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Homology
BLAST of mRNA_H-paniculata_contig39.10161.1 vs. uniprot
Match: D7FIM5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIM5_ECTSI) HSP 1 Score: 57.4 bits (137), Expect = 5.050e-5 Identity = 114/412 (27.67%), Postives = 167/412 (40.53%), Query Frame = 1
Query: 58 QLRRTLDRMEHEGKQQLHLLRERVDAERALLKETMSFSRAAAVASVQQEEDLRKAREAVAAMLHEQHKQ-----------------------QSSLVSP--ELARGDTE-----------ELQLGTRLSDENQKLAAEVAALRLRMEAMAAKAES--------------------------QQPVGGGRANSLADGQRPAP-IAGLIGVSQVESSEFSDEPEGANSRGGRSSPFSPNSRSEQERLKALFLNPEESIRAIAATSTGGRLG-------NAVQVHRNSTGSQASAVEVGIEALLASPSSXXXXXXREGNTRESGVYISSNSSNASDVLGT-------ETARLIEEETEEILAKLKANPPPEIRALLRVRQEAELFAAAARARCAEIERLPPPASLGSSRPRPPTA 1062
QL + L R+E E +++ LR R+DAER+ +K TM+FSRA+A+ SV+Q+ +L KAREA A L Q + LV L R + E L ++E ++LA E++ALR + + + AE+ + V GG S A+GQRPA ++G++ S+V S G+N G ++ P S A ++ GRLG + R S+ + SA+ I ++ S S+ E ++R G E R IEEE E + +L+ANPPP IRALL R E + A AR+ +E L PP PRPP A
Sbjct: 22 QLLQVLGRLEDEAEREQEALRLRIDAERSEVKATMTFSRASAIKSVEQQMELSKAREAEGAWLRAQQXXXXXXXXXXXXXXXXXXXXXXXXTREDLVGDGGRLLREENRRXXXXXXXXXXEAFLLRSEAEEAKRLAGELSALRAKEDVGSTAAEACSLRGDMSVAGASGGGGCTSEPCVGAARAVAGGVPASPAEGQRPATEVSGVMLPSEVRDS-------GSNGVVGAAA-------------VGAVQEPPASANCGLAAASAGRLGLMSIEPGPSPAWPRRSSATGGSALSDNIVSVSNSSSNNSRG---ERDSRSEGXXXXXXXXXXXXXXXXXXSRRKGELQRAIEEEAERVYLELRANPPPAIRALLEARGEMDKLVAEARS---TLEGLKPP-------PRPPAA 400
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-27_000310.1 |
| Exons | 3 |
| Model size | 1838 |
| Cds size | 1095 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig39.10161.1 >prot_H-paniculata_contig39.10161.1 ID=prot_H-paniculata_contig39.10161.1|Name=mRNA_H-paniculata_contig39.10161.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=365bp
MVSVQLRRTLDRMEHEGKQQLHLLRERVDAERALLKETMSFSRAAAVASV QQEEDLRKAREAVAAMLHEQHKQQSSLVSPELARGDTEELQLGTRLSDEN QKLAAEVAALRLRMEAMAAKAESQQPVGGGRANSLADGQRPAPIAGLIGV SQVESSEFSDEPEGANSRGGRSSPFSPNSRSEQERLKALFLNPEESIRAI AATSTGGRLGNAVQVHRNSTGSQASAVEVGIEALLASPSSSGGGGGREGN TRESGVYISSNSSNASDVLGTETARLIEEETEEILAKLKANPPPEIRALL RVRQEAELFAAAARARCAEIERLPPPASLGSSRPRPPTAASDDEHSPVNG MRQPRLPFADSFEC* back to topmRNA from alignment at H-paniculata_contig39:8197..14350+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig39.10161.1 ID=mRNA_H-paniculata_contig39.10161.1|Name=mRNA_H-paniculata_contig39.10161.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6154bp|location=Sequence derived from alignment at H-paniculata_contig39:8197..14350+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CCTGGCTGGTGTTCTGGGCCTGCACGAAAGAGACGTTGAGTTAACATGGT
GAGTGCGAAACAGTGAATGGATTTAAGGGCCCATGCTTTAAAGAGGAAAC
AAGAAAATCGTCAACTCTCGTCTCCAGAATTTTGCGACTACAACAAAAGG
TCATTGACGGGTTCGGTTAATATCCATCACTTTTCCCAGGGCTCAATAGT
TTCATCCGTTGGTGGCCTTTTCTTGCTACCATATATCATACATCATGGAC
ATGGCGGCAGCGTTTGTGATATCATATAGTACTGTGCCAAAGGAATACAG
TTACGGTATGGGTAACAACTTGTTGTGCTCGGTATTTTTATTATGCCAAG
CTCTCCTTTTCCGTCTCCCTGTCTCTGTCCACGTGATTTGTAGTAGCACT
TCTGCACTACTACCTGTACTCATTTACAAATGCTCTATTCGAGTTGTTGT
CATTTTCAGTTTTCAGGGCTGGAAGCTTCACACTTCTCGGAGAATACACA
GTTAGTGGAGCATTAACGCACCATTCAGTAGTGCATTAACGTACAATGCC
GTCGTGGAGACTTTAACTGGCATACGTGTATTTTGCCGCAGCCTCAACTC
TTTTTGTTGCGATATCAGTAAAGACAGTGTTCGCTGCTGTGGTCTCTTCA
AATTGTTGAAATTCATTTCGGCTAACCTTGTTGCAGTACCATGTGTGCAT
GTGTGCATGCACACTATCCTGTAGACAACACCAAGGGAATAATGCTCGAG
GTCCAGCAATTCCTACTGCTATTGGTTATTTGCCAAACGTGTTGGTACAG
AAGTGAAGTATGTTACATTTGTGCCCGATTCACGCTCGATTGTTGTCAAA
AATGGTGTACGTATTTCTGACACCACGACGAGAACCGTGATACCTGTCCG
GGGTCCCAAGTCGCCACCGTTCCAAAGTAATGGCTGAAAGAAAATTGGAG
TATAATATCCACATTCTTGTAGGGAATTAGGACGTACGTAACAGTTCTAC
AAAACGGACATTTCTCACTTGGCTTATGGTTTTTGGACATGAAATTTTGA
GTGTTGATGATGCGCATCAAAATTTCGGAGGTCGTCGAAGATTATAGTTT
TTGATTTCTTCTTTTTGTTCCGAAGTAAACGACGGTTCTATAGACCATAA
AATCATTCAAGCGCCATTATTTTCGGAACAAAAACCCAAAAGGTATCATA
TTGGATGACCTCCAAATTTTGATGCATATCTACCCTCAAAATTTCAGGAC
TAACTCCTAAAAAGCAAGTGAGAAAATGCCCGTGAATGTTTCATCCCCCG
GACAGATTAAAAAGTATTCGCCTGGGTTTCAGAATGAGGTTGTGTATTTC
ATATGCCCCGGACCATCTACGACTGCTAATAATAATCGTAAATCGAATAT
ACAGATATGAATACTTCATTCCATGTGTCCGCTCATGCTGAAAGTCAGGC
GAATACTTTCAGTATTGGTGACAACCATTTGCAAGTATTCGTATTTGTCC
GGAATGGAATGTATTTGGTATCTCTGTCTGGGCCCAGCCTATAGAGAAGT
TGGAGCCCGAATTTCAAAGAGCGTTTCATCCAGCTACATGCTACCAATGG
CCATGTCCATGGACGCAATCGAAGCGCATTCTCTCACACCATAGAGCCCT
GCCCTAATTGCCTGTGACGAGAGTACTTCACAGTTAGAGGTGCGCCTGAG
CCCGATATAAGGCCGATTATTGGTGACAGTGACTACGCAGTAAAGCGCCG
AATAAAGAAAAAAAAATGGACATCTCCTGACAGATAACGTCACCTGTATC
CCGCAAAGTACTTGTATTCAGTGTTGGATTTCCACGCACTAGTAACCTCA
ATTACTCGATACAGGTTAGGGACTGGCTCGTGAGACTCAACTAATCTAGG
GCTTGATCTTGCTGGAATTTTAATCCCTGTTATGAGAATCCCAAACGCCC
CAATAAGTAGTGGTTTTTTTGCTACCTTCTCTGTGAAGATGTTTTTTCCT
CATGACTTCAAAAATACATCAAGATGAACCCCCTAACAGTGTTTTTCGCG
CACACGATGCAAAAAACTGCACCCCAATCGACGACCTTGCTGAGGAGTAT
TTTGATCTGAAGTTAGATTATCAACACAAACAAGCACCCCAAACTACTCG
AATTTAAACTGGTCCATCAACACCAAAAAGGCATCCAAAACTACTCGAAT
TTAGAGTCCGGGAGAGGGCATCCCTTCAAACGTAAATATTCTTCAAACAT
ATGGCCGTTAGCGAACGATTGGGTGGTCGTAGGGACATAATTCGCTTTGT
ATATTCAAAGGTTGTAGCTCGTTGCTGTAACCAGCATTCTCAGGGTCCCA
AAGCACTCGAATCTTAGCTTTGCTCGGCCTTTCCCCGTCTAGCTGTGAGC
TCCAGCAGTACACGATAAAAGAGGACAACGTGGTTAACACACCAGCAGCA
GCTCTGCTTCTTCGCGCATCCTACGCAAAACCACCCTCCATCCACGACGT
TGCTGAGAAGCACTTCGGTTTATTGCTTAATATGACCACGAAAGACAAGG
GCAAGCAACGATCAAAACTGGCGCGAAAAAGAACGCTTCTAAAGGTTGGA
GATGAATACCTTGCGCGTACTGGCATGGCCGTGTCGGAAACCGCTGGGCG
CCGGTGCACCGATACTACCCAGAAGCGCGGAAGAAACTTGAGGATGCCCG
TGCCCATAGCCGTGAGTTCATTTATTTTTCATCTCTCGTGGCATAATGCC
AAAATAGCTTTTTCACGTCTTGATTGTCAAAAAAACAAAAAAAAATGTTG
CAAGCCACGAAACTGACCCAGTCAGAGATGACCTCGCCCATCTATTCACG
CCGCGAGATATTAATTTGCCAACACACTCATCGCTCGGACCCGCGGTCAC
AGGCTTGCTGTTTTCCACAAATAGTGCAATATGTAGCCCGCGTAGGTCGC
ATATTTGAATAAAAAATGTACTTTGTATGTGTCATGGATTCTATAACGAC
CATGCATATCTGGAAGAATGGGAATAGGGTCACTTTGTCCCCCCCCCCCT
TTCTTTTTGAGCTAAAAAACAGTATTGGGCCATGGTTTCAAAACTGAGAG
ATATGGGCCCCCCTTCAACGGGGTAAGAAACTTTTTATTTCGGATAAGAC
TCAAACCACGAGCCTCACTCACTCCAAACAAGAGATTTTATTATTAATAT
AATACAAGGGGAGGTCGCCACTGCACTGCTTTTAAATAACTGCACGCGTC
TCGAATTTCCAAGGTATCTGTTCAACTGCGGCGAACTCTAGATCGTATGG
AACACGAAGGTAAGCAGCAGCTACATTTGCTGCGCGAGAGGGTGGACGCC
GAGCGAGCTTTGCTGAAAGAGACCATGAGCTTCAGCCGTGCGGCAGCTGT
GGCTTCTGTCCAGCAAGAGGTACATTAAAAATAACACACTGTAATTTATT
CACAAAGATAACGACAACTTCGCACTGGCTGTTGCTTTTGTTTTTGGCTT
TTCTTGTCTCATGTGTTTCACTCGCAGTGTAGTGTGAAGTGTACCGTGTT
GCTGGGAGTTATGCCAAATTATTTCATTTTCATGCGTACATCGTAACGTT
CAAAGCATTTTCTGTATGCGTCGTCCCCTCCGTATGTACCGCCATTTTTG
CTGAATTTAGATTCTCGCCAATGAAAAAACGTTGATTTTGCCCTGTGATG
ACTTCAAAAATTATTGTGTGCACATGTTTATGAAGGAGGTGGAATGTGGA
CAACATCAGAGCTGTGCAAAAATGGCGGTACACAAGGGGTGGCGGTAGTG
GATTATCAGTGAATATGACCCCGGAGCACGTTGTGATATGACAAACCCTC
AATGGTGAACAGGTTAAATAGAAAATGCGATGTGTGCTCGCCATGTTGGT
ACTGCATTTCGGATACTCCTTTTTCACCAGGGGGACAATATACTGAGTGT
TAGCGATGGGCTTCTCTTGTTTTGGTATTTCTCCGAAAGACCCATTCACG
CAAGTCATCTGAAATATCTCCTGCAGAAAATCATTTCAACACTGGTGATA
CTCAGCACACGCGACCCTTTCCCTTCTCTTGAGACTGCCTGTTGATAAGG
GCGGTTGATTTCCATGTTTCTTAGCAGGAAGAGGTAGGCTTGAAATTAGT
CGGGGAGGGGAGGAGGATATTTTTGGTGCCAGCAACAAATCGTGAGAGTA
TCAGTTGATTTGGACGGCTGTTTGTCATGCCACTTGGCAGGAAGAGATGC
TTGAAATTGGTCTGCAGAATGGGGTGAAACGTGGTCGGTATAAGAATACT
TAAATCTGTCGAGACTAGTAGTGATTTTATAGTCATAATCCAATTGTAAT
TCTGTTGGTTATGCCGGTGCTGCTTGCTTGTTGTACGCCATAAAAATGTG
TATAGTGGGGTCTACGCTCTGACAGTCGGGATTTGACTAAGTCATAATCT
ATGTGATGAACGAAATGAGAAATATTTTTACACCCCCTATGGGAAACCGT
GTGTCCTCTATGGCCCTCAGGAGGACCTCCGCAAAGCACGAGAAGCCGTG
GCGGCAATGCTTCACGAACAGCACAAGCAGCAATCTTCGCTCGTGTCACC
GGAGCTAGCAAGGGGGGACACCGAAGAACTACAACTAGGGACGCGATTAT
CAGATGAAAACCAAAAGCTCGCCGCGGAAGTCGCCGCCTTACGTTTGCGA
ATGGAGGCAATGGCTGCAAAGGCCGAGTCGCAGCAACCCGTCGGCGGCGG
GAGGGCTAATAGCCTTGCCGATGGGCAACGGCCCGCTCCTATTGCTGGAC
TTATCGGAGTGAGCCAGGTCGAGAGTAGCGAATTTAGTGACGAGCCGGAG
GGTGCGAATAGTAGGGGTGGCCGTAGCTCGCCGTTTTCGCCTAACTCGAG
ATCGGAACAAGAGCGGTTAAAGGCATTGTTTCTCAACCCGGAAGAGTCGA
TCCGCGCGATCGCTGCTACTAGCACTGGTGGCCGTCTGGGCAATGCAGTC
CAGGTGCACCGCAACAGCACGGGGAGTCAGGCGTCCGCGGTCGAAGTTGG
CATCGAGGCACTACTAGCGTCGCCATCGAGCAGTGGCGGGGGCGGAGGAA
GGGAGGGGAATACGCGCGAGTCGGGCGTGTACATCAGCAGCAACAGCAGC
AATGCCAGTGATGTCCTGGGTACCGAGACCGCACGGCTTATCGAAGAAGA
AACCGAGGAGATCCTGGCAAAGCTCAAAGCCAACCCCCCGCCGGAAATTC
GCGCGCTGTTGAGAGTGCGACAGGAGGCAGAGCTCTTCGCCGCGGCCGCC
CGAGCGAGGTGCGCGGAGATTGAACGCTTGCCGCCCCCGGCATCGTTGGG
CTCATCGCGGCCGCGACCGCCGACGGCGGCATCTGATGACGAACACAGCC
CAGTCAACGGGATGCGTCAGCCCCGTCTACCTTTTGCGGACAGTTTCGAA
TGCTGATTCAACCAGAGTCGGAGAAAACATGGCAACGTTGAGGGGTTTGA
GGAGAATAGCAATCGAATCAAAGTTCGGGTGCATTCAAATATGTTCTATA
AGATGTGGAAGCGTGTACGAGTATTGATGTAACACTGAATGGAGGCCGAT
GTTTTTAACGGTATAGGTATCCACGTTTGATGGTCGCAGGGTGTATCCAA
TCGATGGCTTTCAAGCCCCTCCCCCCTCCCACCCCCCTGACTGTTGTGGG
TCATCGTCAGGAACGTAGCAGATGTTGGAGCTAGTATTTATTGGCGTAGA
GGACCGGCGACGGTGGCGTTTGATGACCATCCTAGTTGTCACAAATGGGT
AGCTCCGATTCGAATCCTCGGCTGGAAAGGGTGTTTATGGTGTGCGCCGA
GTCCGCATTATTTTCGTGTTGTTTCTCGTGAATATCGATATTTAGGTACA
AGTTGTGAATATTCTTACGGTAGTTGTTTGTCTCATTTAGAGTGTATCCT
AAGGTACGGGCTATCTCTGGAAAAGGCCTCATGTATTCAGTCTTTGGTTT
CGATTCATGGTGGTGATGGCCATGTTGGATTACTTTTTTAAGTATTGCGA
AATGCCCCCAATTTCTGTGCATGTCCTATTTATTGACCAGCAACTCCTCT
GAGCATAATATACTGTTATATTTGCATTTATTTATTTTAAGCACAGTCGA
GGCA back to topCoding sequence (CDS) from alignment at H-paniculata_contig39:8197..14350+ >mRNA_H-paniculata_contig39.10161.1 ID=mRNA_H-paniculata_contig39.10161.1|Name=mRNA_H-paniculata_contig39.10161.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2190bp|location=Sequence derived from alignment at H-paniculata_contig39:8197..14350+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGATGGTATCTGTTCAACTGCGGCGAACTCTAGATCGTATGGAACACGA AGGTAAGCAGCAGCTACATTTGCTGCGCGAGAGGGTGGACGCCGAGCGAG CTTTGCTGAAAGAGACCATGAGCTTCAGCCGTGCGGCAGCTGTGGCTTCT GTCCAGCAAGAGGTATCTGTTCAACTGCGGCGAACTCTAGATCGTATGGA ACACGAAGGTAAGCAGCAGCTACATTTGCTGCGCGAGAGGGTGGACGCCG AGCGAGCTTTGCTGAAAGAGACCATGAGCTTCAGCCGTGCGGCAGCTGTG GCTTCTGTCCAGCAAGAGGAGGACCTCCGCAAAGCACGAGAAGCCGTGGC GGCAATGCTTCACGAACAGCACAAGCAGCAATCTTCGCTCGTGTCACCGG AGCTAGCAAGGGGGGACACCGAAGAACTACAACTAGGGACGCGATTATCA GATGAAAACCAAAAGCTCGCCGCGGAAGTCGCCGCCTTACGTTTGCGAAT GGAGGCAATGGCTGCAAAGGCCGAGTCGCAGCAACCCGTCGGCGGCGGGA GGGCTAATAGCCTTGCCGATGGGCAACGGCCCGCTCCTATTGCTGGACTT ATCGGAGTGAGCCAGGTCGAGAGTAGCGAATTTAGTGACGAGCCGGAGGG TGCGAATAGTAGGGGTGGCCGTAGCTCGCCGTTTTCGCCTAACTCGAGAT CGGAACAAGAGCGGTTAAAGGCATTGTTTCTCAACCCGGAAGAGTCGATC CGCGCGATCGCTGCTACTAGCACTGGTGGCCGTCTGGGCAATGCAGTCCA GGTGCACCGCAACAGCACGGGGAGTCAGGCGTCCGCGGTCGAAGTTGGCA TCGAGGCACTACTAGCGTCGCCATCGAGCAGTGGCGGGGGCGGAGGAAGG GAGGGGAATACGCGCGAGTCGGGCGTGTACATCAGCAGCAACAGCAGCAA TGCCAGTGATGTCCTGGGTACCGAGACCGCACGGCTTATCGAAGAAGAAA CCGAGGAGATCCTGGCAAAGCTCAAAGCCAACCCCCCGCCGGAAATTCGC GCGCTGTTGAGAGTGCGACAGGAGGCAGAGCTCTTCGCCGCGGCCGCCCG AGCGAGGTGCGCGGAGATTGAACGCTTGCCGCCCCCGGCATCGTTGGGCT CATCGCGGCCGCGACCGCCGACGGCGGCATCTGATGACGAACACAGCCCA GTCAACGGGATGCGTCAGCCCCGTCTACCTTTTGCGGACAGTTTCGAATG CTGAGAGGACCTCCGCAAAGCACGAGAAGCCGTGGCGGCAATGCTTCACG AACAGCACAAGCAGCAATCTTCGCTCGTGTCACCGGAGCTAGCAAGGGGG GACACCGAAGAACTACAACTAGGGACGCGATTATCAGATGAAAACCAAAA GCTCGCCGCGGAAGTCGCCGCCTTACGTTTGCGAATGGAGGCAATGGCTG CAAAGGCCGAGTCGCAGCAACCCGTCGGCGGCGGGAGGGCTAATAGCCTT GCCGATGGGCAACGGCCCGCTCCTATTGCTGGACTTATCGGAGTGAGCCA GGTCGAGAGTAGCGAATTTAGTGACGAGCCGGAGGGTGCGAATAGTAGGG GTGGCCGTAGCTCGCCGTTTTCGCCTAACTCGAGATCGGAACAAGAGCGG TTAAAGGCATTGTTTCTCAACCCGGAAGAGTCGATCCGCGCGATCGCTGC TACTAGCACTGGTGGCCGTCTGGGCAATGCAGTCCAGGTGCACCGCAACA GCACGGGGAGTCAGGCGTCCGCGGTCGAAGTTGGCATCGAGGCACTACTA GCGTCGCCATCGAGCAGTGGCGGGGGCGGAGGAAGGGAGGGGAATACGCG CGAGTCGGGCGTGTACATCAGCAGCAACAGCAGCAATGCCAGTGATGTCC TGGGTACCGAGACCGCACGGCTTATCGAAGAAGAAACCGAGGAGATCCTG GCAAAGCTCAAAGCCAACCCCCCGCCGGAAATTCGCGCGCTGTTGAGAGT GCGACAGGAGGCAGAGCTCTTCGCCGCGGCCGCCCGAGCGAGGTGCGCGG AGATTGAACGCTTGCCGCCCCCGGCATCGTTGGGCTCATCGCGGCCGCGA CCGCCGACGGCGGCATCTGATGACGAACACAGCCCAGTCAACGGGATGCG TCAGCCCCGTCTACCTTTTGCGGACAGTTTCGAATGCTGA back to top
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