mRNA_H-paniculata_contig3907.10176.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3907.10176.1
Unique NamemRNA_H-paniculata_contig3907.10176.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.070e-20
Identity = 54/130 (41.54%), Postives = 76/130 (58.46%), Query Frame = 2
Query:    2 FDDIGQLSLISESTAQSAFHTFCKRFADDLFHG*IKILTGDALAVTMKAHDEVGFTGAEGSTDVTHIAWGCTPASYIHLYTGKEGFPPTLACEATGEVDGLQ-ALR*GRRGTGGEGPHLMFDRGYHRWRS 388
            FDD+ QLS +S+S AQ  FH FC+ FA ++F   I + TG  L   M    ++G+TGA GSTDVTHI W   P +    +TGKEGFP T+A + T + DG   A+  G  G   +   + +D G ++ R+
Sbjct:   50 FDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFP-TIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRT 178          
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.090e-20
Identity = 53/130 (40.77%), Postives = 74/130 (56.92%), Query Frame = 2
Query:    2 FDDIGQLSLISESTAQSAFHTFCKRFADDLFHG*IKILTGDALAVTMKAHDEVGFTGAEGSTDVTHIAWGCTPASYIHLYTGKEGFPPTLACEATGEVDG-LQALR*GRRGTGGEGPHLMFDRGYHRWRS 388
            F DI  +S IS  T  S FH FCK FA +L+   + + TG+ L   M+ +D +GF GA GSTDVTHI WG  P +   +YTGKEG  PT+A + T +  G + A+  G  G   +   + +D+   R R+
Sbjct:   97 FADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEG-KPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRT 225          
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.390e-20
Identity = 53/130 (40.77%), Postives = 74/130 (56.92%), Query Frame = 2
Query:    2 FDDIGQLSLISESTAQSAFHTFCKRFADDLFHG*IKILTGDALAVTMKAHDEVGFTGAEGSTDVTHIAWGCTPASYIHLYTGKEGFPPTLACEATGEVDG-LQALR*GRRGTGGEGPHLMFDRGYHRWRS 388
            F DI  +S IS  T  S FH FCK FA +L+   + + TG+ L   M+ +D +GF GA GSTDVTHI WG  P +   +YTGKEG  PT+A + T +  G + A+  G  G   +   + +D+   R R+
Sbjct:  188 FADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEG-KPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRT 316          
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.310e-17
Identity = 44/95 (46.32%), Postives = 58/95 (61.05%), Query Frame = 2
Query:    2 FDDIGQLSLISESTAQSAFHTFCKRFADDLFHG*IKILTGDALAVTMKAHDEVGFTGAEGSTDVTHIAWGCTPASYIHLYTGKEGFPPTLACEAT 286
            F DI  +S IS  TA + FH F + FA +++   I + TGD     M  +D +GF+GA GSTDVTHI WG  P +    YTGKEG+P T+A + T
Sbjct:  172 FADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYP-TVAYQVT 265          
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 7.090e-17
Identity = 53/130 (40.77%), Postives = 73/130 (56.15%), Query Frame = 2
Query:    2 FDDIGQLSLISESTAQSAFHTFCKRFADDLFHG*IKILTGDALAVTMKAHDEVGFTGAEGSTDVTHIAWGCTPASYIHLYTGKEGFPPTLACEATGEVDGLQ-ALR*GRRGTGGEGPHLMFDRGYHRWRS 388
            FDD+ QLS +SES AQ+ FH FC+  A ++F   I + TG  L   M    ++G TGA GSTDVTHI     P +    +TGKEGFP T+A E T +  G   A+  G  G   +   + +D G ++ R+
Sbjct:  146 FDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFP-TIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRT 274          
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.030e-16
Identity = 45/97 (46.39%), Postives = 59/97 (60.82%), Query Frame = 2
Query:    2 FDDIGQLSLISESTAQSAFHTFCKRFADDLFHG*IKILTGDA--LAVTMKAHDEVGFTGAEGSTDVTHIAWGCTPASYIHLYTGKEGFPPTLACEAT 286
            F  I Q+S +S  T Q  FH FC+ FA +++   I + T ++  L   MK +D +GFTGA GS DVTHIAW   P +    YTGKEGFP T+A + T
Sbjct:   99 FASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFP-TIAYQVT 194          
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Match: A0A6H5KEF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF0_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.490e-15
Identity = 49/130 (37.69%), Postives = 70/130 (53.85%), Query Frame = 2
Query:    2 FDDIGQLSLISESTAQSAFHTFCKRFADDLFHG*IKILTGDALAVTMKAHDEVGFTGAEGSTDVTHIAWGCTPASYIHLYTGKEGFPPTLACEATGEVDGLQ-ALR*GRRGTGGEGPHLMFDRGYHRWRS 388
            FDD+ QLS +S+S AQ+ FH FC+ FA ++                M    ++G+TGA GSTDVTHI W   P +    +TGKEGFP T+A E T +  G   A+  G  G   +   + +D G ++ R+
Sbjct:   94 FDDVEQLSKMSKSMAQATFHKFCRHFAAEI----------------MGIFHQLGYTGACGSTDVTHIDWNMCPFTLGRSFTGKEGFP-TIAYEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRT 206          
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.170e-14
Identity = 44/93 (47.31%), Postives = 53/93 (56.99%), Query Frame = 2
Query:    2 FDDIGQLSLISESTAQSAFHTFCKRFADDLFHG*IKILTGDALAVTMKAHDEVGFTGAEGSTDVTHIAWGCTPASYIHLYTGKEGFPPTLACE 280
            FDDI QLS ISE T Q  FH F +RFA + F   +K   G  L   ++ + +VGF G  GS D THI +   P S  H Y GKEGF  T+A E
Sbjct:  146 FDDIPQLSFISEQTIQRVFHEFTQRFALEFFPKHVKFPQGAHLEEILREYKDVGFGGCAGSMDCTHIHYQSAPNSGRHSYVGKEGFA-TVAFE 237          
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.340e-14
Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = 2
Query:    2 FDDIGQLSLISESTAQSAFHTFCKRFADDLFHG*IKILT--GDALAVTMKAHDEVGFTGAEGSTDVTHIAWGCTPASYIHLYTGKEGFP 262
            F  I Q+S +S +T Q+ FH FCK FA +++   I + +     L   MK +D +GF+GA GS DVTHI W   P +    YTGKEG P
Sbjct:  139 FASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVP 227          
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.800e-13
Identity = 41/97 (42.27%), Postives = 56/97 (57.73%), Query Frame = 2
Query:    2 FDDIGQLSLISESTAQSAFHTFCKRFADDLFHG*IKILT--GDALAVTMKAHDEVGFTGAEGSTDVTHIAWGCTPASYIHLYTGKEGFPPTLACEAT 286
            F  I Q+S +S +T Q+ FH FCK FA +++   I + +     L   MK +D +GF+GA GS DVTHI W   P +    YTGKEG P T+  + T
Sbjct:  139 FASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVP-TIGYQVT 234          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5K796_9PHAE1.070e-2041.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE2.090e-2040.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE3.390e-2040.77Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE3.310e-1746.32Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI7_9PHAE7.090e-1740.77DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KNX4_9PHAE1.030e-1646.39DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KEF0_9PHAE1.490e-1537.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHC3_9PHAE1.170e-1447.31DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5L642_9PHAE3.340e-1443.82Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FPI7_ECTSI1.800e-1342.27Transposon protein, putative, Pong sub-class n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3907contigH-paniculata_contig3907:5482..6629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size437
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3907.10176.1prot_H-paniculata_contig3907.10176.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3907 5527..6477 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930197.680311-UTR-H-paniculata_contig3907:5481..55261622930197.680311-UTR-H-paniculata_contig3907:5481..5526Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3907 5482..5526 -
1691481187.3290806-UTR-H-paniculata_contig3907:5481..55261691481187.3290806-UTR-H-paniculata_contig3907:5481..5526Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3907 5482..5526 -
1622930197.7299616-UTR-H-paniculata_contig3907:6477..66291622930197.7299616-UTR-H-paniculata_contig3907:6477..6629Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3907 6478..6629 -
1691481187.3701804-UTR-H-paniculata_contig3907:6477..66291691481187.3701804-UTR-H-paniculata_contig3907:6477..6629Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3907 6478..6629 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930197.691289-CDS-H-paniculata_contig3907:5526..55391622930197.691289-CDS-H-paniculata_contig3907:5526..5539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3907 5527..5539 -
1691481187.3393424-CDS-H-paniculata_contig3907:5526..55391691481187.3393424-CDS-H-paniculata_contig3907:5526..5539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3907 5527..5539 -
1622930197.7033596-CDS-H-paniculata_contig3907:6145..62381622930197.7033596-CDS-H-paniculata_contig3907:6145..6238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3907 6146..6238 -
1691481187.3514044-CDS-H-paniculata_contig3907:6145..62381691481187.3514044-CDS-H-paniculata_contig3907:6145..6238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3907 6146..6238 -
1622930197.7183912-CDS-H-paniculata_contig3907:6343..64771622930197.7183912-CDS-H-paniculata_contig3907:6343..6477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3907 6344..6477 -
1691481187.360047-CDS-H-paniculata_contig3907:6343..64771691481187.360047-CDS-H-paniculata_contig3907:6343..6477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3907 6344..6477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3907.10176.1

>prot_H-paniculata_contig3907.10176.1 ID=prot_H-paniculata_contig3907.10176.1|Name=mRNA_H-paniculata_contig3907.10176.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MRWASLGQKARLMSPTSHGAAPRHHISISTRARKDSPRLSHARQRVRSMA
YKLCDKDGVEQVEKGLTSCSTEDITGGGV*
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mRNA from alignment at H-paniculata_contig3907:5482..6629-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3907.10176.1 ID=mRNA_H-paniculata_contig3907.10176.1|Name=mRNA_H-paniculata_contig3907.10176.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1148bp|location=Sequence derived from alignment at H-paniculata_contig3907:5482..6629- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCGATGACATCGGCCAGCTCTCCTTGATAAGCGAGTCGACTGCCCAAA GTGCGTTCCACACATTTTGCAAGCGTTTCGCTGATGATCTTTTTCATGGG TGAATTAAAATCCTTACCGGGGATGCCCTCGCAGTCACAATGAAGGCGCA CGATGAGGTGGGCTTCACTGGGGCAGAAGGCTCGACTGATGTCACCCACA TCGCATGGGGCTGCACCCCGGCATCATATATCCATCTCTACACGGGCAAG GAAGGATTCCCCCCGACTCTCGCATGCGAGGCAACGGTAGACCGCTCCGG ACGGGTATTTGGAATGATGAAGGGAATGGCCGCAGCAGTGAACGATAAAT CCATCGTTCGTTTCGACAAGACAGTTCAAGCGGTCAGGGAGGGTGAGGTC GATGGCTTACAAGCTCTGCGATAAGGACGGCGTGGAACAGGTGGAGAAGG GCCTCACCTCATGTTCGACAGAGGATATCACCGGGTGAGTCACCTGCTAT TGTTTGATGGCCATTGCTCCACCACCCTACGGAACTGCGTTGTACAGTTT TACGTCATGCGGCGATAATTTCTTCGTTTCTGACAAGCACACCCCGTTTA GTGTAGTGTATCAACCACACCTCACTTACGATGTACGACTTTATTGATCC CAACGTAAACGGCCGCCCAAGGTCCCACTTTGTGAGCTGCAACTCTAGAC TCACCGGACATTTGTTTCAAATATTACCACCAGACGAGGTGCAAACTATG AGACAGCAAGCTTCCTTGACATAGGTAGCAGCTACGCGAAATCCGTAGGT CGTACCACGTGGCGTATCTTGTTCAAAGCGCAGACCATGCCATCGTTGAC AAGGATTTTGCTAGGATGATAAGACGCTTCTGTGTCTTTTTTTTATGTCG GTTTCAACCGTCGGTGTTGTTGATGTCGTCTTCAGCTTCAATTTCCTTTG TACCGCTGAGTGATCACTGATCATTGCCGAGATGAATCGCCCGAGCCGGG CGTTTCAATATCTGACACGGTTGGCCTGACGCCGCCGAAGAACAACGTGT ATCGACACCACTATTTTCTCGTTTCCCCTGTTATTGGCAGTGGAGGAGTC TAGTGTGCGTGCCTGGCACAAGACTGCAACTCGAGAGGAATTAGCGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig3907:5482..6629-

>mRNA_H-paniculata_contig3907.10176.1 ID=mRNA_H-paniculata_contig3907.10176.1|Name=mRNA_H-paniculata_contig3907.10176.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig3907:5482..6629- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGTGGGCTTCACTGGGGCAGAAGGCTCGACTGATGTCACCCACATC
GCATGGGGCTGCACCCCGGCATCATATATCCATCTCTACACGGGCAAGGA
AGGATTCCCCCCGACTCTCGCATGCGAGGCAACGATGAGGTGGGCTTCAC
TGGGGCAGAAGGCTCGACTGATGTCACCCACATCGCATGGGGCTGCACCC
CGGCATCATATATCCATCTCTACACGGGCAAGGAAGGATTCCCCCCGACT
CTCGCATGCGAGGCAACGGGTGAGGTCGATGGCTTACAAGCTCTGCGATA
AGGACGGCGTGGAACAGGTGGAGAAGGGCCTCACCTCATGTTCGACAGAG
GATATCACCGGGGTGAGGTCGATGGCTTACAAGCTCTGCGATAAGGACGG
CGTGGAACAGGTGGAGAAGGGCCTCACCTCATGTTCGACAGAGGATATCA
CCGGTGGAGGAGTCTAGTGGAGGAGTCTAG
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