mRNA_H-paniculata_contig391.10180.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig391.10180.1
Unique NamemRNA_H-paniculata_contig391.10180.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig391.10180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig391contigH-paniculata_contig391:5952..6284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size333
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930198.5285175-CDS-H-paniculata_contig391:5951..62841622930198.5285175-CDS-H-paniculata_contig391:5951..6284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig391 5952..6284 +
1691481187.5718257-CDS-H-paniculata_contig391:5951..62841691481187.5718257-CDS-H-paniculata_contig391:5951..6284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig391 5952..6284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig391.10180.1prot_H-paniculata_contig391.10180.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig391 5952..6284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig391.10180.1

>prot_H-paniculata_contig391.10180.1 ID=prot_H-paniculata_contig391.10180.1|Name=mRNA_H-paniculata_contig391.10180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MVSQQAGSSMSPQQLQSAPVKTPPEPSGTYSSSIPTRYAQLPVAASEGAE
VGSNVGEGDKAHVEHLDYHLRGCLELPVADVWGVSVDILLDSGPCVTALS
EDILHRLQQQ*
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mRNA from alignment at H-paniculata_contig391:5952..6284+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig391.10180.1 ID=mRNA_H-paniculata_contig391.10180.1|Name=mRNA_H-paniculata_contig391.10180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at H-paniculata_contig391:5952..6284+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTTCGCAGCAGGCGGGATCGAGCATGTCGCCCCAACAACTGCAATC
AGCGCCTGTTAAGACGCCACCGGAGCCTAGCGGCACCTACAGCTCTAGTA
TTCCCACCCGCTACGCACAGCTACCAGTAGCTGCGAGTGAAGGGGCCGAG
GTGGGGAGCAATGTGGGCGAAGGCGATAAAGCACACGTTGAACACCTGGA
TTACCATCTCCGAGGGTGTTTGGAGTTACCGGTAGCGGATGTCTGGGGAG
TGAGCGTTGATATACTGCTGGACTCTGGGCCTTGTGTGACGGCTTTATCT
GAAGACATTCTTCACCGGCTGCAGCAGCAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig391:5952..6284+

>mRNA_H-paniculata_contig391.10180.1 ID=mRNA_H-paniculata_contig391.10180.1|Name=mRNA_H-paniculata_contig391.10180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig391:5952..6284+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTTCGCAGCAGGCGGGATCGAGCATGTCGCCCCAACAACTGCAATC
AGCGCCTGTTAAGACGCCACCGGAGCCTAGCGGCACCTACAGCTCTAGTA
TTCCCACCCGCTACGCACAGCTACCAGTAGCTGCGAGTGAAGGGGCCGAG
GTGGGGAGCAATGTGGGCGAAGGCGATAAAGCACACGTTGAACACCTGGA
TTACCATCTCCGAGGGTGTTTGGAGTTACCGGTAGCGGATGTCTGGGGAG
TGAGCGTTGATATACTGCTGGACTCTGGGCCTTGTGTGACGGCTTTATCT
GAAGACATTCTTCACCGGCTGCAGCAGCAATGAATGGTTTCGCAGCAGGC
GGGATCGAGCATGTCGCCCCAACAACTGCAATCAGCGCCTGTTAAGACGC
CACCGGAGCCTAGCGGCACCTACAGCTCTAGTATTCCCACCCGCTACGCA
CAGCTACCAGTAGCTGCGAGTGAAGGGGCCGAGGTGGGGAGCAATGTGGG
CGAAGGCGATAAAGCACACGTTGAACACCTGGATTACCATCTCCGAGGGT
GTTTGGAGTTACCGGTAGCGGATGTCTGGGGAGTGAGCGTTGATATACTG
CTGGACTCTGGGCCTTGTGTGACGGCTTTATCTGAAGACATTCTTCACCG
GCTGCAGCAGCAATGA
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