mRNA_H-paniculata_contig392.10198.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig392.10198.1 vs. uniprot
Match: A0A6H5JZQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ7_9PHAE) HSP 1 Score: 419 bits (1077), Expect = 1.300e-126 Identity = 383/741 (51.69%), Postives = 445/741 (60.05%), Query Frame = 1
Query: 1 LSWFRSSQGGGFAEIEGVDGPFYQPSADDIGMRICIKCTLTEAALS-PAVGRGG------RXXXXXXXXXXXXXXXXXPSPTRQQVPEVAFAEVGPIILAPDVGAEVNELLLRGEDNPAVFRGLVRRDTPGETVHVYVEVSPSQVRVLVEPTPLAPTEV--GEAAVAAPQALGTSNVEGVGADSASAVADNG---------GRKMSAERTVEATVNGSGAEAAVAADEFVVIDRNDGMAAVADATGATVEGSRGRDGEVLVLAEGRYQDGVLVALDPARSAVLKLTL-RRRGDNG------NQGST---VVILLRAKDSRQRDVLALTLRGWRQAAVGPEMVIDDFPEATEAEQEKENYLELKAAAAHFAAAFDEDTVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDSYASSYVSDTDTENDLRGGGETSDTAGGGRNTLGDGSASLXXXXXXXXXXXXXXXXXXXXXTRKASVLPMALPTTAVDDDEVGGAGSGGGVRGVTMMSSSSWGDASPWGDNEVGEAGGGKEFRSLSNLLEDLRQARAIADHRERQLKEAHGMWQAGEARRERVEAELHLVSGELDLLRPLSRSLASRVEGKEVAEEKAKALWAEVVTLKTQLAAATESADLLGKKAGAAERESGAREERLSGLEKVVRRLGEEAEAAQSELACERSTKDEAVARASKAEREVDQAKARGAVLDNKVASLENEKLGFVADANASRARAEDLEAQMSAARLAE 2139
L WFRSS GGGFAEI+GV+GPFYQPSADD+G RICIKCTL AL+ G GG R XXXXXX SP RQQ +V+FAEVGPI+L VGAEV++LL D PAVFRGLVRRDTPGETV V VEV Q+RV+ +P A V G + A P + A AVA+ G K E T G+G E A AAD + A D AT V+VLAEGRY GVLV L+PAR L+LT+ RR+G +Q T VV+LL A D QRDVLALTLRG RQAA+GP + +DD+PE T+A Q E+YLELKAAAA+FA+A+DED XXXXXXXXXXXXXXXXXXXXXXX DT XXXXXXXXXXXXXXXXXXXXX R+AS G GSG T+ ++S G AG G E RSL++LLEDLRQARAIAD+R RQLKEAH MW+AGEA R++ EAEL LVS ELDLLRP S+SLA+R EGKE AEE A L +EV TL+ QLAAA ESA+ LG +AG AE E+GA +LSGLE A SELA ER+ +EAVARASKAERE+DQA+AR AVL+NK+A+LE +KL +ADAN+SRARA LE + SAAR AE
Sbjct: 465 LVWFRSSSGGGFAEIKGVEGPFYQPSADDLGSRICIKCTLAGTALNLGGTGSGGFLSPTNRGKERRGRHGRXXXXXXSRSPQRQQ-DQVSFAEVGPIVLDSAVGAEVDKLL--SADGPAVFRGLVRRDTPGETVRVRVEVGREQIRVVAQPGDAAAAAVADGNSPGAEPPGVTVETAAAASVQPAGAVAEGSPEAALATGSGEKDDGAAAEEET--GAGGEVAAAADG----GKPSPSATSQDGAEATA---------VVVLAEGRYSSGVLVTLEPARPTALRLTVGRRQGGEAAAAVGVSQAPTPPAVVLLLGAVDGIQRDVLALTLRGRRQAALGPGITVDDYPEETKAHQAHEDYLELKAAAANFASAYDEDGTSATSKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDT---------------------------XXXXXXXXXXXXXXXXXXXXXXXXXRRASWK---------------GGGSG------TLARAASRGS--------FPAAGAGDEPRSLTDLLEDLRQARAIADYRGRQLKEAHSMWEAGEASRQKAEAELSLVSSELDLLRPFSKSLAARAEGKEAAEEAAGNLASEVETLREQLAAAVESAERLGSRAGTAEDEAGASASKLSGLEXXXXXXXXXXXVAHSELAKERAGAEEAVARASKAERELDQARARAAVLENKLATLEKDKLELLADANSSRARASALEEKYSAARAAE 1131
BLAST of mRNA_H-paniculata_contig392.10198.1 vs. uniprot
Match: D7FUZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ4_ECTSI) HSP 1 Score: 229 bits (585), Expect = 4.230e-63 Identity = 177/391 (45.27%), Postives = 208/391 (53.20%), Query Frame = 1
Query: 1 LSWFRSSQGGGFAEIEGVDGPFYQPSADDIGMRICIKCTLTEAAL-----------SPAVGRGGRXXXXXXXXXXXXXXXXXPSPTRQQVPEVAFAEVGPIILAPDVGAEVNELLLRGEDNPAVFRGLVRRDTPGETVHVYVEVSPSQVRVLVEPTPLAPTEVGEAAVAAPQALGTSNVEGVGADSASAVADNGGRKMSAERTVEATVNGSGAEAAVAADEFVVIDRNDGMAAVADATGATVEGSRGRDGEVL---------------------VLAEGRYQDGVLVALDPARSAVLKLTLRRRGDNGNQGSTV-----------VILLRAKDSRQRDVLALTLRGWRQAAVGPEMVIDDFPEATEAEQEKENYLELKAAAAHFAAAFDED 1044
L WFRSS GGGFAEI+GV+GP+YQPSADD+G RICIKCTL AL SP G GR XXXXX SP RQQ +V+FAE GPI+L VGAEV++LL D PAVFRGLVRRDTPGETV V VEV Q+RV+ EP A G + A P + VE A S + D V G EAA+A ++ DG VLAEGRY GVLV L+PAR VL+LT+ R G G + V V+LL A D QRDVLALTLRG RQAA+GP + +DD+PE T+A Q E+YLELKAAAA+FA+A+DED
Sbjct: 11 LVWFRSSSGGGFAEIKGVEGPYYQPSADDLGSRICIKCTLAGTALNFGGTGSGGFLSPTNGGKGRRXXXXXGGGRSGSR----SPQRQQ-DQVSFAEGGPIVLDSPVGAEVDKLL--SADGPAVFRGLVRRDTPGETVRVRVEVGREQIRVVAEPGDAAAAADGNSPGAEPPGV---TVETAAAASVQPLDD---------------VTGGSPEAALATGSG---EKRDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLAEGRYSPGVLVTLEPARPTVLRLTVGR-GQGGEAAAAVGVRQAPTPPAVVLLLGAVDGIQRDVLALTLRGRRQAALGPGVTVDDYPEETKAHQAHEDYLELKAAAANFASAYDED 372
BLAST of mRNA_H-paniculata_contig392.10198.1 vs. uniprot
Match: D7FUZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ2_ECTSI) HSP 1 Score: 162 bits (411), Expect = 2.660e-40 Identity = 108/165 (65.45%), Postives = 125/165 (75.76%), Query Frame = 1
Query: 1645 LHLVSGELDLLRPLSRSLASRVEGKEVAEEKAKALWAEVVTLKTQLAAATESADLLGKKAGAAERESGAREERLSGLEKVVRRLGEEAEAAQSELACERSTKDEAVARASKAEREVDQAKARGAVLDNKVASLENEKLGFVADANASRARAEDLEAQMSAARLAE 2139
L LVS ELDLLRP S+SLA+R EGKE AEE A L EV TL+ QLAAA ESA+ LG +AG AE E+GA +LSGLEKVVRR E A SELA ER+ +EA ARASKAERE+DQA+AR AVLDNK+A+LE +KL +ADAN+SRARA LE + SAAR AE
Sbjct: 8 LSLVSSELDLLRPFSKSLAARAEGKEAAEEAAGNLATEVETLREQLAAAVESAERLGSRAGTAEDEAGASASKLSGLEKVVRRXXXXXEVAHSELAKERAGAEEAAARASKAERELDQARARAAVLDNKLATLEKDKLELLADANSSRARASALEEKYSAARAAE 172 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig392.10198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig392.10198.1 >prot_H-paniculata_contig392.10198.1 ID=prot_H-paniculata_contig392.10198.1|Name=mRNA_H-paniculata_contig392.10198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=771bp LSWFRSSQGGGFAEIEGVDGPFYQPSADDIGMRICIKCTLTEAALSPAVGback to top mRNA from alignment at H-paniculata_contig392:81..8036- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig392.10198.1 ID=mRNA_H-paniculata_contig392.10198.1|Name=mRNA_H-paniculata_contig392.10198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7956bp|location=Sequence derived from alignment at H-paniculata_contig392:81..8036- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig392:81..8036- >mRNA_H-paniculata_contig392.10198.1 ID=mRNA_H-paniculata_contig392.10198.1|Name=mRNA_H-paniculata_contig392.10198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4626bp|location=Sequence derived from alignment at H-paniculata_contig392:81..8036- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |