mRNA_H-paniculata_contig3919.10196.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3919.10196.1
Unique NamemRNA_H-paniculata_contig3919.10196.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3919.10196.1 vs. uniprot
Match: A0A6H5L0M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M8_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 6.250e-36
Identity = 74/97 (76.29%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:   46 MAMRGVRVGVGQQTRNTYKKGAPSNYVAGLGRGAVGFTTRSDIGPARTLPEGEPGSA-------PASGAAKDPDFGPAPVGYVAGRGRGMGDLAKAN 315
            MAMRGV    G+ TR+TY  GAPSNYVAGLGRGAVGFTTRSDIGPART P  EPG+A        +SGAAKDPDFGPAPVGYVAGRGRGMGDLAK+N
Sbjct:    1 MAMRGV----GKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPART-PLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN 92
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BLAST of mRNA_H-paniculata_contig3919.10196.1 vs. uniprot
Match: A0A7S3MCI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCI9_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.650e-20
Identity = 54/83 (65.06%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:   73 VGQQTRNTYKKGAPSNYVAGLGRGAVGFTTRSDIGPARTLPEGEPGSAPASGAAKDPDFGPAPVGYVAGRGRGMGDLAKANSE 321
            VG ++ NTY    PSNYVAG+GRGA+GFTTRSDIGPAR  P    G A       DP FGPAPVGYVAGRGRGMGDLA+   E
Sbjct:    1 VGPRSANTYTVAPPSNYVAGVGRGAMGFTTRSDIGPARPAPP--MGGAXXXXXXPDP-FGPAPVGYVAGRGRGMGDLARGQDE 80
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BLAST of mRNA_H-paniculata_contig3919.10196.1 vs. uniprot
Match: A0A7S0XAM5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XAM5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.470e-18
Identity = 53/90 (58.89%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:   70 GVGQQTRNTYKKGAPSNYVAGLGRGAVGFTTRSDIGPAR-----TLPEGEPGSAPAS-GAAKDPDFGPAPVGYVAGRGRGMGDLAKANSE 321
            GVG ++ +T+   APS YVAG+GRGAVGFTTRSDIGPAR     T P    G  P        P+FG APVGYVAGRGRGMG+LAK+  E
Sbjct:    3 GVGPKSVSTFSTTAPSYYVAGIGRGAVGFTTRSDIGPARPAFDPTNPAASTGLLPTVVNPFVTPNFGQAPVGYVAGRGRGMGELAKSQGE 92
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BLAST of mRNA_H-paniculata_contig3919.10196.1 vs. uniprot
Match: A0A7S4D952_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D952_HETAK)

HSP 1 Score: 83.2 bits (204), Expect = 1.880e-17
Identity = 56/87 (64.37%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:   64 RVGVGQQTRNTYKKGA-PSNYVAGLGRGAVGFTTRSDIGPARTLPEGEPGSAPASGAA--KDP--DFGPAPVGYVAGRGRGMGDLAK 309
            RVGVG +T NT+   A PSNYVAGLGRGAVGFTTRSDIGPART       +AP SGAA  + P  DFG A  GYVAG GRG   L K
Sbjct:    1 RVGVGARTANTFGNVAVPSNYVAGLGRGAVGFTTRSDIGPART-------AAPQSGAAPAQPPVADFGAAXXGYVAGAGRGASILGK 80
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BLAST of mRNA_H-paniculata_contig3919.10196.1 vs. uniprot
Match: A0A4D9D6Q2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6Q2_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.110e-17
Identity = 50/87 (57.47%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:   70 GVGQQTRNTYKKGAPSNYVAGLGRGAVGFTTRSDIGPART-LPEGEPGSAPASGAAKDPDFGPAPVGYVAGRGRGMGDLAKANSEGG 327
            G G Q   TY KGAP  Y AG GRGA+GFTTRSDIGPAR+ +PE               +FG  P GYVAGRGRGMGDLA++ +EGG
Sbjct:    3 GRGVQRLKTYDKGAPQGYQAGFGRGAIGFTTRSDIGPARSSVPE--------------VNFGQPPPGYVAGRGRGMGDLARSQAEGG 75
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BLAST of mRNA_H-paniculata_contig3919.10196.1 vs. uniprot
Match: A0A5D6YDN0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDN0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 9.360e-14
Identity = 47/79 (59.49%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:   70 GVGQQTRNTYKKGAPSNYVAGLGRGAVGFTTRSDIGPART--LPEG---EPGSAPASGAAKDPDFGPAPVGYVAGRGRG 291
            G+GQ+ RNTY  GAP+NYV GLGRGAVGFTTRSDIGPAR+   PEG   + G+  A+     P   PAP    AGRGRG
Sbjct:    3 GLGQRLRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARSPLTPEGLAADGGALRAAPTTAGPPGPPAPFLPGAGRGRG 81
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BLAST of mRNA_H-paniculata_contig3919.10196.1 vs. uniprot
Match: A0A6H5KUU3_9PHAE (PRP1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU3_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.210e-13
Identity = 39/62 (62.90%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:  103 KGAPSNYVAGLGRGAVGFTTRSDIGPARTL--------PEGEPGSAPASGAAKDPDFGPAPV 264
            +GAPSN+VAGLGRGAVGFT RSDIGPART         P G  G++   G +KDPDFGP PV
Sbjct:   15 EGAPSNHVAGLGRGAVGFTNRSDIGPARTTIAELGATGPRGATGAS--CGVSKDPDFGPVPV 74
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BLAST of mRNA_H-paniculata_contig3919.10196.1 vs. uniprot
Match: K3WCC0_GLOUD (PRP1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCC0_GLOUD)

HSP 1 Score: 74.3 bits (181), Expect = 3.250e-13
Identity = 44/75 (58.67%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:   70 GVGQQTRNTYKKGAPSNYVAGLGRGAVGFTTRSDIGPARTLPEGEPGSAPASGAAKDPDFGPAPVGYVAGRGRGM 294
            G+GQ+ RNTY  GAP+NYV GLGRGAVGFTTRSDIGPAR     +   AP  GA   P     P    AGRGRG+
Sbjct:    3 GLGQRQRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMAPDGSGAPVGGA---PGXXAPPYLPGAGRGRGV 74
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BLAST of mRNA_H-paniculata_contig3919.10196.1 vs. uniprot
Match: A0A7S0LXS1_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LXS1_9CRYP)

HSP 1 Score: 71.2 bits (173), Expect = 3.910e-12
Identity = 42/68 (61.76%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:  109 APSNYVAGLGRGAVGFTTRSDIGPARTLPEGEPGSAPASGAAKDP------DFGPAPVGYVAGRGRGM 294
            APSNYV GLGRGA GFTTRSDIGPAR  P  +  SA A+     P       FG APVGYV G GRGM
Sbjct:   17 APSNYVPGLGRGATGFTTRSDIGPARYQPTQDEASAAAATPQAQPANKNVVSFGQAPVGYVPGAGRGM 84
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BLAST of mRNA_H-paniculata_contig3919.10196.1 vs. uniprot
Match: A0A7S0UET4_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UET4_HEMAN)

HSP 1 Score: 70.1 bits (170), Expect = 9.230e-12
Identity = 44/85 (51.76%), Postives = 48/85 (56.47%), Query Frame = 1 
Query:   82 QTRNTYKKGAPSNYVAGLGRGAVGFTTRSDIGPAR-------TLPEGEPGSAPAS-------GAAKDPDFGPAPVGYVAGRGRGM 294
            Q R       PSNYV GLGRGA GFTTRSDIGPAR        +P+G PG+APA        G      FG AP GYV G GRG+
Sbjct:   12 QKRRALAGQVPSNYVPGLGRGATGFTTRSDIGPARYQQGGEDQVPQGMPGAAPAPQNQQVTPGERNVVSFGQAPAGYVVGAGRGV 96
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3919.10196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0M8_9PHAE6.250e-3676.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3MCI9_9STRA1.650e-2065.06Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S0XAM5_9STRA2.470e-1858.89Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S4D952_HETAK1.880e-1764.37Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9D6Q2_9STRA2.110e-1757.47Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A5D6YDN0_9STRA9.360e-1459.49Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6H5KUU3_9PHAE1.210e-1362.90PRP1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
K3WCC0_GLOUD3.250e-1358.67PRP1_N domain-containing protein n=1 Tax=Globispor... [more]
A0A7S0LXS1_9CRYP3.910e-1261.76Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S0UET4_HEMAN9.230e-1251.76Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3919contigH-paniculata_contig3919:11442..13057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue2.3e-11
Seed eggNOG ortholog65071.PYU1_T002611
KEGG koko:K12855
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003824,GO:0004553,GO:0004565,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015030,GO:0015925,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016607,GO:0016787,GO:0016798,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030312,GO:0030532,GO:0031047,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0035257,GO:0035258,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046540,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050681,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051427,GO:0060147,GO:0060148,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0065003,GO:0065007,GO:0070013,GO:0070920,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0080188,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1903798,GO:1903800,GO:1990904,GO:2000112,GO:2000628,GO:2000630,GO:2000634,GO:2000636,GO:2000637,GO:2001141
EggNOG free text desc.factor. Source PGD
EggNOG OGs1MA7B@121069,KOG0495@1,KOG0495@2759
COG Functional cat.A
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons2
Model size334
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930202.0483415-CDS-H-paniculata_contig3919:11443..116671622930202.0483415-CDS-H-paniculata_contig3919:11443..11667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3919 11444..11667 -
1691481188.3735638-CDS-H-paniculata_contig3919:11443..116671691481188.3735638-CDS-H-paniculata_contig3919:11443..11667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3919 11444..11667 -
1622930202.0840561-CDS-H-paniculata_contig3919:12951..130571622930202.0840561-CDS-H-paniculata_contig3919:12951..13057Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3919 12952..13057 -
1691481188.399593-CDS-H-paniculata_contig3919:12951..130571691481188.399593-CDS-H-paniculata_contig3919:12951..13057Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3919 12952..13057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3919.10196.1prot_H-paniculata_contig3919.10196.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3919 11444..13057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3919.10196.1

>prot_H-paniculata_contig3919.10196.1 ID=prot_H-paniculata_contig3919.10196.1|Name=mRNA_H-paniculata_contig3919.10196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
SQESCTGEQSRGDITMAMRGVRVGVGQQTRNTYKKGAPSNYVAGLGRGAV
GFTTRSDIGPARTLPEGEPGSAPASGAAKDPDFGPAPVGYVAGRGRGMGD
LAKANSEGGG
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mRNA from alignment at H-paniculata_contig3919:11442..13057-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3919.10196.1 ID=mRNA_H-paniculata_contig3919.10196.1|Name=mRNA_H-paniculata_contig3919.10196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1616bp|location=Sequence derived from alignment at H-paniculata_contig3919:11442..13057- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACAGGAGAGCTGCACAGGCGAGCAGTCCAGGGGAGATATAACCATGGC
GATGCGAGGGGTTCGAGTTGGTGTGGGCCAACAGACACGAAACACTTACA
AAAAGGGTAATCAGCTATTTGGTTTATCGGTCGTACATCTGTATTTTATA
AATCCATATGGTATAGCTGCATCAGAGGGACAACCCAATTGACCTCGCGC
TCGTGCTTGCAGCTTGACATGCTTGCTGATATAGAACTCTACGCATGGCT
CGGCATTTCGTGGCGTAGAACTCGAATAGTGCTACGATATTGATGATACG
GTTACATCTCATTTATTTGATTGGCATTTTTTAGATTGCCGTGTTGTCGT
GCAACCTGCTTGTTGCAGAAATTCGCACTCCTCAACTCAAACCGCATGTT
CAAAGGTCAATAAAGGTTGCATCGCTCGACAAACACGAATACTTGCAAAT
GGTTTTCACAAAAATCTGAAAGCATTCGCCTGAGTTTCAGAATGAGCTCG
TGTCTTCTATGTGCCCCGGACCATTCACGAGTGCTAATAGTTCTCGTAAA
TCGAACAGACAGGGATGGGTATTTGATTCCATGTGCCCACTCATTCTGAA
ACTCAGGCGAATACATTCAGTTTTTTGTGAAAACCATTTGCAAGCATCGG
CATTTGTCCGGGTGAAGGGTTGCACGGATCGCCTGTCTCGGCGTCGCTTC
CAGATGTCGAACTGAGCATCTCATGCTGTCTTCTTGATGCTATGGTCTAA
TGTAGGGTGATGCCTTATTTACGTTTACGGATTGGAGTTTCTGTTGATAT
AGGTCATACCTCACTTCGCCAATACAAACAACACTTCCTTTATATCTCAT
TTTCCACAACTCCTACCACCTGTGGTATTTTTAGACCCAAAGCTCTCTCT
GGTCAGATTTCGTCGGTTATTGATTTGTTTAAAGAAATCAAAATAACACC
ATTTGGTTAACGTCTGATAAACAGGATTAACAGAATTGCCAGTTAACCTT
CAAGTATTGTCTAGCCGGATCCGATGAAAAAAAGACTGGCAAATAATAAA
AAGAGTAATAATAAGTGTAAGAGAAATAATTGTTGTAGGCCTCACGTGTT
CGTTGTGTTACCTGTGTGACATAGCGTGTTTGAAGTCGTTCGTGAATATG
GTGATTGTTTTTGTGCGCCAGGTGCGGTGCGTAAAACATGAATTTTGTTT
CAAACCAACAAGCAACATCGTTATTTCACCTGGAAGCGATCAGCTCCATG
GATCCCTCCCGGCCCCAATTTTTGCTTGATCGGTGTAAACGCTGGTGAGG
TTCCTGTCTAGATCATGAAATAATTCACAATGTAACAACCGATGCACAAA
CCAAGCTAACGTCAACTTTACCCCCACATTCCAAACACAGGTGCCCCCTC
CAACTATGTGGCCGGTCTTGGGCGTGGTGCCGTGGGGTTCACGACTCGGT
CCGACATCGGTCCGGCTCGAACGTTACCCGAGGGCGAACCGGGGTCCGCC
CCAGCCTCAGGGGCCGCTAAGGACCCGGATTTCGGTCCGGCTCCGGTTGG
ATATGTAGCGGGTCGTGGGCGCGGTATGGGCGACTTGGCGAAGGCCAACA
GTGAGGGAGGGGGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3919:11442..13057-

>mRNA_H-paniculata_contig3919.10196.1 ID=mRNA_H-paniculata_contig3919.10196.1|Name=mRNA_H-paniculata_contig3919.10196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig3919:11442..13057- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACAGGAGAGCTGCACAGGCGAGCAGTCCAGGGGAGATATAACCATGGC
GATGCGAGGGGTTCGAGTTGGTGTGGGCCAACAGACACGAAACACTTACA
AAAAGGTCACAGGAGAGCTGCACAGGCGAGCAGTCCAGGGGAGATATAAC
CATGGCGATGCGAGGGGTTCGAGTTGGTGTGGGCCAACAGACACGAAACA
CTTACAAAAAGGGTGCCCCCTCCAACTATGTGGCCGGTCTTGGGCGTGGT
GCCGTGGGGTTCACGACTCGGTCCGACATCGGTCCGGCTCGAACGTTACC
CGAGGGCGAACCGGGGTCCGCCCCAGCCTCAGGGGCCGCTAAGGACCCGG
ATTTCGGTCCGGCTCCGGTTGGATATGTAGCGGGTCGTGGGCGCGGTATG
GGCGACTTGGCGAAGGCCAACAGTGAGGGAGGGGGCGTGCCCCCTCCAAC
TATGTGGCCGGTCTTGGGCGTGGTGCCGTGGGGTTCACGACTCGGTCCGA
CATCGGTCCGGCTCGAACGTTACCCGAGGGCGAACCGGGGTCCGCCCCAG
CCTCAGGGGCCGCTAAGGACCCGGATTTCGGTCCGGCTCCGGTTGGATAT
GTAGCGGGTCGTGGGCGCGGTATGGGCGACTTGGCGAAGGCCAACAGTGA
GGGAGGGGGC
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