prot_H-paniculata_contig3909.10179.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3909.10179.1
Unique Nameprot_H-paniculata_contig3909.10179.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length275
Homology
BLAST of mRNA_H-paniculata_contig3909.10179.1 vs. uniprot
Match: D8LDJ3_ECTSI (DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDJ3_ECTSI)

HSP 1 Score: 285 bits (728), Expect = 2.170e-86
Identity = 177/246 (71.95%), Postives = 191/246 (77.64%), Query Frame = 0
Query:    3 RSRSRGGLDEDEDAYLVPSDWEDDADDDDWGVGGGTAAAKRARERLGKLNESKAAKSQGSXXXXXXXXXXXXXXXXXXXX-----------------AVLAHLKDCQDMQLKTQHGDRPIWVLPDGHIYLEASSLYYHQAYDFLVAIAEPVSRPEFVHEYKLTPYSLYAAVAVSIGTESIVRVLNRLSKTAVPASVERFIRDCTLSFGKAKLVLKHNKHYIESPYPEVLRELLKNAVVSQARLRED 231
            R R  GG DEDEDAYLVPSDWED     DW  GG   + +RAR+    L  S+ AK    XXXXXXXXXXXXXXXXXXXX                 ++L +LKDC+DMQLK QH DRPIWVLPDGHIYLEASS YYHQAYDFLVAIAEPVSRPEFVHEYKLTPYSLYAAVAVSI T+SIV+VLNRLSKT VP SVE FIR CT+S+GKAKLVLKHNKHYIESP+PEVLRELLKN  VSQARL E+
Sbjct:   16 RHRGGGGFDEDEDAYLVPSDWEDXXXXXDWNAGG--TSGRRARDLQKNLTASRGAKGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNDSMLMNLKDCRDMQLKPQHTDRPIWVLPDGHIYLEASSPYYHQAYDFLVAIAEPVSRPEFVHEYKLTPYSLYAAVAVSIDTDSIVKVLNRLSKTPVPDSVETFIRACTVSYGKAKLVLKHNKHYIESPFPEVLRELLKNPTVSQARLGEE 259          
BLAST of mRNA_H-paniculata_contig3909.10179.1 vs. uniprot
Match: A0A7S2XJM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJM0_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.520e-57
Identity = 96/139 (69.06%), Postives = 111/139 (79.86%), Query Frame = 0
Query:   90 DCQDMQLKTQHGDRPIWVLPDGHIYLEASSLYYHQAYDFLVAIAEPVSRPEFVHEYKLTPYSLYAAVAVSIGTESIVRVLNRLSKTAVPASVERFIRDCTLSFGKAKLVLKHNKHYIESPYPEVLRELLKNAVVSQARL 228
            D  DM LK  H  RP WV PDG IYLEA    Y  AYDFLVAIAEPV+RPEFVHEYKLTPYSLYAAVA +I TESI+RVL RLSKTAVP +V+ F+RDCT  +GKAKLVLK NK Y+ES +P VL+ELL++ ++SQAR+
Sbjct:   52 DFSDMPLKPDHSKRPCWVCPDGTIYLEAFHELYASAYDFLVAIAEPVARPEFVHEYKLTPYSLYAAVATNIDTESILRVLQRLSKTAVPTTVQTFVRDCTKRYGKAKLVLKSNKFYVESDHPHVLKELLRDPLISQARV 190          
BLAST of mRNA_H-paniculata_contig3909.10179.1 vs. uniprot
Match: A0A7S2K8G6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2K8G6_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.070e-53
Identity = 93/142 (65.49%), Postives = 112/142 (78.87%), Query Frame = 0
Query:   90 DCQDMQLKTQHGDRPIWVLPDGHIYLEASSLYYHQAYDFLVAIAEPVSRPEFVHEYKLTPYSLYAAVAVSIGTESIVRVLNRLSKTAVPASVERFIRDCTLSFGKAKLVLKHNKHYIESPYPEVLRELLKNAVVSQARLRED 231
            D   ++LK  H  RP W  PDG IYLEA   +Y +AYDFLVAI+EPV+RPE+VHEYKLTPYSLYAAVA +I TESIVRVLNR SK  +P  V +FIR+CT  +GKAKLVLKHNK Y+ES YP VLRELL++ ++SQAR+ E+
Sbjct:   74 DFSSLKLKPDHISRPCWTCPDGTIYLEAFHEFYTKAYDFLVAISEPVARPEYVHEYKLTPYSLYAAVATNIDTESIVRVLNRFSKNEMPVGVAQFIRECTKRYGKAKLVLKHNKFYVESDYPAVLRELLRDDLISQARVAEE 215          
BLAST of mRNA_H-paniculata_contig3909.10179.1 vs. uniprot
Match: A0A1E7FWQ3_9STRA (DNA helicase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWQ3_9STRA)

HSP 1 Score: 193 bits (490), Expect = 2.880e-53
Identity = 96/147 (65.31%), Postives = 115/147 (78.23%), Query Frame = 0
Query:   90 DCQDMQLKTQHGDRPIWVLPDGHIYLEASSLYYHQAYDFLVAIAEPVSRPEFVHEYKLTPYSLYAAVAVSIGTESIVRVLNRLSKTAVPASVERFIRDCTLSFGKAKLVLKHNKHYIESPYPEVLRELLKNAVVSQARLREDEEEEV 236
            D  D+ LK  H  RP WV PDG+IYLEA    Y +AYDFLVAIAEPV+RPEFVH+YKLTPYSLYAAVA +I TESI+ VL RLSK A+P  V++F+RDCT  +GKAKLVLKHNK Y+ES +P VLRELL++  ++QAR+ ED E  V
Sbjct:   16 DFSDLALKPDHIQRPCWVCPDGNIYLEAFHDLYEKAYDFLVAIAEPVARPEFVHQYKLTPYSLYAAVATNIETESIITVLQRLSKNALPKEVKQFVRDCTSKYGKAKLVLKHNKFYVESEFPMVLRELLRDQTIAQARIHEDVEANV 162          
BLAST of mRNA_H-paniculata_contig3909.10179.1 vs. uniprot
Match: A0A0A9WYH8_LYGHE (DNA excision repair protein haywire n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WYH8_LYGHE)

HSP 1 Score: 182 bits (461), Expect = 5.900e-53
Identity = 85/140 (60.71%), Postives = 111/140 (79.29%), Query Frame = 0
Query:   94 MQLKTQHGDRPIWVLPDGHIYLEASSLYYHQAYDFLVAIAEPVSRPEFVHEYKLTPYSLYAAVAVSIGTESIVRVLNRLSKTAVPASVERFIRDCTLSFGKAKLVLKHNKHYIESPYPEVLRELLKNAVVSQARLREDEE 233
            +Q+KT H  RP+WV P+GHI+LE+ S  Y  A+DFL+AIAEPV RPE +HEYKLT YSLYAAV+V + T+ I+  L RLSKT++P  +  FI+ CTLS+GK KLVLKHNK++IESP+PEVL++LLK+ V+ + RLR D E
Sbjct:   73 LQMKTDHSTRPLWVAPNGHIFLESFSPLYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETDDIIEYLRRLSKTSMPEGIVEFIKLCTLSYGKVKLVLKHNKYFIESPFPEVLQKLLKDPVIQECRLRRDAE 212          
BLAST of mRNA_H-paniculata_contig3909.10179.1 vs. uniprot
Match: A0A067BZ91_SAPPC (DNA helicase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BZ91_SAPPC)

HSP 1 Score: 192 bits (487), Expect = 2.310e-52
Identity = 94/142 (66.20%), Postives = 113/142 (79.58%), Query Frame = 0
Query:   90 DCQDMQLKTQHGDRPIWVLPDGHIYLEASSLYYHQAYDFLVAIAEPVSRPEFVHEYKLTPYSLYAAVAVSIGTESIVRVLNRLSKTAVPASVERFIRDCTLSFGKAKLVLKHNKHYIESPYPEVLRELLKNAVVSQARLRED 231
            D   ++LK  H  RP+WV P+G I+LEA S  Y QAYDFLVAIAEPVSRPEFVHEYKLTPYSLYAAV+VSI T+SI++VL RLSK  +P  +  FIRDCTLS+GKAKLVL HN+ Y+ES YP+VLR LL+N  +  AR++ED
Sbjct:   77 DFSALELKKDHESRPVWVCPNGRIFLEAFSPIYKQAYDFLVAIAEPVSRPEFVHEYKLTPYSLYAAVSVSIETDSIIKVLERLSKNVIPTGITTFIRDCTLSYGKAKLVLHHNEFYVESLYPQVLRTLLENEQIRLARVKED 218          
BLAST of mRNA_H-paniculata_contig3909.10179.1 vs. uniprot
Match: A0A448Z8T1_9STRA (DNA helicase n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448Z8T1_9STRA)

HSP 1 Score: 191 bits (484), Expect = 5.270e-52
Identity = 93/143 (65.03%), Postives = 113/143 (79.02%), Query Frame = 0
Query:   90 DCQDMQLKTQHGDRPIWVLPDGHIYLEASSLYYHQAYDFLVAIAEPVSRPEFVHEYKLTPYSLYAAVAVSIGTESIVRVLNRLSKTAVPASVERFIRDCTLSFGKAKLVLKHNKHYIESPYPEVLRELLKNAVVSQARLREDE 232
            D  DM LK  H  RP W  PDG+IYLEA    Y QAYDFLVAI+EPV+RPEFVH+YKLTPYSLYAAVA +I TESI+ VL RLSK A+P  V++F+RDCT  +GKAKLVLKHNK Y+ES +P VLRELL++ V++QAR+ + +
Sbjct:   52 DFSDMALKPDHVQRPCWTCPDGNIYLEAFHDLYVQAYDFLVAISEPVARPEFVHQYKLTPYSLYAAVATNIETESIINVLERLSKNALPKEVKKFVRDCTSKYGKAKLVLKHNKFYVESEFPMVLRELLRDPVIAQARIHDQQ 194          
BLAST of mRNA_H-paniculata_contig3909.10179.1 vs. uniprot
Match: A0A6A5ACU3_9STRA (Helicase_C_3 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ACU3_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.830e-51
Identity = 88/143 (61.54%), Postives = 114/143 (79.72%), Query Frame = 0
Query:   89 KDCQDMQLKTQHGDRPIWVLPDGHIYLEASSLYYHQAYDFLVAIAEPVSRPEFVHEYKLTPYSLYAAVAVSIGTESIVRVLNRLSKTAVPASVERFIRDCTLSFGKAKLVLKHNKHYIESPYPEVLRELLKNAVVSQARLRED 231
            +D   +++K  H  RP+WV P+G I+LEA S  Y QAYDFLVAI+EPVSRPEF+HEYKLTPYSLYAAV+VSI TESIV+VL RLSK  +P  + +FI++CT S+GKAKLVL HN++Y+ES YP+VL+ LL+   +  AR++ED
Sbjct:   70 QDFSSLKMKNDHASRPVWVCPNGRIFLEAFSPLYKQAYDFLVAISEPVSRPEFLHEYKLTPYSLYAAVSVSIETESIVKVLERLSKNHLPLVIVQFIKECTASYGKAKLVLHHNEYYVESLYPKVLKRLLEEESIRLARVKED 212          
BLAST of mRNA_H-paniculata_contig3909.10179.1 vs. uniprot
Match: A0A482XF11_LAOST (Helicase_C_3 domain-containing protein n=1 Tax=Laodelphax striatellus TaxID=195883 RepID=A0A482XF11_LAOST)

HSP 1 Score: 180 bits (457), Expect = 2.050e-51
Identity = 86/145 (59.31%), Postives = 111/145 (76.55%), Query Frame = 0
Query:   94 MQLKTQHGDRPIWVLPDGHIYLEASSLYYHQAYDFLVAIAEPVSRPEFVHEYKLTPYSLYAAVAVSIGTESIVRVLNRLSKTAVPASVERFIRDCTLSFGKAKLVLKHNKHYIESPYPEVLRELLKNAVVSQARLREDEEEEVKP 238
            M LK  H  RP+WV P+GHI+LE+ S  Y  A+DFL+AI+EPV RPEF+HEYKLT YSLYAAV+V + T  I+  L RLSKT+VP  +  FIR CTLS+GK KLVLKHNK+++ESP+P+VL++LLK+ VV + RLR   ++E  P
Sbjct:   67 MALKPDHSSRPLWVAPNGHIFLESFSPVYKHAHDFLIAISEPVCRPEFIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSVPDGIVEFIRLCTLSYGKVKLVLKHNKYFVESPFPDVLQKLLKDPVVQECRLRRTVDKEAAP 211          
BLAST of mRNA_H-paniculata_contig3909.10179.1 vs. uniprot
Match: A0A835Z0I6_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I6_9STRA)

HSP 1 Score: 188 bits (478), Expect = 2.570e-51
Identity = 95/142 (66.90%), Postives = 113/142 (79.58%), Query Frame = 0
Query:   94 MQLKTQHGDRPIWVLPDGHIYLEASSLYYHQAYDFLVAIAEPVSRPEFVHEYKLTPYSLYAAVAVSIGTESIVRVLNRLSKTAVPASVERFIRDCTLSFGKAKLVLKHNKHYIESPYPEVLRELLKNAVVSQARLREDEEEE 235
            M LK  H  RP+WV PDGHI+LEA +  Y QAYDFLVAIAEPV+RPEFVHEY+LTP+SLYAAVAV+I TESI+RVLNRLSK  VP  V  FIRD T   GKAKLVLK  ++Y+ESP+P+VLR LLK+  +  AR++ D+EEE
Sbjct:    1 MALKRDHEKRPLWVCPDGHIFLEAHTPLYTQAYDFLVAIAEPVARPEFVHEYRLTPFSLYAAVAVAIDTESIIRVLNRLSKVEVPEGVNTFIRDHTQRCGKAKLVLKRGRYYVESPHPDVLRALLKDREIETARIKGDDEEE 142          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3909.10179.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDJ3_ECTSI2.170e-8671.95DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A7S2XJM0_9STRA1.520e-5769.06Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S2K8G6_9STRA2.070e-5365.49Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A1E7FWQ3_9STRA2.880e-5365.31DNA helicase n=1 Tax=Fragilariopsis cylindrus CCMP... [more]
A0A0A9WYH8_LYGHE5.900e-5360.71DNA excision repair protein haywire n=1 Tax=Lygus ... [more]
A0A067BZ91_SAPPC2.310e-5266.20DNA helicase n=3 Tax=Saprolegniaceae TaxID=4764 Re... [more]
A0A448Z8T1_9STRA5.270e-5265.03DNA helicase n=2 Tax=Pseudo-nitzschia TaxID=41953 ... [more]
A0A6A5ACU3_9STRA1.830e-5161.54Helicase_C_3 domain-containing protein n=1 Tax=Aph... [more]
A0A482XF11_LAOST2.050e-5159.31Helicase_C_3 domain-containing protein n=1 Tax=Lao... [more]
A0A835Z0I6_9STRA2.570e-5166.90DNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 214..234
NoneNo IPR availablePANTHERPTHR11274:SF0GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH HELICASE SUBUNIT XPBcoord: 76..251
NoneNo IPR availablePANTHERPTHR11274RAD25/XP-B DNA REPAIR HELICASEcoord: 76..251
IPR032830Helicase XPB/Ssl2, N-terminal domainPFAMPF13625Helicase_C_3coord: 105..230
e-value: 2.4E-35
score: 121.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3909contigH-paniculata_contig3909:1656..13139 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3909.10179.1mRNA_H-paniculata_contig3909.10179.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3909 1656..13139 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3909.10179.1 ID=prot_H-paniculata_contig3909.10179.1|Name=mRNA_H-paniculata_contig3909.10179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=275bp
MLRSRSRGGLDEDEDAYLVPSDWEDDADDDDWGVGGGTAAAKRARERLGK
LNESKAAKSQGSKKRRQEQEQSRNDDDDDDDDAVLAHLKDCQDMQLKTQH
GDRPIWVLPDGHIYLEASSLYYHQAYDFLVAIAEPVSRPEFVHEYKLTPY
SLYAAVAVSIGTESIVRVLNRLSKTAVPASVERFIRDCTLSFGKAKLVLK
HNKHYIESPYPEVLRELLKNAVVSQARLREDEEEEVKPRAGQSASAATAA
AAAAAAAVTAARGGRPGVASKTTPG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032830XPB/Ssl2_N