSALGALMYAMLGSRPDIAFAVGTLSKHASTPGTEHWNALMRVFRYLRGTSGLRLTYGKDLKPLCEHGLTVVGYSDADWAGDRNDRRSTSAYVFKLGGGAISWCSRKQQSIAQSSTEAEYVALALAAKEGLWLSTLLSDLDSPVFHALSSRLQVPLILVDNQSAMALAKNSSFHDRTKHIAVRHHFIRDELERGTLTVEYVPTGDQVADVLTKSLAREKHTYFTNLL 281          
BLAST of mRNA_H-paniculata_contig39304.10222.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM)

HSP 1 Score: 171 bits (433), Expect = 3.620e-48
Identity = 102/262 (38.93%), Postives = 150/262 (57.25%), Query Frame = 1
Query:    7 TISISQGGYVREVLKRYGFHECREVPTRLEGKVKISAPDTSSNGRSCNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDQCREDFSTCKHIFRYLGTVPDLGITFGGKSNGHGLEGFVAADWAEHVKDRKSTTGYVFKLNGGAISECSKKQKLVMWSSTEAKYVAAGEAGKEAAYPRELQGSVGFGFRGSATLFEDNKS-INLNKGSGAHCRTKHIGVLWHEIREWVQEGTLALKHVQIGHQLADILMKVLSRVKFQR 789
            TI ++Q  Y++ + +++G  +C+ V T  +   K+  P  S +        YR +VG+LMY +T TRPDIA AV + A+  E   +  +   K I +YL T  DLG+ F G + G  L G+  A+WA  +  R+STTGYVF LNG AIS  SK+Q  V  SSTEA+Y+A   A +EA + R+L   VG    G+ T F+DN+  I L K    H RTKHI + +H +RE V++  + L++      +AD   K L+R K ++
Sbjct:   45 TIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKP--SEDEDFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALARPKHRQ 303          
BLAST of mRNA_H-paniculata_contig39304.10222.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 175 bits (443), Expect = 1.870e-47
Identity = 99/270 (36.67%), Postives = 152/270 (56.30%), Query Frame = 1
Query:    7 TISISQGGYVREVLKRYGFHECREVPTRLEGKVKIS---APDTSSNGRSCNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDQCREDFSTCKHIFRYLGTVPDLGITFGGKSNGHGLEGFVAADWAEHVKDRKSTTGYVFKLNGGAISECSKKQKLVMWSSTEAKYVAAGEAGKEAAYPRELQGSVGFGFRGSATLFEDNKS-INLNKGSGAHCRTKHIGVLWHEIREWVQEGTLALKHVQIGHQLADILMKVLSRVKFQRLRNLL 804
            TIS+ Q  Y+  +L R+   + + + T ++    ++   +P T        +  YR  +GSLMYA+ GTRPD++YAV   ++ M++     +   K + RYL    +  +T+GG  N +G+EGF  ADW      R+S +GYVF ++GGA+S  SKKQ +V  SSTEA+YVA   A KE  + R   G +   F    TL+ DN+S I L K +  H RTKHI + +H IR+ V+ G + + +       AD+L K L+R K +++R L+
Sbjct:  276 TISMLQRAYIDTILSRFNLQDAKSLTTAIDPSFSLTTDQSPSTPQQYDDMRNILYREAIGSLMYAAIGTRPDVSYAVTALSQFMQNPGHPHWEAAKRVMRYLKGTKEEWLTYGG-DNANGMEGFSDADWGSS-DHRRSISGYVFLIDGGAVSWSSKKQPIVALSSTEAEYVAMTHAAKEVLWTRAFLGEIISPFDKPTTLYADNQSAITLAKDNLYHARTKHIAIRFHFIRDIVERGEVDIVYCPTADMAADVLTKPLTRPKMEKMRGLI 543          
BLAST of mRNA_H-paniculata_contig39304.10222.1 vs. uniprot
Match: A0A401H4R8_9APHY (Uncharacterized protein n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H4R8_9APHY)

HSP 1 Score: 179 bits (454), Expect = 1.890e-47
Identity = 103/262 (39.31%), Postives = 155/262 (59.16%), Query Frame = 1
Query:    7 TISISQGGYVREVLKRYGFHECREVPTRLEGKVKISA---PDTSSNGRSCNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDQCREDFSTCKHIFRYLGTVPDLGITFGGKSNGHGLEGFVAADWAEHVKDRKSTTGYVFKLNGGAISECSKKQKLVMWSSTEAKYVAAGEAGKEAAYPRELQGSVGFGFRGSATLFEDNKS-INLNKGSGAHCRTKHIGVLWHEIREWVQEGTLALKHVQIGHQLADILMKVLSRVK 780
            T+++SQ  Y+  +++R+GF + + + T ++    +S+   P T++   +     YR  VGSLMYAS GTRPDI YAV   +R  ++  R  +   K +FRYL    DL +T+G  + G  L G+  AD + H +DRK+ +GY F ++GGA+S  SK+Q+++  S+TEA+YVAA  A KEA + R L G V   F  + TL+ DN+S I L++ +  H RTKHI + +H IR  V+E  L L +      +AD L K L   K
Sbjct: 1282 TLALSQTSYINSIIQRFGFEDLKPLTTPMDPNTTLSSAQSPQTTAEAAAMRDIPYREAVGSLMYASLGTRPDITYAVSFLSRFSDNPGRAHWEAVKRVFRYLSGTKDLKLTYG--AQGLDLVGYTDADGSMH-EDRKAISGYAFLIDGGAVSWSSKRQEIIALSTTEAEYVAATHAAKEALWLRSLIGQVFQPFSEAVTLYSDNQSAITLSRDNQYHARTKHIDIRFHFIRWIVEEEKLKLIYCPTEDMVADCLTKALPSPK 1540          
BLAST of mRNA_H-paniculata_contig39304.10222.1 vs. uniprot
Match: A0A2N9GS71_FAGSY (Uncharacterized protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GS71_FAGSY)

HSP 1 Score: 168 bits (426), Expect = 1.890e-47
Identity = 98/265 (36.98%), Postives = 144/265 (54.34%), Query Frame = 1
Query:   16 ISQGGYVREVLKRYGFHECREVPTRLEGKVKISA---PDTSSNGRSCNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDQCREDFSTCKHIFRYLGTVPDLGITFGGKSNGHGLEGFVAADWAEHVKDRKSTTGYVFKLNGGAISECSKKQKLVMWSSTEAKYVAAGEAGKEAAYPRELQGSVGFGFRGSATLFEDNKSINLNKGSGAHCRTKHIGVLWHEIREWVQEGTLALKHVQIGHQLADILMKVLSRVKFQRLRNL 801
            +SQ  Y+R+VL+++   + + + T L    ++S    P       + +   Y   VG LMYA   TRPD+A+AV   +R M +  RE ++  K IFRYL    + GI F  +   + + G+V AD+A  V DR+STTGYVF L+GG I   S  Q +V  S+TEA+Y+A  EA KEA + + L   +G    G     +   +I L K    H RTKHI V +H+IRE +  G + L+ V      AD+LMK ++  KF+   +L
Sbjct:   14 LSQKNYIRKVLEKFSMLDAKPMSTPLANHFRLSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLNQGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLMKPVTTAKFKHCLDL 278          
BLAST of mRNA_H-paniculata_contig39304.10222.1 vs. uniprot
Match: J9KJ72_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KJ72_ACYPI)

HSP 1 Score: 176 bits (447), Expect = 1.580e-46
Identity = 103/268 (38.43%), Postives = 152/268 (56.72%), Query Frame = 1
Query:    4 GTISISQGGYVREVLKRYGFHECREVPTRLEGKVKISAPDTSSNGRSCNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDQCREDFSTCKHIFRYLGTVPDLGITFGGKSNGHGLEGFVAADWAEHVKDRKSTTGYVFKLNGGAISECSKKQKLVMWSSTEAKYVAAGEAGKEAAYPRELQGSVGFGFRGSATLFEDNK-SINLNKGSGAHCRTKHIGVLWHEIREWVQEGTLALKHVQIGHQLADILMKVLSRVKFQRLRNLL 804
            G + I+Q  Y+ +VLK++    C  + T +E K+ I       N + CN   YR +VGSLMYA  G+RPD++YA++   R         ++  K + RY+    + G+ F  +SN   L GFV ADWA    DRKSTTGY+FK+    +S  +K+Q  V  SSTEA+Y+A   A  EA + R+L   +     G   LFEDN+ +I+L+     H R+KHI    H +RE V+EG + LK++   +QLAD+L K L   +F+RL  ++
Sbjct: 1015 GKLYINQTQYLEDVLKKFNMDNCNTISTPIESKLNIE----EDNKQECNQP-YRQLVGSLMYAMLGSRPDLSYALNFFCRYQSKPNECHWNHLKRVLRYVKGTLNNGLCFHRQSNSTELIGFVDADWASSTIDRKSTTGYLFKVFNCLVSWSTKRQPTVALSSTEAEYMAVSNATCEAIWIRKLLKDLDVTICGPVILFEDNQGAIHLSSSQELHKRSKHIDTKHHFVREKVKEGLIELKYIPTSNQLADLLTKGLGNERFKRLLKMI 1277          
BLAST of mRNA_H-paniculata_contig39304.10222.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY)

HSP 1 Score: 174 bits (442), Expect = 7.520e-46
Identity = 111/274 (40.51%), Postives = 153/274 (55.84%), Query Frame = 1
Query:    7 TISISQGGYVREVLKRYGFHECREVPTRLEGKVKIS---APDTSSNGRSCNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDQCREDFSTCKHIFRYLGTVPDLGITFGGKSNGHGLEGFVAADW--AEHVKDRKSTTGYVFKLNGGAISECSKKQKLVMWSSTEAKYVAAGEAGKEAAYPRELQGSVGFG--FRGSATLFEDNKS-INLNKGSGAHCRTKHIGVLWHEIREWVQEGTLALKHVQIGHQLADILMKVLSRVKFQRLRNLL 804
            T+S+SQ  Y+  +L R+   + + + T L+    +S    P T        +  YR  +GSLMYA+ GTRPDIAYAV   ++ M++  R  +   K +FRYL    +  +TFG  ++G  +EGF  ADW  AEH   R S +GYVF L+GGA+S  +KKQ +V  SSTEA+Y+A   A KEA + R L   V      R    L  DNKS I L K    H RTKHI + +H IRE V+ G + L++ +     ADI  KVL R+K + L  L+
Sbjct: 1168 TLSLSQRAYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREAIGSLMYAALGTRPDIAYAVTALSQFMQNPGRPHWEAAKRVFRYLAGTRERWLTFGETTDG--VEGFSDADWGSAEH---RHSISGYVFLLDGGAVSWSAKKQNVVALSSTEAEYIAITHATKEALWLRSLLADVLHPDILRYPVRLHSDNKSAIALAKDDAYHARTKHIDIRFHFIRETVENGQVILQYRRTEDMPADIFTKVLPRIKVEHLSRLI 1436          
BLAST of mRNA_H-paniculata_contig39304.10222.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS)

HSP 1 Score: 167 bits (422), Expect = 7.540e-46
Identity = 103/264 (39.02%), Postives = 146/264 (55.30%), Query Frame = 1
Query:   10 ISISQGGYVREVLKRYGFHECREVPTRLEGKVKISAPDTSSNGRSCNSTEYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDQCREDFSTCKHIFRYLGTVPDLGITFGGKSNGHGLEGFVAADWAEHVKDRKSTTGYVFKLNGGAISECSKKQKLVMWSSTEAKYVAAGEAGKEAAYPRELQGSVGFGFRGSATLFEDNKS-INLNKGSGAHCRTKHIGVLWHEIREWVQEGTLALKHVQIGHQLADILMKVLSRVKFQRLRN 798
            I I+Q  Y  E LK+YG   C  V   +    K+S    +  G + + T ++ +VGSL Y  T TRPD+ Y+V+  +R ME+   +     K I RY+      GI +  +  G  L GFV +D+A  V DRKST+GYVF L GGA+S  SKKQ +V  S+TEA++VAA     +A + R + G +G+      TLF DN S I L+K    H R+KHI V ++ +R+ V E  + LK      QL+DI+ K +    F+RLR 
Sbjct:  109 IFINQQKYAEETLKKYGMEGCNAVKNPIVPGNKLSR---AGGGDAADPTMFKQLVGSLRYL-TATRPDLIYSVNLVSRYMENPNEQHLLAAKRILRYVQGTCGFGIRYK-QGEGEKLVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLKFCGTEDQLSDIMTKAVKLEVFERLRR 367          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig39304.10222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9D5L2_PARCT6.000e-5237.92Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A7D9M6E1_PARCT5.040e-4937.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060SU91_PYCCI8.550e-4938.35Uncharacterized protein n=2 Tax=Pycnoporus cinnaba... [more]
H3GB69_PHYRM3.620e-4838.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y9ZVS1_9AGAM1.870e-4736.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401H4R8_9APHY1.890e-4739.31Uncharacterized protein n=2 Tax=Sparassis crispa T... [more]
A0A2N9GS71_FAGSY1.890e-4736.98Uncharacterized protein n=3 Tax=Fagus sylvatica Ta... [more]
J9KJ72_ACYPI1.580e-4638.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A401GN13_9APHY7.520e-4640.51Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A6D2JBX5_9BRAS7.540e-4639.02Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig39304contigH-paniculata_contig39304:578..1452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score174.9
Seed ortholog evalue5.2e-41
Seed eggNOG ortholog7029.ACYPI24114-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SQRW@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons2
Model size810
Cds size810
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930205.904481-CDS-H-paniculata_contig39304:577..6991622930205.904481-CDS-H-paniculata_contig39304:577..699Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39304 578..699 +
1691481190.186962-CDS-H-paniculata_contig39304:577..6991691481190.186962-CDS-H-paniculata_contig39304:577..699Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39304 578..699 +
1622930205.9210413-CDS-H-paniculata_contig39304:764..14521622930205.9210413-CDS-H-paniculata_contig39304:764..1452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39304 765..1452 +
1691481190.1977158-CDS-H-paniculata_contig39304:764..14521691481190.1977158-CDS-H-paniculata_contig39304:764..1452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig39304 765..1452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig39304.10222.1prot_H-paniculata_contig39304.10222.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig39304 578..1452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig39304.10222.1

>prot_H-paniculata_contig39304.10222.1 ID=prot_H-paniculata_contig39304.10222.1|Name=mRNA_H-paniculata_contig39304.10222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=270bp
NGTISISQGGYVREVLKRYGFHECREVPTRLEGKVKISAPDTSSNGRSCN
STEYRGMVGSLMYASTGTRPDIAYAVHQAARRMEDQCREDFSTCKHIFRY
LGTVPDLGITFGGKSNGHGLEGFVAADWAEHVKDRKSTTGYVFKLNGGAI
SECSKKQKLVMWSSTEAKYVAAGEAGKEAAYPRELQGSVGFGFRGSATLF
EDNKSINLNKGSGAHCRTKHIGVLWHEIREWVQEGTLALKHVQIGHQLAD
ILMKVLSRVKFQRLRNLLM*
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mRNA from alignment at H-paniculata_contig39304:578..1452+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig39304.10222.1 ID=mRNA_H-paniculata_contig39304.10222.1|Name=mRNA_H-paniculata_contig39304.10222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=875bp|location=Sequence derived from alignment at H-paniculata_contig39304:578..1452+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGGTACCATATCAATATCCCAAGGTGGCTACGTCCGCGAGGTACTGAA AAGATACGGTTTTCACGAGTGTCGAGAGGTACCCACTCGCCTAGAGGGAA AAGTGAAGATTTCGGCACCCGAGTCGGCCGACAAGTCCCCCGAATCGAAG TCGCTTGGGGCTGAACTGTCGGACATAGGCGCAGGAGTACAAGCAGCAAT GGGAGAAGTTGCAATTCAACTGAATACAGAGGCATGGTAGGATCCCTCAT GTACGCCTCGACAGGAACTAGACCTGATATAGCATACGCAGTACATCAAG CAGCACGTCGTATGGAGGACCAGTGTCGAGAAGACTTCAGTACATGCAAG CACATTTTTCGTTATCTCGGTACTGTGCCTGACCTCGGCATTACGTTCGG CGGGAAGAGTAATGGTCACGGTCTGGAAGGATTCGTTGCTGCCGATTGGG CGGAACATGTCAAGGACCGAAAGTCCACAACAGGATATGTCTTCAAGCTG AACGGTGGTGCGATAAGTGAGTGCTCCAAGAAGCAAAAGTTAGTCATGTG GTCCAGTACGGAGGCAAAGTACGTTGCTGCAGGAGAAGCAGGAAAGGAGG CGGCATATCCTAGGGAATTACAAGGATCGGTAGGTTTCGGATTCAGGGGG AGCGCGACATTATTTGAGGACAACAAGTCTATCAATCTCAATAAGGGATC TGGCGCACACTGCAGGACAAAGCACATCGGGGTGCTCTGGCACGAAATTC GAGAGTGGGTTCAGGAAGGAACATTGGCGTTGAAACACGTGCAGATCGGC CACCAACTCGCTGACATTTTAATGAAAGTACTGAGCAGAGTAAAGTTTCA GAGACTTAGAAATTTACTCATGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig39304:578..1452+

>mRNA_H-paniculata_contig39304.10222.1 ID=mRNA_H-paniculata_contig39304.10222.1|Name=mRNA_H-paniculata_contig39304.10222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1620bp|location=Sequence derived from alignment at H-paniculata_contig39304:578..1452+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGGTACCATATCAATATCCCAAGGTGGCTACGTCCGCGAGGTACTGAA
AAGATACGGTTTTCACGAGTGTCGAGAGGTACCCACTCGCCTAGAGGGAA
AAGTGAAGATTTCGGCACCCGAAACGGTACCATATCAATATCCCAAGGTG
GCTACGTCCGCGAGGTACTGAAAAGATACGGTTTTCACGAGTGTCGAGAG
GTACCCACTCGCCTAGAGGGAAAAGTGAAGATTTCGGCACCCGATACAAG
CAGCAATGGGAGAAGTTGCAATTCAACTGAATACAGAGGCATGGTAGGAT
CCCTCATGTACGCCTCGACAGGAACTAGACCTGATATAGCATACGCAGTA
CATCAAGCAGCACGTCGTATGGAGGACCAGTGTCGAGAAGACTTCAGTAC
ATGCAAGCACATTTTTCGTTATCTCGGTACTGTGCCTGACCTCGGCATTA
CGTTCGGCGGGAAGAGTAATGGTCACGGTCTGGAAGGATTCGTTGCTGCC
GATTGGGCGGAACATGTCAAGGACCGAAAGTCCACAACAGGATATGTCTT
CAAGCTGAACGGTGGTGCGATAAGTGAGTGCTCCAAGAAGCAAAAGTTAG
TCATGTGGTCCAGTACGGAGGCAAAGTACGTTGCTGCAGGAGAAGCAGGA
AAGGAGGCGGCATATCCTAGGGAATTACAAGGATCGGTAGGTTTCGGATT
CAGGGGGAGCGCGACATTATTTGAGGACAACAAGTCTATCAATCTCAATA
AGGGATCTGGCGCACACTGCAGGACAAAGCACATCGGGGTGCTCTGGCAC
GAAATTCGAGAGTGGGTTCAGGAAGGAACATTGGCGTTGAAACACGTGCA
GATCGGCCACCAACTCGCTGACATTTTAATGAAAGTACTGAGCAGAGTAA
AGTTTCAGAGACTTAGAAATTTACTCATGTGATACAAGCAGCAATGGGAG
AAGTTGCAATTCAACTGAATACAGAGGCATGGTAGGATCCCTCATGTACG
CCTCGACAGGAACTAGACCTGATATAGCATACGCAGTACATCAAGCAGCA
CGTCGTATGGAGGACCAGTGTCGAGAAGACTTCAGTACATGCAAGCACAT
TTTTCGTTATCTCGGTACTGTGCCTGACCTCGGCATTACGTTCGGCGGGA
AGAGTAATGGTCACGGTCTGGAAGGATTCGTTGCTGCCGATTGGGCGGAA
CATGTCAAGGACCGAAAGTCCACAACAGGATATGTCTTCAAGCTGAACGG
TGGTGCGATAAGTGAGTGCTCCAAGAAGCAAAAGTTAGTCATGTGGTCCA
GTACGGAGGCAAAGTACGTTGCTGCAGGAGAAGCAGGAAAGGAGGCGGCA
TATCCTAGGGAATTACAAGGATCGGTAGGTTTCGGATTCAGGGGGAGCGC
GACATTATTTGAGGACAACAAGTCTATCAATCTCAATAAGGGATCTGGCG
CACACTGCAGGACAAAGCACATCGGGGTGCTCTGGCACGAAATTCGAGAG
TGGGTTCAGGAAGGAACATTGGCGTTGAAACACGTGCAGATCGGCCACCA
ACTCGCTGACATTTTAATGAAAGTACTGAGCAGAGTAAAGTTTCAGAGAC
TTAGAAATTTACTCATGTGA
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