mRNA_H-paniculata_contig392.10199.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig392.10199.1 vs. uniprot
Match: A0A6H5JZQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ7_9PHAE) HSP 1 Score: 231 bits (589), Expect = 4.960e-63 Identity = 163/294 (55.44%), Postives = 193/294 (65.65%), Query Frame = 1
Query: 229 DMSDDEVSLLEVDDSELSSAMQEAGISIKEVDAKSGAFELEVLSEDVSTFLILAPEDEYLGAKVQGFIPREDGGLSALEMHGQLVEGNVLTHLNGQNAREMDFSGILKACRGPERGGLPRPLAMRFARMDSLLPPSPSPAAQPL----ASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL--LEDLMGGLNLSGFGVSDPNEASASATGRESGESRRIQVPGMAHIKDVFRTELQAQGMLGVLEGGGENRARGGSGGDDNFSGDGASKPPSGGENLFLNMLRKLESIDVLGE 1092
D SDDEVSLL VD+ EL++ + EAGI +K VD + + E+ VLSEDVSTFL+ APE+EYLGAKV GF+PREDGGLSALEMHGQL+EG+VLTHLNG NAR +DF+ ILKACRGP+RGGLPRPL M+F+R ++L PP+ SPA A XXXXXXXXXXXXX L L+D MGGL+L G GE+R +PGM+HIK VFR ELQAQGMLG G G+ D S PP GE LFLNMLR+LE++DV GE
Sbjct: 16 DDSDDEVSLLVVDEDELNTTLNEAGIQVK-VDKEGSSVEVSVLSEDVSTFLMFAPEEEYLGAKVTGFVPREDGGLSALEMHGQLLEGDVLTHLNGSNARLLDFTDILKACRGPDRGGLPRPLVMKFSRSEALSPPA-SPAXXXXXXXTAERGQASAATSKTDAXXXXXXXXXXXXXGASSLLADLDDFMGGLSLPG------------------GEAR---IPGMSHIKGVFRAELQAQGMLG---GSGDGXXXXXXXXXXXXXXD--SSPP--GEGLFLNMLRRLENVDVAGE 279
BLAST of mRNA_H-paniculata_contig392.10199.1 vs. uniprot
Match: D7FQI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI4_ECTSI) HSP 1 Score: 192 bits (489), Expect = 1.010e-54 Identity = 99/140 (70.71%), Postives = 120/140 (85.71%), Query Frame = 1
Query: 229 DMSDDEVSLLEVDDSELSSAMQEAGISIKEVDAKSGAFELEVLSEDVSTFLILAPEDEYLGAKVQGFIPREDGGLSALEMHGQLVEGNVLTHLNGQNAREMDFSGILKACRGPERGGLPRPLAMRFARMDSLLPP-SPSP 645
D SDDEVSLL VD+ EL++ + EAGI +K VDA+ + E+ VLSEDVSTFL+ APE+EYLGAKV GF+PREDGGLSALEMHGQL+EG+VLTHLNG NAR +DF+ ILKACRGP+RGGLPRPL M+F+R ++L PP SP+P
Sbjct: 16 DDSDDEVSLLVVDEDELNTTLNEAGIQVK-VDAEGSSVEVSVLSEDVSTFLMFAPEEEYLGAKVTGFVPREDGGLSALEMHGQLLEGDVLTHLNGSNARLLDFTDILKACRGPDRGGLPRPLVMKFSRSEALSPPASPAP 154 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig392.10199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig392.10199.1 >prot_H-paniculata_contig392.10199.1 ID=prot_H-paniculata_contig392.10199.1|Name=mRNA_H-paniculata_contig392.10199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=415bp MVDANSSASPLVDGNVETEDQQENAESTEDGTSFEFDSDMSDDEVSLLEVback to top mRNA from alignment at H-paniculata_contig392:8980..13688- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig392.10199.1 ID=mRNA_H-paniculata_contig392.10199.1|Name=mRNA_H-paniculata_contig392.10199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4709bp|location=Sequence derived from alignment at H-paniculata_contig392:8980..13688- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig392:8980..13688- >mRNA_H-paniculata_contig392.10199.1 ID=mRNA_H-paniculata_contig392.10199.1|Name=mRNA_H-paniculata_contig392.10199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2490bp|location=Sequence derived from alignment at H-paniculata_contig392:8980..13688- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |