mRNA_H-paniculata_contig3912.10187.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3912.10187.1
Unique NamemRNA_H-paniculata_contig3912.10187.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3912.10187.1 vs. uniprot
Match: D7G3Q6_ECTSI (Glutamate dehydrogenase 2 (NADP-dependent) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Q6_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 5.820e-41
Identity = 76/95 (80.00%), Postives = 87/95 (91.58%), Query Frame = 2 
Query:  566 MSLARSQVLKKQGLFHVPYRGTMLGAALGGGREMLKNPLAPGETMDERLEKKMDEVYEVATSVAREFNLQGNLDKGCAIAGFLRVGRAMMAHGAV 850
            +S A ++VLKK G+FHVPYRGTM+GAA+ GGRE+ +NPL PGET+D+RLEKKMDEVYEVA+SVAREFN QGNLDKGC IAGFLRVGRAMMAHGAV
Sbjct:  440 VSTAAAEVLKKNGIFHVPYRGTMIGAAISGGRELDRNPLQPGETIDDRLEKKMDEVYEVASSVAREFNQQGNLDKGCTIAGFLRVGRAMMAHGAV 534
[Close]
BLAST of mRNA_H-paniculata_contig3912.10187.1 vs. uniprot
Match: A0A1E7F994_9STRA (Aminoacid dehydrogenase-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F994_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.270e-6
Identity = 37/89 (41.57%), Postives = 50/89 (56.18%), Query Frame = 2 
Query:  584 QVLKKQGLFHVPYRGTMLGAALGGGREMLKNPLAPGETMDERLEKKMDEVYEVATSVAREFNLQGNLDKGCAIAGFLRVGRAMMAHGAV 850
            +VLKK+GL + P+  TM G A+          L  G T D+ L++++D +Y      A EFN   +L  G  IAGFLRV + MM HGAV
Sbjct:  344 KVLKKRGLLYGPHTMTMTGPAI-------TYSLGSGAT-DDDLKREVDRIYNEVKMTATEFNSHRDLYAGANIAGFLRVAKNMMLHGAV 424
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3912.10187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3Q6_ECTSI5.820e-4180.00Glutamate dehydrogenase 2 (NADP-dependent) n=2 Tax... [more]
A0A1E7F994_9STRA3.270e-641.57Aminoacid dehydrogenase-like protein n=1 Tax=Fragi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3912contigH-paniculata_contig3912:6452..8793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.2
Seed ortholog evalue4.7e-37
Seed eggNOG ortholog2880.D7G3Q6
KEGG rclassRC00006,RC02799
KEGG koko:K00262
KEGG ReactionR00248
KEGG Pathwayko00220,ko00250,ko00910,ko01100,map00220,map00250,map00910,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.glutamate dehydrogenase [NAD(P) ] activity
EggNOG OGsCOG0334@1,KOG2250@2759
Ec32 ortholog descriptionGlutamate dehydrogenase 2 (NADP-dependent)
Ec32 orthologEc-12_008040.1
EC1.4.1.4
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size872
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3912.10187.1prot_H-paniculata_contig3912.10187.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3912 7017..8774 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930200.4212763-UTR-H-paniculata_contig3912:6451..70161622930200.4212763-UTR-H-paniculata_contig3912:6451..7016Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3912 6452..7016 +
1691481187.908409-UTR-H-paniculata_contig3912:6451..70161691481187.908409-UTR-H-paniculata_contig3912:6451..7016Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3912 6452..7016 +
1622930200.4729657-UTR-H-paniculata_contig3912:8774..87931622930200.4729657-UTR-H-paniculata_contig3912:8774..8793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3912 8775..8793 +
1691481187.9364982-UTR-H-paniculata_contig3912:8774..87931691481187.9364982-UTR-H-paniculata_contig3912:8774..8793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3912 8775..8793 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930200.4417944-CDS-H-paniculata_contig3912:7016..71721622930200.4417944-CDS-H-paniculata_contig3912:7016..7172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3912 7017..7172 +
1691481187.920927-CDS-H-paniculata_contig3912:7016..71721691481187.920927-CDS-H-paniculata_contig3912:7016..7172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3912 7017..7172 +
1622930200.4612978-CDS-H-paniculata_contig3912:8642..87741622930200.4612978-CDS-H-paniculata_contig3912:8642..8774Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3912 8643..8774 +
1691481187.9288156-CDS-H-paniculata_contig3912:8642..87741691481187.9288156-CDS-H-paniculata_contig3912:8642..8774Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3912 8643..8774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3912.10187.1

>prot_H-paniculata_contig3912.10187.1 ID=prot_H-paniculata_contig3912.10187.1|Name=mRNA_H-paniculata_contig3912.10187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MSLARSQVLKKQGLFHVPYRGTMLGAALGGGREMLKNPLAPGETMDERLE
KKMDEVYEVATSVAREFNLQGNLDKGCAIAGFLRVGRAMMAHGAV*
back to top

mRNA from alignment at H-paniculata_contig3912:6452..8793+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3912.10187.1 ID=mRNA_H-paniculata_contig3912.10187.1|Name=mRNA_H-paniculata_contig3912.10187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2342bp|location=Sequence derived from alignment at H-paniculata_contig3912:6452..8793+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCAAAGAAAACTGCCATTTAGCAACACTTGCGAAAAAAATAAAGATTG
TGCAATCAAAACAGTTATATTTTAGCAAATATATTGGAAATTGAACGATG
TGTCATGTGCGATATAACAAAAAACAATTTGGATTTTGATGTTTACGATC
TTTACTGTGTTGTACTCATGTTAGTTTAGTTATTCAAATATGCATCGTTA
AATTCTATATGAAATATATGCCTCTTTTCCCCCATGTTATCCTCAGTAAC
ACCCAGCGACACAATGATTATTGTGTAGTGACTTGGACCATCGTGAAAAA
CATGTAGTCATTTTGCAGCTGATTCACGCTTTTCTCTCATGAAAACACGT
GTATGTTTGCACCCATCCGATTGTAAACTAATCAAAACCAGGTACAACAG
CAACTTTGATCTCGCACTAACGGCCAAAATCGACTTGATGAGAAGGCTAT
GCCTATAACTAGCCAGGTACTCCGCATATGTTTCGGTACAGTACAAGACT
GATATTTGTCATTACAGGATCAGCGTCGCAAAATCTGCTCTGTCCAGCAT
CACGACCATTTGTATATGTCTCTCGCGAGATCGCAGGTACTCAAGAAGCA
GGGGCTGTTTCACGTACCGTACCGTGGCACCATGTTGGGAGCGGCTCTTG
GAGGGGGGCGCGAGATGCTTAAGAACCCTCTTGCCCCTGGGGAGACGATG
GACGAGCGCCTCGAAAAGAAGGTAAGTCACTCTCTGTCGCAGACTGCGTG
GGATGCAACAAGAGCCGATGAGCGAAATAGCTAGCCGTCATACTGTATGT
TTTGTTAACCGTTCGAGAACCGGAGCTCGAAACTACCCAAATGTTGATGC
CACTAACGACCAGCAGTATAAAATGAATAAATCAAGAGGACGTTTGACAA
GCTCTCTTGACAGGCGATGAATGTATCTCGGGTCCGAACGGAGAGTGTGT
TTTTCCCCGGTTTGGCTAGTGCTCTGTTGGATTCAAAGCAGAGGAAGGGC
AGGCAAACGCCAAGGTCGTTACGTACCGACCACATAATACACACGGAGTA
GACAGCTGATGAGGTCAGTGGTTGCACCATTTTACTTGTCAATGATGTAG
TTTCATGTTTGTTTAACTTGGTGGCTATTGTGAAACACAATGGCAGCTGT
TTCCAGAATTCTCGCGGATAGGTTGCACAACTTTAGTAACACTGAGCAGC
ATGTCAGCGGGTGTTATCAACTGTGTTGCTGATATTTTCAATCCATCGGT
CGAAAGGTATAATCGGCTTTACATTTCACTAACTTACTGGGTACGCAGGG
GGTGGTTTACTGTAGTTTGTTTGATGAGTTTGTCGTCATGATGAGTGCGC
GGTGTAGACAGAGTTGAGGGACTGAATTTTAGTCGATATTTATTATCGGT
CAGCTTATTGGTTGGCTAAGGTTTGTATACGCCCGTGGCATTATCGGTGG
TCAGGATAATGGTAATGCTCGGAAACGTAGCAGCAGCACCCCAAGTTTCG
TTGTCGTAAAAAATGGATCTAATCTGTGGCGCTTCATTGTTTGTGATGGT
CGTGGGCTTCGATGCCGTCGACACCACACCTACAGCCGCTCCCCTCTGCC
TTTTTGTAAGGTACACACATGGATTGAAAACCCTGCTCGATCTGATCACC
TCCACAATTTTTCGGTCATGAAATATGGTGATCCAGGACCATAGTGCACC
ACCCTTGACTGTAATTGTTGTTGATACGGTGGTGCATGCTTGGAACGCAT
TTCCATACTGACTTATTTCTTTTGCTACAGTATCGGCCCGATCGTAATAA
ATTAAGCCATACAAAACTGAGGCTCACTTTTTTGCGATCCATCAGAAATC
TGGCCTAAGAAATGGAGCTCAAATTGTGAGCTCACAAAATTCCTGTATTT
AAGTGACAAAGGGTACTAGTTGTGATTCTCGTCAAAATAAGGTTTGAAGC
CTCACTCAAAATAGGAATTTCTTTTCATCCGGCGGCTCGTACTCTATACT
GGTAGGACGGGTGCGATTACAGCAGCACTTTCTGCCTTTTGTTGCCGTGC
TGCATCCGTCATCTATGATAAAAGCCTATGAATCGCACAAGAAGCCCCGC
AACGCTCGCAACGGTTCTGTTTTGTGATCATGTGATGTGGTGCTTTTTGG
CCGCGGTGTCTCTCTTCCCAATCCGAATTTGATGGTTTCAGATGGACGAG
GTGTACGAGGTGGCCACGTCCGTCGCTCGAGAATTCAATCTACAAGGCAA
TCTGGACAAGGGATGCGCCATTGCCGGGTTCTTGCGAGTGGGGCGGGCCA
TGATGGCTCACGGTGCTGTGTGATGGGAGCGGCTCCAAATTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3912:6452..8793+

>mRNA_H-paniculata_contig3912.10187.1 ID=mRNA_H-paniculata_contig3912.10187.1|Name=mRNA_H-paniculata_contig3912.10187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig3912:6452..8793+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTCTCGCGAGATCGCAGGTACTCAAGAAGCAGGGGCTGTTTCACGT
ACCGTACCGTGGCACCATGTTGGGAGCGGCTCTTGGAGGGGGGCGCGAGA
TGCTTAAGAACCCTCTTGCCCCTGGGGAGACGATGGACGAGCGCCTCGAA
AAGAAGATGTCTCTCGCGAGATCGCAGGTACTCAAGAAGCAGGGGCTGTT
TCACGTACCGTACCGTGGCACCATGTTGGGAGCGGCTCTTGGAGGGGGGC
GCGAGATGCTTAAGAACCCTCTTGCCCCTGGGGAGACGATGGACGAGCGC
CTCGAAAAGAAGATGGACGAGGTGTACGAGGTGGCCACGTCCGTCGCTCG
AGAATTCAATCTACAAGGCAATCTGGACAAGGGATGCGCCATTGCCGGGT
TCTTGCGAGTGGGGCGGGCCATGATGGCTCACGGTGCTGTGTGAATGGAC
GAGGTGTACGAGGTGGCCACGTCCGTCGCTCGAGAATTCAATCTACAAGG
CAATCTGGACAAGGGATGCGCCATTGCCGGGTTCTTGCGAGTGGGGCGGG
CCATGATGGCTCACGGTGCTGTGTGA
back to top