mRNA_H-paniculata_contig3907.10176.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 1.070e-20 Identity = 54/130 (41.54%), Postives = 76/130 (58.46%), Query Frame = 2
Query: 2 FDDIGQLSLISESTAQSAFHTFCKRFADDLFHG*IKILTGDALAVTMKAHDEVGFTGAEGSTDVTHIAWGCTPASYIHLYTGKEGFPPTLACEATGEVDGLQ-ALR*GRRGTGGEGPHLMFDRGYHRWRS 388
FDD+ QLS +S+S AQ FH FC+ FA ++F I + TG L M ++G+TGA GSTDVTHI W P + +TGKEGFP T+A + T + DG A+ G G + + +D G ++ R+
Sbjct: 50 FDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFP-TIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRT 178
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 2.090e-20 Identity = 53/130 (40.77%), Postives = 74/130 (56.92%), Query Frame = 2
Query: 2 FDDIGQLSLISESTAQSAFHTFCKRFADDLFHG*IKILTGDALAVTMKAHDEVGFTGAEGSTDVTHIAWGCTPASYIHLYTGKEGFPPTLACEATGEVDG-LQALR*GRRGTGGEGPHLMFDRGYHRWRS 388
F DI +S IS T S FH FCK FA +L+ + + TG+ L M+ +D +GF GA GSTDVTHI WG P + +YTGKEG PT+A + T + G + A+ G G + + +D+ R R+
Sbjct: 97 FADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEG-KPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRT 225
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 3.390e-20 Identity = 53/130 (40.77%), Postives = 74/130 (56.92%), Query Frame = 2
Query: 2 FDDIGQLSLISESTAQSAFHTFCKRFADDLFHG*IKILTGDALAVTMKAHDEVGFTGAEGSTDVTHIAWGCTPASYIHLYTGKEGFPPTLACEATGEVDG-LQALR*GRRGTGGEGPHLMFDRGYHRWRS 388
F DI +S IS T S FH FCK FA +L+ + + TG+ L M+ +D +GF GA GSTDVTHI WG P + +YTGKEG PT+A + T + G + A+ G G + + +D+ R R+
Sbjct: 188 FADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEG-KPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRT 316
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 3.310e-17 Identity = 44/95 (46.32%), Postives = 58/95 (61.05%), Query Frame = 2
Query: 2 FDDIGQLSLISESTAQSAFHTFCKRFADDLFHG*IKILTGDALAVTMKAHDEVGFTGAEGSTDVTHIAWGCTPASYIHLYTGKEGFPPTLACEAT 286
F DI +S IS TA + FH F + FA +++ I + TGD M +D +GF+GA GSTDVTHI WG P + YTGKEG+P T+A + T
Sbjct: 172 FADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYP-TVAYQVT 265
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 7.090e-17 Identity = 53/130 (40.77%), Postives = 73/130 (56.15%), Query Frame = 2
Query: 2 FDDIGQLSLISESTAQSAFHTFCKRFADDLFHG*IKILTGDALAVTMKAHDEVGFTGAEGSTDVTHIAWGCTPASYIHLYTGKEGFPPTLACEATGEVDGLQ-ALR*GRRGTGGEGPHLMFDRGYHRWRS 388
FDD+ QLS +SES AQ+ FH FC+ A ++F I + TG L M ++G TGA GSTDVTHI P + +TGKEGFP T+A E T + G A+ G G + + +D G ++ R+
Sbjct: 146 FDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFP-TIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRT 274
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 1.030e-16 Identity = 45/97 (46.39%), Postives = 59/97 (60.82%), Query Frame = 2
Query: 2 FDDIGQLSLISESTAQSAFHTFCKRFADDLFHG*IKILTGDA--LAVTMKAHDEVGFTGAEGSTDVTHIAWGCTPASYIHLYTGKEGFPPTLACEAT 286
F I Q+S +S T Q FH FC+ FA +++ I + T ++ L MK +D +GFTGA GS DVTHIAW P + YTGKEGFP T+A + T
Sbjct: 99 FASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFP-TIAYQVT 194
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Match: A0A6H5KEF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF0_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.490e-15 Identity = 49/130 (37.69%), Postives = 70/130 (53.85%), Query Frame = 2
Query: 2 FDDIGQLSLISESTAQSAFHTFCKRFADDLFHG*IKILTGDALAVTMKAHDEVGFTGAEGSTDVTHIAWGCTPASYIHLYTGKEGFPPTLACEATGEVDGLQ-ALR*GRRGTGGEGPHLMFDRGYHRWRS 388
FDD+ QLS +S+S AQ+ FH FC+ FA ++ M ++G+TGA GSTDVTHI W P + +TGKEGFP T+A E T + G A+ G G + + +D G ++ R+
Sbjct: 94 FDDVEQLSKMSKSMAQATFHKFCRHFAAEI----------------MGIFHQLGYTGACGSTDVTHIDWNMCPFTLGRSFTGKEGFP-TIAYEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRT 206
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 1.170e-14 Identity = 44/93 (47.31%), Postives = 53/93 (56.99%), Query Frame = 2
Query: 2 FDDIGQLSLISESTAQSAFHTFCKRFADDLFHG*IKILTGDALAVTMKAHDEVGFTGAEGSTDVTHIAWGCTPASYIHLYTGKEGFPPTLACE 280
FDDI QLS ISE T Q FH F +RFA + F +K G L ++ + +VGF G GS D THI + P S H Y GKEGF T+A E
Sbjct: 146 FDDIPQLSFISEQTIQRVFHEFTQRFALEFFPKHVKFPQGAHLEEILREYKDVGFGGCAGSMDCTHIHYQSAPNSGRHSYVGKEGFA-TVAFE 237
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 3.340e-14 Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = 2
Query: 2 FDDIGQLSLISESTAQSAFHTFCKRFADDLFHG*IKILT--GDALAVTMKAHDEVGFTGAEGSTDVTHIAWGCTPASYIHLYTGKEGFP 262
F I Q+S +S +T Q+ FH FCK FA +++ I + + L MK +D +GF+GA GS DVTHI W P + YTGKEG P
Sbjct: 139 FASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVP 227
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 1.800e-13 Identity = 41/97 (42.27%), Postives = 56/97 (57.73%), Query Frame = 2
Query: 2 FDDIGQLSLISESTAQSAFHTFCKRFADDLFHG*IKILT--GDALAVTMKAHDEVGFTGAEGSTDVTHIAWGCTPASYIHLYTGKEGFPPTLACEAT 286
F I Q+S +S +T Q+ FH FCK FA +++ I + + L MK +D +GF+GA GS DVTHI W P + YTGKEG P T+ + T
Sbjct: 139 FASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVP-TIGYQVT 234 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3907.10176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3907.10176.1 >prot_H-paniculata_contig3907.10176.1 ID=prot_H-paniculata_contig3907.10176.1|Name=mRNA_H-paniculata_contig3907.10176.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp MRWASLGQKARLMSPTSHGAAPRHHISISTRARKDSPRLSHARQRVRSMAback to top mRNA from alignment at H-paniculata_contig3907:5482..6629- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3907.10176.1 ID=mRNA_H-paniculata_contig3907.10176.1|Name=mRNA_H-paniculata_contig3907.10176.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1148bp|location=Sequence derived from alignment at H-paniculata_contig3907:5482..6629- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3907:5482..6629- >mRNA_H-paniculata_contig3907.10176.1 ID=mRNA_H-paniculata_contig3907.10176.1|Name=mRNA_H-paniculata_contig3907.10176.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig3907:5482..6629- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |