mRNA_H-paniculata_contig3925.10213.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig3925.10213.1 vs. uniprot
Match: A0A6H5L8P8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P8_9PHAE) HSP 1 Score: 115 bits (288), Expect = 5.030e-22 Identity = 236/325 (72.62%), Postives = 255/325 (78.46%), Query Frame = 3
Query: 1263 AAQNMAAYPLPVGLVPXXXXXXXXXXXXXXXXXXXXXXXXXXLAADGGDRAALGLLFQLCNGQLWLRQAGWNEEAEERHGVAWALDLLRATKLELGSNRLSGSIPKELGVMSCLLCLRLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGNKLSGEVPIKAFANLPVLEWLSMTDNPGLVVKRGRFGGSTQSLLKKAVPPKCDVFV 2237
AA AAYPLP+GL DGGDRAAL +LFQ C+G WLR+AGW+ +++ RHGVAW + R KLELG+NRL G IP+ELGVMS L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GN L+GE+PIKAFA +P L WLS+TDNP L VKRGRF +TQS+LKK +P KCDV +
Sbjct: 1510 AAAIFAAYPLPMGLA-----AGVPGHNSTVAREAASMASKFAAEPDGGDRAALAILFQSCHGLRWLRRAGWDGDSDRRHGVAWTTENARVLKLELGNNRLEGYIPRELGVMSRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNGVGNDLTGEIPIKAFAKMPNLAWLSITDNPRLTVKRGRFVTTTQSVLKKVLPSKCDVML 1829
BLAST of mRNA_H-paniculata_contig3925.10213.1 vs. uniprot
Match: D8LSH3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH3_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 2.510e-16 Identity = 53/112 (47.32%), Postives = 64/112 (57.14%), Query Frame = 3
Query: 1263 AAQNMAAYPLPVGLVPXXXXXXXXXXXXXXXXXXXXXXXXXXLAADGGDRAALGLLFQLCNGQLWLRQAGWNEEAEERHGVAWALDLLRATKLELGSNRLSGSIPKELGVMS 1598
AA AAYPLP+GL DGGDRAAL +LF+ C+G WLR+AGW+ +++ RHGVAW + R KLELG+NRL G IPKELGVMS
Sbjct: 980 AAAMFAAYPLPMGLA-----AGVPGHNSTVAREAASMASKFAAEPDGGDRAALAILFRSCHGLRWLRRAGWDGDSDGRHGVAWTAENARVLKLELGNNRLEGYIPKELGVMS 1086 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3925.10213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3925.10213.1 >prot_H-paniculata_contig3925.10213.1 ID=prot_H-paniculata_contig3925.10213.1|Name=mRNA_H-paniculata_contig3925.10213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=705bp MEEELEAERRERSRLERLLQGDDGRKKDGARKTSPSNINSSRSDARSARRback to top mRNA from alignment at H-paniculata_contig3925:1970..16240- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3925.10213.1 ID=mRNA_H-paniculata_contig3925.10213.1|Name=mRNA_H-paniculata_contig3925.10213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=14271bp|location=Sequence derived from alignment at H-paniculata_contig3925:1970..16240- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3925:1970..16240- >mRNA_H-paniculata_contig3925.10213.1 ID=mRNA_H-paniculata_contig3925.10213.1|Name=mRNA_H-paniculata_contig3925.10213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4230bp|location=Sequence derived from alignment at H-paniculata_contig3925:1970..16240- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |