mRNA_H-paniculata_contig3904.10173.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3904.10173.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 179 bits (455), Expect = 8.750e-49 Identity = 98/193 (50.78%), Postives = 122/193 (63.21%), Query Frame = 1
Query: 1 CSNGIPGIQSKNICCMAACGQCGGSGCSR-AGGLSAAECCESGVQAVGVLCDDSGEAPCIIDGGICSNGMPGIQHKGICCVAACGQCGDSGCSN-AGGLSAAECCTKDIAAANMDCTDSGVAPCVIYAAGECDGGIPGIQNKDICCVAGCGQCGGSGCSS-AGGLSAAECCVKNIGAAGMVCSATGAAPCIVD 570
CSNGIPGIQ+ N CC+A CG CGG GC+ GGL CC+S ++ G LC + EAPC++D +CSNG+PGIQ CC+A CG CG +GC+ GGL A CC +I C+ + APCV+ C GIPGIQ + CC+A CG CGG+GC+ GGL A CC+ I G +CSAT APCIVD
Sbjct: 2756 CSNGIPGIQTGNACCLAECGTCGGRGCAEYGGGLGEDNCCQSEIEDFGELCSVTMEAPCVVDD-VCSNGIPGIQTGNACCLAECGGCGGTGCAQLGGGLGADNCCMSEIEDFGELCSVTMEAPCVVDDV--CSNGIPGIQTGNACCLAECGGCGGTGCAQLGGGLGADNCCMSEIEDFGELCSATMTAPCIVD 2945
BLAST of mRNA_H-paniculata_contig3904.10173.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI) HSP 1 Score: 151 bits (382), Expect = 1.570e-39 Identity = 92/231 (39.83%), Postives = 115/231 (49.78%), Query Frame = 1
Query: 1 CSNGIPGIQSKNICCMAACGQCGGSGCS-RAGGLSAAECCESGVQAVGVLCDDSGEAPCIIDG----------------GICSNGMPGIQHKGICCVAACGQCGDSGCSNAGGLSAAECCTKDIAAANMDCTDSGVAPCVIY-------------------------AAGECDGGIPGIQNKDICCVAGCGQCGGSGCSSAGGLSAAECCVKNIGAAGMVCSATGAAPCIV 567
C GI GIQ+ ++CC +C CGGSGCS R GG ECC GV+A G C +GEAPCI+ G C G+ G+Q +CC +CG CG GCS+ G CC +I AN+DC+ +G APC++ AAG C+GGI G+Q ++CC CG CGG GCS G CC I A + CS TG APCIV
Sbjct: 332 CDGGIVGIQASDVCCSLSCESCGGSGCSGRDGGED--ECCGGGVRASGRDCSVTGEAPCIVTSPEPSTPAPTPAPTRAAGTCDGGIVGVQASDVCCALSCGSCGGDGCSDRDG-GEDNCCGVEIRTANLDCSVTGEAPCIVTSPEPSTXXXXXXXXXXXXXTPAPSRAAGTCEGGIVGVQASNVCCALSCGSCGGDGCSDRDG-GEDNCCGVEIRTANLDCSVTGEAPCIV 558
BLAST of mRNA_H-paniculata_contig3904.10173.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 147 bits (371), Expect = 1.410e-37 Identity = 95/206 (46.12%), Postives = 114/206 (55.34%), Query Frame = 1
Query: 19 GIQSKNICCMAACGQCGGSGCS-RAGGLSAAECCESGVQAVGVLCDDSGEAPCIIDGG-----ICSNGMPGIQHKGICCVAACGQCGDSGCSNAGGLSAAECCTKDIAAANMDCTDSGVAPCVI---------------YAAGECDGGIPGIQNKDICCVAGCGQCGGSGCSS-AGGLSAAECCVKNIGAAGMVCSATGAAPCIVD 570
GI CC A C +CGGSGCS R GL+ A+CC S + A G C G APC+++ G S G GI +CC A CG CG SGC + GL+A ECCT IAAAN+ C G APCV+ + CDG + G D CC AGC +CGGSGCS GGL+ A+CC +I +CS TGAAPCIVD
Sbjct: 23 GILKGIYCCSAGCEECGGSGCSDRGDGLTGADCCTSDILAAGKAC---GSAPCLLEEGSSPTPASSGGCDGILQGDVCCSAECGTCGGSGCGSRAGLTANECCTSTIAAANVPC---GSAPCVVDGDTSPTXXXXXXXXSGSFTCDGVLKG----DYCCSAGCVECGGSGCSDRGGGLTGADCCTSDIS---NLCSVTGAAPCIVD 215
BLAST of mRNA_H-paniculata_contig3904.10173.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI) HSP 1 Score: 142 bits (358), Expect = 5.590e-37 Identity = 83/209 (39.71%), Postives = 114/209 (54.55%), Query Frame = 1
Query: 1 CSNGIPGIQSKN--ICCMAACGQCGGSGCSRAG--GLSAAECCESGVQAVGVLCDDSGEAPCIID------GGICSNGMPGIQHKG--ICCVAACGQ-CGDSGCSNAGGLSAAECCTKDIAAANMDCTDSGVAPC----VIYAAGECDGGIPGIQNKD--ICCVAGCGQCGGSGCSSAGGLSAAECCVKNIGAAGMVCSATGAAPCIVD 570
C+ GI G++S + +CC CG CGG GC+ A L+A +CC + + GV+C D+G APCI+ +C NG G+Q +CC CG+ CG GC G+ A++CC I + + C D APC V A C G PGI+N+D +CC C CGGS C + GL+ A+CC I A +CS G+APC+VD
Sbjct: 25 CAGGISGVESTSLDVCCTLECGTCGGVGCTPANTSSLTANDCCATEISESGVMCSDTGVAPCILSTEAASADSVCDNGQTGVQDPDTDVCCPLECGESCGGEGCGTIPGVDASQCCASIIEQSGIVCGDGIEAPCTQVAVAVADSVCSNGFPGIENEDATVCCDPACVVCGGSTCGNVAGLTGADCCTGTIIANDELCSEKGSAPCVVD 233
BLAST of mRNA_H-paniculata_contig3904.10173.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE) HSP 1 Score: 122 bits (305), Expect = 1.190e-28 Identity = 64/126 (50.79%), Postives = 79/126 (62.70%), Query Frame = 1
Query: 1 CSNGIPGIQSKNICCMAACGQCGGSGCSR-AGGLSAAECCESGVQAVGVLCDDSGEAPCIIDGGICSNGMPGIQHKGICCVAACGQCGDSGCSN-AGGLSAAECCTKDIAAANMDCTDSGVAPCVI 372
CSNGIPGIQS N CC+A CG CGGSGC++ GGL CC+S ++ G LC APC++D +CSNG+PGIQ CC+A CG CG SGC+ GGL CC +I C+ APCV+
Sbjct: 1576 CSNGIPGIQSGNACCLAECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDD-MCSNGIPGIQSGNACCLAECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVV 1700
BLAST of mRNA_H-paniculata_contig3904.10173.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE) HSP 1 Score: 118 bits (296), Expect = 1.640e-27 Identity = 68/149 (45.64%), Postives = 84/149 (56.38%), Query Frame = 1
Query: 7 NGIPGIQSKNI-CCMAACGQCGGSGCSRAG---GLSAAECCESGVQAVGVLCDDSGEAPCII---------DGGI----------CSNGMPGIQHKG-ICCVAACGQCGDSGCSNAGG---LSAAECCTKDIAAANMDCTDSGVAPCVI 372
+G GI + CC CGQCGG GCS AG GL + CC GV+++GV CDD+ EAPCII D GI CSNG+ GI HKG +CC ACGQCG +GC +AG L CC+ + A N+ C D+ APC+I
Sbjct: 575 DGTEGIDGNGVVCCPIGCGQCGGDGCSTAGSANGLGSESCCGGGVKSLGVYCDDTNEAPCIIGSAPDTDDVDSGISEESADDTQTCSNGIEGIDHKGEVCCPLACGQCGGTGCGSAGSAFELDGESCCSSQVLAGNVYCEDTNAAPCII 723
BLAST of mRNA_H-paniculata_contig3904.10173.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE) HSP 1 Score: 110 bits (274), Expect = 1.050e-24 Identity = 65/136 (47.79%), Postives = 79/136 (58.09%), Query Frame = 1
Query: 205 MPGIQHKGICCVAACGQCGDSGCSNAGGLSAAECCTKDIAAANMDCTDSGVAPCVIYAAGE----------------CDGGIPGIQNKDICCVAGCGQCGGSGCSSAGGLSAAECCVKNIGAAGMVCSATGAAPCI 564
+ GIQ+K +CC +CG CGD GCS A G AA CCT ++ A ++C G APCVI A+ CDGGI GIQ K++CC A CG CGG GCS G S A CC + A+G +CS TG APCI
Sbjct: 66 ISGIQNKDVCCPVSCGMCGDEGCSTAPG-GAASCCTTNVLDAGIEC---GEAPCVIDASSSTTPAPATPAPTSEVPMCDGGIVGIQAKEVCCSASCGSCGGVGCSGRDGGSDA-CCGGGVTASGRLCSVTGEAPCI 196
BLAST of mRNA_H-paniculata_contig3904.10173.1 vs. uniprot
Match: A0A6H5JGP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP9_9PHAE) HSP 1 Score: 102 bits (255), Expect = 5.220e-24 Identity = 60/134 (44.78%), Postives = 77/134 (57.46%), Query Frame = 1
Query: 193 CSNGMPGIQHKGI-CCVAACGQCGDSGCSNAG---GLSAAECCTKDIAAANMDCTDSGVAPCVIYAA--GECDGGIPGIQ-NKDICCVAGCGQCGGSGCSSAG---GLSAAECCVKNIGAAGMVCSATGAAPCI 564
C++G+ GI G+ CC CGQC +GC+N G GL + CC + A C +G APC+ + GEC GGI GI N +CC CGQCGG+GCSSAG GL + CC + ++G C TG APCI
Sbjct: 48 CNDGIEGIDGNGVVCCPLECGQCAGTGCTNFGADFGLGSESCCGGGVKDAGNYCDVTGEAPCIYGSPPEGECSGGIEGIDGNGVVCCPLECGQCGGTGCSSAGAASGLGSESCCESGVDSSGRYCDVTGEAPCI 181
BLAST of mRNA_H-paniculata_contig3904.10173.1 vs. uniprot
Match: A0A6H5L8H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H5_9PHAE) HSP 1 Score: 107 bits (268), Expect = 9.670e-24 Identity = 66/149 (44.30%), Postives = 85/149 (57.05%), Query Frame = 1
Query: 187 GICSNGMPGIQHKGI-CCVAACGQCGDSGCSNAG---GLSAAECCTKDIAAANMDCTDSGVAPCVIYAA---------------GECDGGIPGIQ-NKDICCVAGCGQCGGSGCSSAG---GLSAAECCVKNIGAAGMVCSATGAAPCI 564
G CS+G+ GI G+ CC CGQC SGCS AG GL+++ CC I ++ C D+GVAPC+ +A G C+ GI GI N +CC GCGQC GSGCS+AG GL+++ CC I ++G C TG APCI
Sbjct: 533 GTCSDGIEGIDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAPDADXXXXXXXXXXVGTCNDGIEGIDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCI 681
BLAST of mRNA_H-paniculata_contig3904.10173.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 107 bits (266), Expect = 1.810e-23 Identity = 58/130 (44.62%), Postives = 74/130 (56.92%), Query Frame = 1
Query: 184 GGICSNGMPGIQHKGICCVAACGQCGDSGCSNAGGLSAAECCTKDIAAANMDCTDSGVAPCVIYAAGECDGGIP-GIQNKDICCVAGCGQCGGSGCSSAGGLSAAECCVKNIGAAGMVCSATGAAPCIVD 570
G CSNG+ G++ G+CC CG CG +GC + GL+ +CCT I N C+ + APCVI E D G+ DICC AGCG CGG+GC+ GGLS ECC I AA C +APC++
Sbjct: 21 GTTCSNGLSGLEKGGVCCPVECGTCGGTGCGSRPGLTKYDCCTSTIKEDNHLCSVTKEAPCVIDEETEADPTCSNGVAKGDICCSAGCGYCGGTGCAGRGGLSGDECCTSKIAAANKSCD-DQSAPCVMS 149 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3904.10173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3904.10173.1 >prot_H-paniculata_contig3904.10173.1 ID=prot_H-paniculata_contig3904.10173.1|Name=mRNA_H-paniculata_contig3904.10173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp CSNGIPGIQSKNICCMAACGQCGGSGCSRAGGLSAAECCESGVQAVGVLCback to top mRNA from alignment at H-paniculata_contig3904:660..3063- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3904.10173.1 ID=mRNA_H-paniculata_contig3904.10173.1|Name=mRNA_H-paniculata_contig3904.10173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2404bp|location=Sequence derived from alignment at H-paniculata_contig3904:660..3063- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3904:660..3063- >mRNA_H-paniculata_contig3904.10173.1 ID=mRNA_H-paniculata_contig3904.10173.1|Name=mRNA_H-paniculata_contig3904.10173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at H-paniculata_contig3904:660..3063- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |